Rh1CG439500

Serine threonine-protein phosphatase 4 regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002676
Physical Location & Seq
Forward (+)
69330255 .. 69332959
2705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG439500.1

Sequence Viewer

Length: 729 bp
ATGGAGATACCATCAAATGAAATTCCAGAGCCCTCGGCGAATTCAACCGGTGATGCTGAGCAGCAGCAACATAATGTTGTTGTGATGGTTCCTCAGGCATTAAATCACGGATCCAAGGACTCCAAGCACAAGATTGCTGATGGTGAAGTTAGAGGCATACTAGAAGTTATTGCATCCACTGGGAGATTTTGGCATGATTGGGACAAATTAAAGAGCATGCTATCCTTTCAGCTGAAGCAGGTTCTGTCAGAGTATCCTGATGCAGAAAAGACTAGTGAGCAGCAAATTACTACTTTAGGAGAAACCTACCTAGAACTGGTGAAGAGGTTGGATGAAGCTCTTCATGGTTTTACCGAAGGTCCTCCATTTACCCTTCAGAGGCTTTGTGAGATCCTATTGGATGCACGCAGCATCTACCCGAACCTCTCAAAGCTTGCTCTAGCTCTAGAAAAGAACCTATTGGTGACATCTATGCTGACAATCTCAACGGATCCGTATCCGCAATCAGTGTTGCAAAAGACAGATGAACCAGAAAAAGCAAGTGAAGAACCTAAACTTCACTCTGACTCTGTGCAAAATGGGGTGGAACCTATGGTAGGTGACAGGGATGAAGTAATGGTAGAGGTTGAGCAGGCCGATATCGACGATGACATGGCCATTGCCATGGAAGCTTTTGAAGATATAGTTGGGTCATCAGAAACAAATTCAGTGCAGACCAATAACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPP4R2

Protein Analysis

242

Amino Acids

26.87

Weight (kDa)

4.41

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPP4R2 PF09184 39 - 162 1.1e-13 PPP4R2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 229
AciI CCGC 1 cut(s) 500
AclWI GGATC 5 cut(s) 105, 118, 385, 485, 498
AcoI YGGCCR 1 cut(s) 654
AcsI RAATTY 3 cut(s) 21, 40, 703
AcuI CTGAAG 2 cut(s) 254, 359
AfiI CCNNNNNNNGG 3 cut(s) 316, 378, 596
AgeI ACCGGT 1 cut(s) 47
AgsI TTSAA 2 cut(s) 45, 677
AhlI ACTAGT 1 cut(s) 272
AjuI GAANNNNNNNTTGG 2 cut(s) 669, 701
AluBI AGCT 5 cut(s) 232, 338, 433, 443, 671
AluI AGCT 5 cut(s) 232, 338, 433, 443, 671
AlwI GGATC 5 cut(s) 105, 118, 385, 485, 498
AlwNI CAGNNNCTG 1 cut(s) 244
AoxI GGCC 2 cut(s) 633, 654
ApeKI GCWGC 4 cut(s) 61, 64, 280, 408
ApoI RAATTY 3 cut(s) 21, 40, 703
AsiGI ACCGGT 1 cut(s) 47
Asp700I GAANNNNTTC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 359
AsuHPI GGTGA 5 cut(s) 62, 155, 331, 475, 611
AvaII GGWCC 1 cut(s) 359
AxyI CCTNAGG 1 cut(s) 93
BalI TGGCCA 1 cut(s) 656
BamHI GGATCC 2 cut(s) 110, 490
BanII GRGCYC 1 cut(s) 33
BbvI GCAGC 4 cut(s) 73, 76, 292, 420
BccI CCATC 3 cut(s) 19, 79, 134
BciVI GTATCC 2 cut(s) 264, 507
BcuI ACTAGT 1 cut(s) 272
BfaI CTAG 5 cut(s) 161, 273, 311, 440, 446
BfuAI ACCTGC 1 cut(s) 229
BfuI GTATCC 2 cut(s) 264, 507
BisI GCNGC 4 cut(s) 62, 65, 281, 409
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 4 cut(s) 63, 66, 282, 410
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 4 cut(s) 90, 112, 492, 588
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 5 cut(s) 43, 182, 250, 391, 420
BmuI ACTGGG 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 495
BsaJI CCNNGG 3 cut(s) 33, 114, 663
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 3 cut(s) 316, 378, 596
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 2 cut(s) 184, 321
Bse21I CCTNAGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 657
Bse8I GATNNNNATC 1 cut(s) 495
BseDI CCNNGG 3 cut(s) 33, 114, 663
BseGI GGATG 4 cut(s) 173, 337, 406, 613
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 3 cut(s) 316, 378, 596
BseMI GCAATG 1 cut(s) 657
BseMII CTCAG 2 cut(s) 48, 107
BseNI ACTGG 2 cut(s) 184, 321
BseXI GCAGC 4 cut(s) 73, 76, 292, 420
BshFI GGCC 2 cut(s) 635, 656
BshTI ACCGGT 1 cut(s) 47
BsiSI CCGG 1 cut(s) 48
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 3 cut(s) 316, 378, 596
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 2 cut(s) 635, 656
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 3 cut(s) 110, 390, 490
Bsp1720I GCTNAGC 1 cut(s) 57
Bsp19I CCATGG 1 cut(s) 663
BspACI CCGC 1 cut(s) 500
BspANI GGCC 2 cut(s) 635, 656
BspCNI CTCAG 2 cut(s) 49, 106
BspLI GGNNCC 4 cut(s) 90, 112, 492, 588
BspMI ACCTGC 1 cut(s) 229
BspPI GGATC 5 cut(s) 105, 118, 385, 485, 498
BspQI GCTCTTC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 657
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 2 cut(s) 184, 321
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 33, 114, 663
BssMI GATC 3 cut(s) 110, 390, 490
BssT1I CCWWGG 2 cut(s) 114, 663
Bst6I CTCTTC 2 cut(s) 317, 345
BstC8I GCNNGC 4 cut(s) 218, 406, 435, 633
BstDEI CTNAG 3 cut(s) 57, 93, 726
BstDSI CCRYGG 1 cut(s) 663
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 4 cut(s) 173, 337, 406, 613
BstKTI GATC 3 cut(s) 113, 393, 493
BstMBI GATC 3 cut(s) 110, 390, 490
BstMWI GCNNNNNNNGC 1 cut(s) 668
BstNSI RCATGY 1 cut(s) 220
BstV1I GCAGC 4 cut(s) 73, 76, 292, 420
BstX2I RGATCY 3 cut(s) 110, 390, 490
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 3 cut(s) 110, 390, 490
Bsu36I CCTNAGG 1 cut(s) 93
BsuI GTATCC 2 cut(s) 264, 507
BsuRI GGCC 2 cut(s) 635, 656
BtgI CCRYGG 1 cut(s) 663
BtsCI GGATG 4 cut(s) 173, 337, 406, 613
BtsIMutI CAGTG 3 cut(s) 177, 513, 714
BveI ACCTGC 1 cut(s) 229
Cac8I GCNNGC 4 cut(s) 218, 406, 435, 633
CaiI CAGNNNCTG 1 cut(s) 244
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 359
CspAI ACCGGT 1 cut(s) 47
CviAII CATG 5 cut(s) 194, 217, 344, 652, 664
CviJI RGCY 9 cut(s) 31, 232, 338, 382, 433, 443, 635, 656, 671
CviKI_1 RGCY 9 cut(s) 31, 232, 338, 382, 433, 443, 635, 656, 671
DdeI CTNAG 3 cut(s) 57, 93, 726
DpnI GATC 3 cut(s) 112, 392, 492
DpnII GATC 3 cut(s) 110, 390, 490
EaeI YGGCCR 1 cut(s) 654
Eam1104I CTCTTC 2 cut(s) 317, 345
EarI CTCTTC 2 cut(s) 317, 345
Eco130I CCWWGG 2 cut(s) 114, 663
Eco24I GRGCYC 1 cut(s) 33
Eco32I GATATC 1 cut(s) 640
Eco47I GGWCC 1 cut(s) 359
Eco57I CTGAAG 2 cut(s) 254, 359
Eco81I CCTNAGG 1 cut(s) 93
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoO109I RGGNCCY 1 cut(s) 359
EcoRI GAATTC 1 cut(s) 40
EcoRV GATATC 1 cut(s) 640
EcoT14I CCWWGG 2 cut(s) 114, 663
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 2 cut(s) 114, 663
FaeI CATG 5 cut(s) 197, 220, 347, 655, 667
FaqI GGGAC 1 cut(s) 215
FatI CATG 5 cut(s) 193, 216, 343, 651, 663
Fnu4HI GCNGC 4 cut(s) 62, 65, 281, 409
FokI GGATG 4 cut(s) 160, 344, 413, 620
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 4 cut(s) 62, 65, 281, 409
FspBI CTAG 5 cut(s) 161, 273, 311, 440, 446
GluI GCNGC 4 cut(s) 62, 65, 281, 409
HaeIII GGCC 2 cut(s) 635, 656
HapII CCGG 1 cut(s) 48
Hin1II CATG 5 cut(s) 197, 220, 347, 655, 667
HindIII AAGCTT 2 cut(s) 431, 669
HinfI GANTC 2 cut(s) 119, 566
HpaII CCGG 1 cut(s) 48
HphI GGTGA 5 cut(s) 62, 155, 331, 475, 611
Hpy188I TCNGA 4 cut(s) 250, 378, 565, 697
Hpy188III TCNNGA 3 cut(s) 26, 257, 446
Hpy99I CGWCG 1 cut(s) 647
HpyAV CCTTC 2 cut(s) 350, 383
HpyCH4V TGCA 6 cut(s) 173, 263, 404, 514, 574, 712
HpyF10VI GCNNNNNNNGC 1 cut(s) 668
HpyF3I CTNAG 3 cut(s) 57, 93, 726
Hsp92II CATG 5 cut(s) 197, 220, 347, 655, 667
Kzo9I GATC 3 cut(s) 110, 390, 490
LguI GCTCTTC 1 cut(s) 345
Lsp1109I GCAGC 4 cut(s) 73, 76, 292, 420
LweI GCATC 5 cut(s) 43, 182, 250, 391, 420
MaeI CTAG 5 cut(s) 161, 273, 311, 440, 446
MaeIII GTNAC 2 cut(s) 463, 599
MalI GATC 3 cut(s) 112, 392, 492
MboI GATC 3 cut(s) 110, 390, 490
MboII GAAGA 4 cut(s) 332, 334, 557, 689
MflI RGATCY 3 cut(s) 110, 390, 490
MhlI GDGCHC 1 cut(s) 33
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 5 cut(s) 21, 40, 206, 285, 703
MluNI TGGCCA 1 cut(s) 656
MlyI GAGTC 2 cut(s) 113, 560
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 8 cut(s) 43, 102, 146, 318, 372, 372, 434, 616
Mox20I TGGCCA 1 cut(s) 656
MroXI GAANNNNTTC 1 cut(s) 339
MscI TGGCCA 1 cut(s) 656
MseI TTAA 2 cut(s) 101, 209
MslI CAYNNNNRTG 1 cut(s) 662
Msp20I TGGCCA 1 cut(s) 656
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 668
NcoI CCATGG 1 cut(s) 663
NdeII GATC 3 cut(s) 110, 390, 490
NlaIII CATG 5 cut(s) 197, 220, 347, 655, 667
NlaIV GGNNCC 4 cut(s) 90, 112, 492, 588
NmeAIII GCCGAG 1 cut(s) 14
NmuCI GTSAC 2 cut(s) 463, 599
NspI RCATGY 1 cut(s) 220
PaeI GCATGC 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 345
PdmI GAANNNNTTC 1 cut(s) 339
PinAI ACCGGT 1 cut(s) 47
PkrI GCNGC 4 cut(s) 63, 66, 282, 410
PleI GAGTC 2 cut(s) 113, 560
PpsI GAGTC 2 cut(s) 113, 560
PpuMI RGGWCCY 1 cut(s) 359
Psp5II RGGWCCY 1 cut(s) 359
PspN4I GGNNCC 4 cut(s) 90, 112, 492, 588
PspPI GGNCC 1 cut(s) 359
PspPPI RGGWCCY 1 cut(s) 359
PstNI CAGNNNCTG 1 cut(s) 244
PsuI RGATCY 3 cut(s) 110, 390, 490
PvuII CAGCTG 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 662
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 2 cut(s) 101, 209
SatI GCNGC 4 cut(s) 62, 65, 281, 409
Sau3AI GATC 3 cut(s) 110, 390, 490
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 2 cut(s) 113, 560
SduI GDGCHC 1 cut(s) 33
SfaNI GCATC 5 cut(s) 43, 182, 250, 391, 420
SinI GGWCC 1 cut(s) 359
SmiMI CAYNNNNRTG 1 cut(s) 662
SpeI ACTAGT 1 cut(s) 272
SphI GCATGC 1 cut(s) 220
Sse9I AATT 5 cut(s) 21, 40, 206, 285, 703
SsiI CCGC 1 cut(s) 500
SspMI CTAG 5 cut(s) 161, 273, 311, 440, 446
StyI CCWWGG 2 cut(s) 114, 663
TaqI TCGA 1 cut(s) 642
TasI AATT 5 cut(s) 21, 40, 206, 285, 703
Tru1I TTAA 2 cut(s) 101, 209
Tru9I TTAA 2 cut(s) 101, 209
TscAI CASTG 3 cut(s) 184, 513, 714
TseFI GTSAC 2 cut(s) 463, 599
TseI GCWGC 4 cut(s) 61, 64, 280, 408
Tsp45I GTSAC 2 cut(s) 463, 599
TspDTI ATGAA 5 cut(s) 33, 332, 348, 540, 624
TspGWI ACGGA 3 cut(s) 123, 483, 503
TspRI CASTG 3 cut(s) 184, 513, 714
VpaK11BI GGWCC 1 cut(s) 359
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 3 cut(s) 21, 40, 703
XbaI TCTAGA 1 cut(s) 445
XceI RCATGY 1 cut(s) 220
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 5 cut(s) 161, 273, 311, 440, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.