Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002676

Physical Location & Seq

Genomic Coordinates Forward (+)

23955342 .. 23958480

Gene Structure 3139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33790.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAGATACAACCATCAAATGAGGTTCCACCGCCGTCGGTGAACTCAGCCAGTGATGCTGAGCAACCACATGATGATGCTGTGGTGCCTGATGCATCGAATCACGAATCCAAGGAGTCCAAGAATGAGATTGCTGATGGTGAAGTTAGAGGCATACTGGAAGTTATTGCATCCACTGGGAGATTTTGGCATGATTGGGATAAGTTAAAGGGCATGCTATCCTTTCAGCTGAAGCAGGTTCTGTCAGAGTATCCTGATGCAGAAAAGACTAGCGAGCAGCAAAATACTGCTTTAGGAGAAACTTACCTAGAACTGGTGAAGAGGTTGGATGAAGCTCTTCATGGTTTTACCGAAGGTCCTCCATTTACGCTTCAAAGGCTCTGTGAGATCCTTTTGGATGCACGCAGAATCTACCCAAACCTCTCAAAGCTTGCTCTAGCTCTAGAAAAGAACCTATTGGTGACATCTATGCTGACTATCTCAACGGATCCGTATCCGCAATCAGCGTTGCAAAATGCAGTTGAACCAGAAAAAGCAAGTGAAGAACCTAAACTTCACTCTGACTCGATGCAAAATGGGGTGGAACCTATGGTAGGTGACAGGGATGAAGTGATGGTAGAGGTTGAGCAGGCTGATATTGACGATGACATGGCCATTGCCATGGAAGCTTTTGAAGATATAGTTTCATCAGAAACAAATTCAGTACAGACCAATAACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

241

Amino Acids

26.6

Weight (kDa)

4.27

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17070 AT5G17070
fragaria_vesca	FvH4_7g33790 FvH4_7g33790 FvH4_7g33790 FvH4_7g33790
malus_domestica	MD01G1234200.v1.1 MD07G1306400.v1.1
prunus_persica	Prupe.2G324400_v2.0.a1 Prupe.2G324400_v2.0.a1
pyrus_communis	pycom01g24270 pycom07g27940
rosa_chinensis	RchiOBHm_Chr1g0383921
rosa_laevigata	RLG00000026086
rosa_multiflora	Rmu_co8486869.1_g000001 Rmu_sc0005139.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277150
rosa_rugosa	Rorug01G0443000
rosa_samantha	Rh1AG189200 Rh1AG469000 Rh1BG426700 Rh1CG439500 Rh1DG459500 Rh2AG256200 Rh2AG256300 Rh2AG293800 Rh2BG193800 Rh2CG261600 Rh2DG264600 Rh4DG441900 Rh5AG227200 Rh5AG268100 Rh5BG209000 Rh5BG286400 Rh6CG067100 Rh6DG064000 Rh7BG421000
rosa_wichuraiana	Rw1G002380 Rw1G040340 Rw5G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	226
AccB1I	GGYRCC	1 cut(s)	85
AciI	CCGC	2 cut(s)	32, 497
AclWI	GGATC	3 cut(s)	382, 482, 495
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	1 cut(s)	697
AcuI	CTGAAG	1 cut(s)	251
AfaI	GTAC	1 cut(s)	705
AfiI	CCNNNNNNNGG	2 cut(s)	313, 593
AgsI	TTSAA	3 cut(s)	374, 524, 674
AluBI	AGCT	5 cut(s)	229, 335, 430, 440, 668
AluI	AGCT	5 cut(s)	229, 335, 430, 440, 668
AlwI	GGATC	3 cut(s)	382, 482, 495
AlwNI	CAGNNNCTG	1 cut(s)	241
AoxI	GGCC	1 cut(s)	651
ApeKI	GCWGC	1 cut(s)	277
ApoI	RAATTY	1 cut(s)	697
Asp700I	GAANNNNTTC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	5 cut(s)	52, 152, 328, 472, 608
AvaII	GGWCC	1 cut(s)	356
BalI	TGGCCA	1 cut(s)	653
BamHI	GGATCC	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	3 cut(s)	22, 131, 607
BceAI	ACGGC	1 cut(s)	19
BciVI	GTATCC	2 cut(s)	261, 504
BfaI	CTAG	4 cut(s)	270, 308, 437, 443
BfuAI	ACCTGC	1 cut(s)	226
BfuI	GTATCC	2 cut(s)	261, 504
BisI	GCNGC	1 cut(s)	278
BlpI	GCTNAGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	4 cut(s)	27, 87, 489, 585
BmrI	ACTGGG	1 cut(s)	186
BmsI	GCATC	8 cut(s)	46, 67, 82, 104, 179, 247, 388, 558
BmuI	ACTGGG	1 cut(s)	186
Bpu1102I	GCTNAGC	1 cut(s)	60
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	2 cut(s)	111, 660
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 593
Bse1I	ACTGG	4 cut(s)	51, 162, 181, 318
Bse3DI	GCAATG	1 cut(s)	654
Bse8I	GATNNNNATC	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	111, 660
BseGI	GGATG	4 cut(s)	170, 334, 403, 610
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	2 cut(s)	313, 593
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	2 cut(s)	51, 60
BseNI	ACTGG	4 cut(s)	51, 162, 181, 318
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	1 cut(s)	653
BshNI	GGYRCC	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	313, 593
BsnI	GGCC	1 cut(s)	653
Bsp143I	GATC	2 cut(s)	387, 487
Bsp1720I	GCTNAGC	1 cut(s)	60
Bsp19I	CCATGG	1 cut(s)	660
BspACI	CCGC	2 cut(s)	32, 497
BspANI	GGCC	1 cut(s)	653
BspCNI	CTCAG	2 cut(s)	52, 59
BspLI	GGNNCC	4 cut(s)	27, 87, 489, 585
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	3 cut(s)	382, 482, 495
BspQI	GCTCTTC	1 cut(s)	342
BspT107I	GGYRCC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	654
BsrI	ACTGG	4 cut(s)	51, 162, 181, 318
BssECI	CCNNGG	2 cut(s)	111, 660
BssMI	GATC	2 cut(s)	387, 487
BssT1I	CCWWGG	2 cut(s)	111, 660
Bst6I	CTCTTC	2 cut(s)	314, 342
BstC8I	GCNNGC	5 cut(s)	215, 275, 403, 432, 630
BstDEI	CTNAG	3 cut(s)	46, 60, 720
BstDSI	CCRYGG	1 cut(s)	660
BstENI	CCTNNNNNAGG	1 cut(s)	591
BstF5I	GGATG	4 cut(s)	170, 334, 403, 610
BstKTI	GATC	2 cut(s)	390, 490
BstMBI	GATC	2 cut(s)	387, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 376, 665
BstNSI	RCATGY	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	289
BstX2I	RGATCY	2 cut(s)	387, 487
BstXI	CCANNNNNNTGG	1 cut(s)	661
BstYI	RGATCY	2 cut(s)	387, 487
BsuI	GTATCC	2 cut(s)	261, 504
BsuRI	GGCC	1 cut(s)	653
BtgI	CCRYGG	1 cut(s)	660
BtsCI	GGATG	4 cut(s)	170, 334, 403, 610
BtsIMutI	CAGTG	2 cut(s)	58, 174
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	5 cut(s)	215, 275, 403, 432, 630
CaiI	CAGNNNCTG	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	704
CviAII	CATG	6 cut(s)	71, 191, 214, 341, 649, 661
CviJI	RGCY	9 cut(s)	50, 229, 335, 379, 430, 440, 632, 653, 668
CviKI_1	RGCY	9 cut(s)	50, 229, 335, 379, 430, 440, 632, 653, 668
CviQI	GTAC	1 cut(s)	704
DdeI	CTNAG	3 cut(s)	46, 60, 720
DpnI	GATC	2 cut(s)	389, 489
DpnII	GATC	2 cut(s)	387, 487
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	2 cut(s)	314, 342
EarI	CTCTTC	2 cut(s)	314, 342
Eco130I	CCWWGG	2 cut(s)	111, 660
Eco47I	GGWCC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	591
EcoO109I	RGGNCCY	1 cut(s)	356
EcoT14I	CCWWGG	2 cut(s)	111, 660
EcoT22I	ATGCAT	1 cut(s)	97
ErhI	CCWWGG	2 cut(s)	111, 660
FaeI	CATG	6 cut(s)	74, 194, 217, 344, 652, 664
FatI	CATG	6 cut(s)	70, 190, 213, 340, 648, 660
Fnu4HI	GCNGC	1 cut(s)	278
FokI	GGATG	4 cut(s)	157, 341, 410, 617
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	4 cut(s)	270, 308, 437, 443
GluI	GCNGC	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	653
Hin1II	CATG	6 cut(s)	74, 194, 217, 344, 652, 664
HindIII	AAGCTT	2 cut(s)	428, 666
HinfI	GANTC	5 cut(s)	100, 107, 116, 408, 563
HphI	GGTGA	5 cut(s)	52, 152, 328, 472, 608
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	3 cut(s)	247, 562, 691
Hpy188III	TCNNGA	3 cut(s)	104, 254, 443
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	347
HpyCH4V	TGCA	7 cut(s)	95, 170, 260, 401, 511, 518, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 376, 665
HpyF3I	CTNAG	3 cut(s)	46, 60, 720
Hsp92II	CATG	6 cut(s)	74, 194, 217, 344, 652, 664
Kzo9I	GATC	2 cut(s)	387, 487
LguI	GCTCTTC	1 cut(s)	342
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	8 cut(s)	46, 67, 82, 104, 179, 247, 388, 558
MaeI	CTAG	4 cut(s)	270, 308, 437, 443
MaeIII	GTNAC	2 cut(s)	460, 596
MalI	GATC	2 cut(s)	389, 489
MboI	GATC	2 cut(s)	387, 487
MboII	GAAGA	4 cut(s)	329, 331, 554, 686
MflI	RGATCY	2 cut(s)	387, 487
MlsI	TGGCCA	1 cut(s)	653
MluCI	AATT	1 cut(s)	697
MluNI	TGGCCA	1 cut(s)	653
MlyI	GAGTC	2 cut(s)	125, 557
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	6 cut(s)	16, 143, 315, 369, 431, 613
Mox20I	TGGCCA	1 cut(s)	653
Mph1103I	ATGCAT	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	653
MseI	TTAA	1 cut(s)	206
MslI	CAYNNNNRTG	2 cut(s)	75, 659
Msp20I	TGGCCA	1 cut(s)	653
MspA1I	CMGCKG	1 cut(s)	229
MwoI	GCNNNNNNNGC	3 cut(s)	56, 376, 665
NcoI	CCATGG	1 cut(s)	660
NdeII	GATC	2 cut(s)	387, 487
NlaIII	CATG	6 cut(s)	74, 194, 217, 344, 652, 664
NlaIV	GGNNCC	4 cut(s)	27, 87, 489, 585
NmuCI	GTSAC	2 cut(s)	460, 596
NsiI	ATGCAT	1 cut(s)	97
NspI	RCATGY	1 cut(s)	217
PaeI	GCATGC	1 cut(s)	217
PciSI	GCTCTTC	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	100, 107, 408
PkrI	GCNGC	1 cut(s)	279
PleI	GAGTC	2 cut(s)	124, 557
PpsI	GAGTC	2 cut(s)	124, 557
PpuMI	RGGWCCY	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	356
PspN4I	GGNNCC	4 cut(s)	27, 87, 489, 585
PspPI	GGNCC	1 cut(s)	356
PspPPI	RGGWCCY	1 cut(s)	356
PstNI	CAGNNNCTG	1 cut(s)	241
PsuI	RGATCY	2 cut(s)	387, 487
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	705
RsaNI	GTAC	1 cut(s)	704
RseI	CAYNNNNRTG	2 cut(s)	75, 659
SapI	GCTCTTC	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	2 cut(s)	387, 487
Sau96I	GGNCC	1 cut(s)	356
SchI	GAGTC	2 cut(s)	125, 557
SfaNI	GCATC	8 cut(s)	46, 67, 82, 104, 179, 247, 388, 558
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	2 cut(s)	75, 659
SphI	GCATGC	1 cut(s)	217
Sse9I	AATT	1 cut(s)	697
SsiI	CCGC	2 cut(s)	32, 497
SspMI	CTAG	4 cut(s)	270, 308, 437, 443
StyI	CCWWGG	2 cut(s)	111, 660
TaqI	TCGA	2 cut(s)	98, 566
TasI	AATT	1 cut(s)	697
TatI	WGTACW	1 cut(s)	703
TfiI	GAWTC	3 cut(s)	100, 107, 408
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	2 cut(s)	58, 181
TseFI	GTSAC	2 cut(s)	460, 596
TseI	GCWGC	1 cut(s)	277
Tsp45I	GTSAC	2 cut(s)	460, 596
TspDTI	ATGAA	4 cut(s)	329, 345, 621, 675
TspGWI	ACGGA	2 cut(s)	480, 500
TspRI	CASTG	2 cut(s)	58, 181
VpaK11BI	GGWCC	1 cut(s)	356
XagI	CCTNNNNNAGG	1 cut(s)	591
XapI	RAATTY	1 cut(s)	697
XbaI	TCTAGA	1 cut(s)	442
XceI	RCATGY	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	4 cut(s)	270, 308, 437, 443
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.