Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002676

Physical Location & Seq

Genomic Coordinates Forward (+)

21232535 .. 21234836

Gene Structure 2302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCTGATCGATCAACAGGAGGCCATGCTTTCCGACGGCGTAGATAATCTAGGTAAAGAGTCGAAGCTGGAGGTTTCTGAAACAGAAGTTAGAGGCGTACTACAAGTTATTGCATCCACCGGGAAATTTTGGCATGATTGGGACAAATTAAAGAGCATGCTATCCTTTCAACTGAAGCAGGTTCTGTTGGATTATCCTGAGGAAGAAATGGCAAGTGAGCAGCAAATTGCTTCTCTAGGAGAAACCTATCCTGAGCTGGTGAAGAGGTTGGATGAAGCTCTTCATAGTTTTACTGAAGGTCCTCCGTTTACCCTTCAGAGGCTTTGCGAGATCCTATTGGATGCAAAAAGAATCTATCCAAATCCCTCAAAGCTTGCTCTTGCATTAGAAAAGAATCTATTGGTGACATCTATGCTGACAGCCTCAACGGATCCATATCCACAATCCACGGTGCAAAATTCAGTTGAACCAGACAAAGCAATTGAAGAAGCTAAAATTCACTCTGATTCAGTAGCGCAAAATGGGGTGGAACCTATGGTAAGCGGCGATATGGATGAAGTTATGTCAGAGGTAGAGCAAGCTGATATCGATAATGATATGACCATCGCCATGGAAGCTTTTGAAGATATAGTGGGATCATCAGACGCAAATTCAGTGCAGACCAATGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

225

Amino Acids

24.81

Weight (kDa)

4.17

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17070 AT5G17070
fragaria_vesca	FvH4_7g33790 FvH4_7g33790 FvH4_7g33790 FvH4_7g33790
malus_domestica	MD01G1234200.v1.1 MD07G1306400.v1.1
prunus_persica	Prupe.2G324400_v2.0.a1 Prupe.2G324400_v2.0.a1
pyrus_communis	pycom01g24270 pycom07g27940
rosa_chinensis	RchiOBHm_Chr1g0383921
rosa_laevigata	RLG00000026086
rosa_multiflora	Rmu_co8486869.1_g000001 Rmu_sc0005139.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277150
rosa_rugosa	Rorug01G0443000
rosa_samantha	Rh1AG189200 Rh1AG469000 Rh1BG426700 Rh1CG439500 Rh1DG459500 Rh2AG256200 Rh2AG256300 Rh2AG293800 Rh2BG193800 Rh2CG261600 Rh2DG264600 Rh4DG441900 Rh5AG227200 Rh5AG268100 Rh5BG209000 Rh5BG286400 Rh6CG067100 Rh6DG064000 Rh7BG421000
rosa_wichuraiana	Rw1G002380 Rw1G040340 Rw5G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
AciI	CCGC	1 cut(s)	543
AclWI	GGATC	4 cut(s)	325, 425, 438, 643
AcsI	RAATTY	4 cut(s)	125, 457, 495, 649
AcuI	CTGAAG	3 cut(s)	194, 299, 315
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	318
AgsI	TTSAA	4 cut(s)	170, 467, 485, 623
AluBI	AGCT	7 cut(s)	67, 256, 278, 373, 491, 581, 617
AluI	AGCT	7 cut(s)	67, 256, 278, 373, 491, 581, 617
AlwI	GGATC	4 cut(s)	325, 425, 438, 643
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	4 cut(s)	125, 457, 495, 649
Asp700I	GAANNNNTTC	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	271, 415
AvaII	GGWCC	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	198
BamHI	GGATCC	1 cut(s)	430
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	1 cut(s)	611
BceAI	ACGGC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	121
BfaI	CTAG	2 cut(s)	50, 236
BfuAI	ACCTGC	1 cut(s)	169
BisI	GCNGC	2 cut(s)	221, 544
BlsI	GCNGC	2 cut(s)	222, 545
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	2 cut(s)	432, 531
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	2 cut(s)	122, 331
BpmI	CTGGAG	1 cut(s)	89
Bpu10I	CCTNAGC	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	121
Bsa29I	ATCGAT	2 cut(s)	9, 588
BsaBI	GATNNNNATC	1 cut(s)	435
BsaJI	CCNNGG	2 cut(s)	447, 609
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse21I	CCTNAGG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	435
BseCI	ATCGAT	2 cut(s)	9, 588
BseDI	CCNNGG	2 cut(s)	447, 609
BseGI	GGATG	4 cut(s)	113, 277, 346, 559
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMII	CTCAG	2 cut(s)	189, 243
BseXI	GCAGC	1 cut(s)	232
BshFI	GGCC	1 cut(s)	23
BshVI	ATCGAT	2 cut(s)	9, 588
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	23
Bsp143I	GATC	5 cut(s)	6, 10, 330, 430, 635
Bsp19I	CCATGG	1 cut(s)	609
BspACI	CCGC	1 cut(s)	543
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	2 cut(s)	190, 244
BspDI	ATCGAT	2 cut(s)	9, 588
BspLI	GGNNCC	2 cut(s)	432, 531
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	4 cut(s)	325, 425, 438, 643
BspQI	GCTCTTC	1 cut(s)	285
BssECI	CCNNGG	2 cut(s)	447, 609
BssMI	GATC	5 cut(s)	6, 10, 330, 430, 635
BssT1I	CCWWGG	1 cut(s)	609
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	2 cut(s)	257, 285
BstC8I	GCNNGC	3 cut(s)	158, 375, 579
BstDEI	CTNAG	3 cut(s)	198, 252, 672
BstDSI	CCRYGG	2 cut(s)	447, 609
BstF5I	GGATG	4 cut(s)	113, 277, 346, 559
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	5 cut(s)	9, 13, 333, 433, 638
BstMBI	GATC	5 cut(s)	6, 10, 330, 430, 635
BstMWI	GCNNNNNNNGC	1 cut(s)	614
BstNSI	RCATGY	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	232
BstX2I	RGATCY	2 cut(s)	330, 430
BstXI	CCANNNNNNTGG	1 cut(s)	610
BstYI	RGATCY	2 cut(s)	330, 430
Bsu15I	ATCGAT	2 cut(s)	9, 588
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	23
BsuTUI	ATCGAT	2 cut(s)	9, 588
BtgI	CCRYGG	2 cut(s)	447, 609
BtgZI	GCGATG	1 cut(s)	589
BtsCI	GGATG	4 cut(s)	113, 277, 346, 559
BtsIMutI	CAGTG	1 cut(s)	660
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	3 cut(s)	158, 375, 579
CaiI	CAGNNNCTG	1 cut(s)	184
CfoI	GCGC	1 cut(s)	517
Cfr13I	GGNCC	1 cut(s)	299
ClaI	ATCGAT	2 cut(s)	9, 588
CseI	GACGC	1 cut(s)	653
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	4 cut(s)	25, 134, 157, 610
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	3 cut(s)	198, 252, 672
DpnI	GATC	5 cut(s)	8, 12, 332, 432, 637
DpnII	GATC	5 cut(s)	6, 10, 330, 430, 635
Eam1104I	CTCTTC	2 cut(s)	257, 285
EarI	CTCTTC	2 cut(s)	257, 285
Eco130I	CCWWGG	1 cut(s)	609
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	3 cut(s)	194, 299, 315
Eco81I	CCTNAGG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	4 cut(s)	28, 137, 160, 613
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	4 cut(s)	24, 133, 156, 609
Fnu4HI	GCNGC	2 cut(s)	221, 544
FokI	GGATG	4 cut(s)	100, 284, 353, 566
Fsp4HI	GCNGC	2 cut(s)	221, 544
FspBI	CTAG	2 cut(s)	50, 236
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	2 cut(s)	221, 544
GsuI	CTGGAG	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	120
HgaI	GACGC	1 cut(s)	653
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	4 cut(s)	28, 137, 160, 613
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HindIII	AAGCTT	2 cut(s)	371, 615
HinfI	GANTC	5 cut(s)	59, 351, 394, 506, 668
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	2 cut(s)	271, 415
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	6 cut(s)	34, 79, 318, 505, 568, 643
Hpy188III	TCNNGA	2 cut(s)	197, 251
Hpy8I	GTNNAC	1 cut(s)	309
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	290, 323
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4V	TGCA	5 cut(s)	113, 344, 383, 454, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	614
HpyF3I	CTNAG	3 cut(s)	198, 252, 672
Hsp92II	CATG	4 cut(s)	28, 137, 160, 613
HspAI	GCGC	1 cut(s)	515
Kzo9I	GATC	5 cut(s)	6, 10, 330, 430, 635
LguI	GCTCTTC	1 cut(s)	285
LpnPI	CCDG	8 cut(s)	2, 53, 133, 164, 210, 242, 264, 483
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	2 cut(s)	122, 331
MaeI	CTAG	2 cut(s)	50, 236
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	5 cut(s)	8, 12, 332, 432, 637
MboI	GATC	5 cut(s)	6, 10, 330, 430, 635
MboII	GAAGA	5 cut(s)	215, 272, 274, 497, 635
MfeI	CAATTG	1 cut(s)	480
MflI	RGATCY	2 cut(s)	330, 430
MluCI	AATT	7 cut(s)	125, 146, 225, 457, 480, 495, 649
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	3 cut(s)	57, 168, 249
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	1 cut(s)	149
MslI	CAYNNNNRTG	1 cut(s)	608
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	121
MunI	CAATTG	1 cut(s)	480
MwoI	GCNNNNNNNGC	1 cut(s)	614
NciI	CCSGG	1 cut(s)	121
NcoI	CCATGG	1 cut(s)	609
NdeII	GATC	5 cut(s)	6, 10, 330, 430, 635
NlaIII	CATG	4 cut(s)	28, 137, 160, 613
NlaIV	GGNNCC	2 cut(s)	432, 531
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	1 cut(s)	160
PaeI	GCATGC	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	4 cut(s)	351, 394, 506, 668
PkrI	GCNGC	2 cut(s)	222, 545
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	299
PspN4I	GGNNCC	2 cut(s)	432, 531
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	2 cut(s)	330, 430
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	608
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	2 cut(s)	221, 544
Sau3AI	GATC	5 cut(s)	6, 10, 330, 430, 635
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	121
SfaNI	GCATC	2 cut(s)	122, 331
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	608
SphI	GCATGC	1 cut(s)	160
Sse9I	AATT	7 cut(s)	125, 146, 225, 457, 480, 495, 649
SsiI	CCGC	1 cut(s)	543
SspMI	CTAG	2 cut(s)	50, 236
StyD4I	CCNGG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	1 cut(s)	451
TaqI	TCGA	3 cut(s)	9, 62, 588
TasI	AATT	7 cut(s)	125, 146, 225, 457, 480, 495, 649
TauI	GCSGC	1 cut(s)	546
TfiI	GAWTC	4 cut(s)	351, 394, 506, 668
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	3 cut(s)	272, 288, 570
TspGWI	ACGGA	2 cut(s)	294, 443
TspRI	CASTG	1 cut(s)	660
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	4 cut(s)	125, 457, 495, 649
XceI	RCATGY	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	2 cut(s)	50, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.