Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002676

Physical Location & Seq

Genomic Coordinates Forward (+)

47928863 .. 47932001

Gene Structure 3139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG421000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAACTAAGAGAAGCTGCAACAACTGAGGTTGATACTGGAATCGAGTGTATATTGAACCGATTGGAGAAACAAAAAAATTTGACTCTTGGGTTTGTTTTGAGAGATAAAGAAGACAGTACTGGCCTCGCAAATAATGATAACAAACATGATCGGTGTCCTGATACCTCAACTGATGCATTGCTTGATGACTTACTAGGAAGATTTGGAGAATGCCAATGGAGGAGTTATTGGGAATCAATGAAATCAGAAGTAGCTGATATGGTCAAAACTGGTGGTTGTCCAGGTGGTGCTATTAGTGCAGCTCTCTTCTTGAAACAGGCATGCATGCTATCCTTTCAGCTGAAGCAGATTCTGTCAGAGTATCCTGATGCAGAAAAGACTAGTGAGCAGCAAATTACTACTTCAGGAGAAACCTACCTAGAACTGGTGAAGAGGTTGTATGAAGCTCTTCATGGTTTTACCGAAGGTCCTCCATTTACCCTTCAGAGGCTTTGTGAGGCTATTGAATCAGAAAGCCAAGAATTGGAGCTGGATCTTTCAAGTTTGGGTGCTGTAAATACCATGTTTGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

192

Amino Acids

21.37

Weight (kDa)

4.49

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17070 AT5G17070
fragaria_vesca	FvH4_7g33790 FvH4_7g33790 FvH4_7g33790 FvH4_7g33790
malus_domestica	MD01G1234200.v1.1 MD07G1306400.v1.1
prunus_persica	Prupe.2G324400_v2.0.a1 Prupe.2G324400_v2.0.a1
pyrus_communis	pycom01g24270 pycom07g27940
rosa_chinensis	RchiOBHm_Chr1g0383921
rosa_laevigata	RLG00000026086
rosa_multiflora	Rmu_co8486869.1_g000001 Rmu_sc0005139.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277150
rosa_rugosa	Rorug01G0443000
rosa_samantha	Rh1AG189200 Rh1AG469000 Rh1BG426700 Rh1CG439500 Rh1DG459500 Rh2AG256200 Rh2AG256300 Rh2AG293800 Rh2BG193800 Rh2CG261600 Rh2DG264600 Rh4DG441900 Rh5AG227200 Rh5AG268100 Rh5BG209000 Rh5BG286400 Rh6CG067100 Rh6DG064000 Rh7BG421000
rosa_wichuraiana	Rw1G002380 Rw1G040340 Rw5G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	526
AclWI	GGATC	1 cut(s)	543
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	3 cut(s)	365, 390, 470
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	3 cut(s)	427, 489, 526
AgsI	TTSAA	4 cut(s)	58, 316, 509, 543
AhlI	ACTAGT	1 cut(s)	383
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	6 cut(s)	17, 257, 305, 343, 449, 532
AluI	AGCT	6 cut(s)	17, 257, 305, 343, 449, 532
AlwI	GGATC	1 cut(s)	543
AlwNI	CAGNNNCTG	1 cut(s)	355
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	3 cut(s)	17, 302, 391
ApoI	RAATTY	1 cut(s)	79
Asp700I	GAANNNNTTC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	4, 314, 403
BciT130I	CCWGG	1 cut(s)	285
BciVI	GTATCC	1 cut(s)	375
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	3 cut(s)	197, 384, 422
BfuI	GTATCC	1 cut(s)	375
BisI	GCNGC	3 cut(s)	18, 303, 392
BlsI	GCNGC	3 cut(s)	19, 304, 393
BmcAI	AGTACT	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	2 cut(s)	166, 361
BpiI	GAAGAC	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	3 cut(s)	427, 489, 526
Bse1I	ACTGG	4 cut(s)	43, 127, 277, 432
Bse3DI	GCAATG	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	285
BseLI	CCNNNNNNNGG	3 cut(s)	427, 489, 526
BseMI	GCAATG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	4 cut(s)	43, 127, 277, 432
BseRI	GAGGAG	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	4, 314, 403
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	126
BslI	CCNNNNNNNGG	3 cut(s)	427, 489, 526
BsmI	GAATGC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	151, 535
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	19
BspPI	GGATC	1 cut(s)	543
BspQI	GCTCTTC	1 cut(s)	456
BsrDI	GCAATG	1 cut(s)	179
BsrI	ACTGG	4 cut(s)	43, 127, 277, 432
BssMI	GATC	2 cut(s)	151, 535
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	3 cut(s)	314, 428, 456
BstC8I	GCNNGC	2 cut(s)	325, 329
BstDEI	CTNAG	2 cut(s)	8, 27
BstKTI	GATC	2 cut(s)	154, 538
BstMBI	GATC	2 cut(s)	151, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	2 cut(s)	327, 331
BstSCI	CCNGG	1 cut(s)	283
BstV1I	GCAGC	3 cut(s)	4, 314, 403
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	325, 329
CaiI	CAGNNNCTG	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	470
Csp6I	GTAC	1 cut(s)	120
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviAII	CATG	5 cut(s)	149, 324, 328, 455, 565
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	2 cut(s)	8, 27
DpnI	GATC	2 cut(s)	153, 537
DpnII	GATC	2 cut(s)	151, 535
Eam1104I	CTCTTC	3 cut(s)	314, 428, 456
EarI	CTCTTC	3 cut(s)	314, 428, 456
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	3 cut(s)	365, 390, 470
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	283
EcoT22I	ATGCAT	2 cut(s)	181, 329
FaeI	CATG	5 cut(s)	152, 327, 331, 458, 568
FaiI	YATR	8 cut(s)	53, 150, 263, 325, 329, 444, 456, 566
FatI	CATG	5 cut(s)	148, 323, 327, 454, 564
Fnu4HI	GCNGC	3 cut(s)	18, 303, 392
Fsp4HI	GCNGC	3 cut(s)	18, 303, 392
FspBI	CTAG	3 cut(s)	197, 384, 422
GluI	GCNGC	3 cut(s)	18, 303, 392
HaeIII	GGCC	1 cut(s)	126
Hin1II	CATG	5 cut(s)	152, 327, 331, 458, 568
HinfI	GANTC	5 cut(s)	42, 85, 236, 352, 509
HphI	GGTGA	1 cut(s)	442
Hpy188I	TCNGA	4 cut(s)	250, 361, 489, 514
Hpy188III	TCNNGA	4 cut(s)	161, 313, 368, 408
HpyAV	CCTTC	2 cut(s)	461, 494
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	5 cut(s)	20, 179, 302, 327, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	8, 27
Hsp92II	CATG	5 cut(s)	152, 327, 331, 458, 568
Kzo9I	GATC	2 cut(s)	151, 535
LguI	GCTCTTC	1 cut(s)	456
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	3 cut(s)	4, 314, 403
LweI	GCATC	2 cut(s)	166, 361
MaeI	CTAG	3 cut(s)	197, 384, 422
MalI	GATC	2 cut(s)	153, 537
MboI	GATC	2 cut(s)	151, 535
MboII	GAAGA	5 cut(s)	125, 213, 301, 443, 445
MflI	RGATCY	1 cut(s)	535
MluCI	AATT	3 cut(s)	79, 396, 524
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	8 cut(s)	22, 137, 178, 216, 429, 483, 483, 493
Mph1103I	ATGCAT	2 cut(s)	181, 329
MroXI	GAANNNNTTC	1 cut(s)	450
MspA1I	CMGCKG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	2 cut(s)	151, 535
NlaIII	CATG	5 cut(s)	152, 327, 331, 458, 568
NsiI	ATGCAT	2 cut(s)	181, 329
NspI	RCATGY	2 cut(s)	327, 331
PaeI	GCATGC	2 cut(s)	327, 331
PciSI	GCTCTTC	1 cut(s)	456
PctI	GAATGC	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	4 cut(s)	42, 236, 352, 509
PflMI	CCANNNNNTGG	1 cut(s)	526
PkrI	GCNGC	3 cut(s)	19, 304, 393
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PpuMI	RGGWCCY	1 cut(s)	470
Psp5II	RGGWCCY	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	470
PspPPI	RGGWCCY	1 cut(s)	470
PstNI	CAGNNNCTG	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	456
SatI	GCNGC	3 cut(s)	18, 303, 392
Sau3AI	GATC	2 cut(s)	151, 535
Sau96I	GGNCC	1 cut(s)	470
ScaI	AGTACT	1 cut(s)	121
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	285
SfaNI	GCATC	2 cut(s)	166, 361
SinI	GGWCC	1 cut(s)	470
SpeI	ACTAGT	1 cut(s)	383
SphI	GCATGC	2 cut(s)	327, 331
Sse9I	AATT	3 cut(s)	79, 396, 524
SspMI	CTAG	3 cut(s)	197, 384, 422
StyD4I	CCNGG	1 cut(s)	283
TaaI	ACNGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	79, 396, 524
TatI	WGTACW	1 cut(s)	119
TfiI	GAWTC	4 cut(s)	42, 236, 352, 509
TseI	GCWGC	3 cut(s)	17, 302, 391
TspDTI	ATGAA	3 cut(s)	257, 443, 459
Van91I	CCANNNNNTGG	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	470
XapI	RAATTY	1 cut(s)	79
XceI	RCATGY	2 cut(s)	327, 331
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	3 cut(s)	197, 384, 422
ZrmI	AGTACT	1 cut(s)	121
Zsp2I	ATGCAT	2 cut(s)	181, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.