Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002676

Physical Location & Seq

Genomic Coordinates Reverse (-)

28503614 .. 28519271

Gene Structure 15658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG264600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTCTGGGGAGGACTCGATGAAGGTGGACTTATTAGTAGGGATGGAGGGGAGTGCTGGTGGTGGTGCCCAGAAGCGGCGATGGTTGGGGGAACTTACGCCGGTGATTGAGGCGATGGCGGTAGATGGCAGCGAGCTACGGGATGCCCCCATTAGTGCAAGCCCTGATCTTTTGCGTGCACTAATGATAATTGGCAAGGATTCTGGGAAGAAAATAATTGTCGAGGATGGAGCAGATGTGGGGGCGGGAATTGCTGTTACTAATCCTGTGGAAGGGCTGGGAGCGGTCTCGAGTGAGATGGCTTTAAATGGGCCTACGGATGGCCTAGGTGAGATGTTGGGTGGTGGGAGTGTAACTATTGGGCCTGTTAAAAAAATGAGCATGCATGGGGGTCAAATGAAGGCTGGTTTGACTCCTAATAGCCCTAAGCCTACTAGGAATAGTGTTGACAAAAGGATAGCTAAAGGAAAGAGGGGTTTTGCTGTCAGTGGGAGGAAAGGGAAAGATCTAGTGGGCAAGGGAGACTCGAAGAAGGATAAATTGAGCTTTGGATTTGGAGAATGCCAATGGAGGAGTTATTGGGAATCAATGAAATCAGAAGTAGCTGATATGGTCAAAACTGGTGGTTGTCCGGGTGGTGCTATTACTGCATCTCTCTTCTTGAAACAGATTCTGTCAGAGTATCCTGATGCAGAAAAGACTAGTGAGCAGCAAATTACTACTTTAGGAGAAACCTACCTAGAACTGGTGAAGAGGTTGGATGAAGCTCTTCATGGTTTTACCGAAGGTCCTCCATTTACCCTTCAGAGGCTTTATGAGGTCTATCCGGAAGAGTTCTTAGCTGTGAACTCAACACTCCAATTCAACAACTTCCTCGACGAATCTACCATCGGAATTGAAACAGCTCCGAGACTGCCTAAATTGCTGAATATGAAGATTGTGACTCTAGGCGAGTGCGAAGCGAGATTGAACCGGGTCAGGATTAGCTCTGCCGGAGTGGGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

335

Amino Acids

35.59

Weight (kDa)

5.7

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17070 AT5G17070
fragaria_vesca	FvH4_7g33790 FvH4_7g33790 FvH4_7g33790 FvH4_7g33790
malus_domestica	MD01G1234200.v1.1 MD07G1306400.v1.1
prunus_persica	Prupe.2G324400_v2.0.a1 Prupe.2G324400_v2.0.a1
pyrus_communis	pycom01g24270 pycom07g27940
rosa_chinensis	RchiOBHm_Chr1g0383921
rosa_laevigata	RLG00000026086
rosa_multiflora	Rmu_co8486869.1_g000001 Rmu_sc0005139.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277150
rosa_rugosa	Rorug01G0443000
rosa_samantha	Rh1AG189200 Rh1AG469000 Rh1BG426700 Rh1CG439500 Rh1DG459500 Rh2AG256200 Rh2AG256300 Rh2AG293800 Rh2BG193800 Rh2CG261600 Rh2DG264600 Rh4DG441900 Rh5AG227200 Rh5AG268100 Rh5BG209000 Rh5BG286400 Rh6CG067100 Rh6DG064000 Rh7BG421000
rosa_wichuraiana	Rw1G002380 Rw1G040340 Rw5G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AccBSI	CCGCTC	1 cut(s)	284
AccIII	TCCGGA	1 cut(s)	826
AciI	CCGC	4 cut(s)	76, 119, 245, 284
AcuI	CTGAAG	1 cut(s)	788
AfiI	CCNNNNNNNGG	6 cut(s)	75, 272, 320, 745, 807, 999
AgsI	TTSAA	4 cut(s)	664, 865, 899, 970
AhlI	ACTAGT	1 cut(s)	701
AluBI	AGCT	8 cut(s)	136, 461, 546, 605, 767, 842, 905, 987
AluI	AGCT	8 cut(s)	136, 461, 546, 605, 767, 842, 905, 987
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	3 cut(s)	292, 516, 904
Alw44I	GTGCAC	1 cut(s)	177
AlwNI	CAGNNNCTG	1 cut(s)	673
Ama87I	CYCGRG	1 cut(s)	289
Aor13HI	TCCGGA	1 cut(s)	826
AoxI	GGCC	3 cut(s)	311, 322, 362
ApaLI	GTGCAC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	129, 709
Asp700I	GAANNNNTTC	1 cut(s)	768
AspA2I	CCTAGG	1 cut(s)	325
AspS9I	GGNCC	3 cut(s)	311, 362, 788
AsuC2I	CCSGG	2 cut(s)	633, 974
AsuHPI	GGTGA	3 cut(s)	115, 341, 760
AvaI	CYCGRG	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	788
AvrII	CCTAGG	1 cut(s)	325
BaeGI	GKGCMC	2 cut(s)	70, 181
BanI	GGYRCC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	141, 721
BccI	CCATC	8 cut(s)	37, 75, 109, 119, 221, 292, 314, 896
BciVI	GTATCC	1 cut(s)	693
BcnI	CCSGG	2 cut(s)	633, 974
BcoDI	GTCTC	3 cut(s)	292, 516, 904
BcuI	ACTAGT	1 cut(s)	701
BfaI	CTAG	6 cut(s)	326, 435, 509, 702, 740, 947
BfuI	GTATCC	1 cut(s)	693
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	3 cut(s)	77, 130, 710
BlnI	CCTAGG	1 cut(s)	325
BlsI	GCNGC	3 cut(s)	78, 131, 711
Bme1390I	CCNGG	2 cut(s)	633, 974
Bme18I	GGWCC	1 cut(s)	788
BmeT110I	CYCGRG	1 cut(s)	289
BmgT120I	GGNCC	3 cut(s)	311, 362, 788
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	2 cut(s)	633, 974
BmsI	GCATC	3 cut(s)	133, 659, 679
Bpu10I	CCTNAGC	1 cut(s)	426
BpuMI	CCSGG	2 cut(s)	633, 974
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	325
BsaWI	WCCGGW	1 cut(s)	826
BsaXI	ACNNNNNCTCC	4 cut(s)	43, 73, 222, 252
Bsc4I	CCNNNNNNNGG	6 cut(s)	75, 272, 320, 745, 807, 999
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	625, 750
BseAI	TCCGGA	1 cut(s)	826
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	5 cut(s)	48, 148, 232, 325, 766
BseLI	CCNNNNNNNGG	6 cut(s)	75, 272, 320, 745, 807, 999
BseNI	ACTGG	2 cut(s)	625, 750
BseRI	GAGGAG	1 cut(s)	586
BseSI	GKGCMC	2 cut(s)	70, 181
BseXI	GCAGC	2 cut(s)	141, 721
BseYI	CCCAGC	1 cut(s)	277
BshFI	GGCC	3 cut(s)	313, 324, 364
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	5 cut(s)	101, 632, 827, 973, 993
BslI	CCNNNNNNNGG	6 cut(s)	75, 272, 320, 745, 807, 999
BsmAI	GTCTC	3 cut(s)	292, 516, 904
BsmI	GAATGC	1 cut(s)	566
BsnI	GGCC	3 cut(s)	313, 324, 364
Bso31I	GGTCTC	1 cut(s)	292
BsoBI	CYCGRG	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	70, 181
Bsp13I	TCCGGA	1 cut(s)	826
Bsp143I	GATC	2 cut(s)	166, 505
BspACI	CCGC	4 cut(s)	76, 119, 245, 284
BspANI	GGCC	3 cut(s)	313, 324, 364
BspEI	TCCGGA	1 cut(s)	826
BspHI	TCATGA	1 cut(s)	1004
BspLI	GGNNCC	1 cut(s)	67
BspQI	GCTCTTC	1 cut(s)	774
BspT107I	GGYRCC	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	625, 750
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	2 cut(s)	166, 505
BssT1I	CCWWGG	1 cut(s)	325
Bst6I	CTCTTC	4 cut(s)	662, 746, 774, 825
BstC8I	GCNNGC	4 cut(s)	134, 160, 177, 383
BstDEI	CTNAG	2 cut(s)	426, 838
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	5 cut(s)	48, 148, 232, 325, 766
BstKTI	GATC	2 cut(s)	169, 508
BstMAI	GTCTC	3 cut(s)	292, 516, 904
BstMBI	GATC	2 cut(s)	166, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 647, 922
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	2 cut(s)	631, 972
BstSLI	GKGCMC	2 cut(s)	70, 181
BstV1I	GCAGC	2 cut(s)	141, 721
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuI	GTATCC	1 cut(s)	693
BsuRI	GGCC	3 cut(s)	313, 324, 364
BtgZI	GCGATG	2 cut(s)	94, 128
BtsCI	GGATG	5 cut(s)	48, 148, 232, 325, 766
BtsIMutI	CAGTG	1 cut(s)	493
Cac8I	GCNNGC	4 cut(s)	134, 160, 177, 383
CaiI	CAGNNNCTG	1 cut(s)	673
CciI	TCATGA	1 cut(s)	1004
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	3 cut(s)	311, 362, 788
CspCI	CAANNNNNGTGG	2 cut(s)	604, 639
CviAII	CATG	4 cut(s)	382, 386, 773, 1005
DdeI	CTNAG	2 cut(s)	426, 838
DpnI	GATC	2 cut(s)	168, 507
DpnII	GATC	2 cut(s)	166, 505
DraI	TTTAAA	1 cut(s)	306
Eam1104I	CTCTTC	4 cut(s)	662, 746, 774, 825
EarI	CTCTTC	4 cut(s)	662, 746, 774, 825
Eco130I	CCWWGG	1 cut(s)	325
Eco31I	GGTCTC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	788
Eco57I	CTGAAG	1 cut(s)	788
Eco88I	CYCGRG	1 cut(s)	289
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	788
EcoT14I	CCWWGG	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	4 cut(s)	385, 389, 776, 1008
FaiI	YATR	7 cut(s)	383, 387, 611, 774, 816, 932, 1006
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	4 cut(s)	381, 385, 772, 1004
FauI	CCCGC	1 cut(s)	238
Fnu4HI	GCNGC	3 cut(s)	77, 130, 710
FokI	GGATG	5 cut(s)	55, 155, 239, 332, 773
Fsp4HI	GCNGC	3 cut(s)	77, 130, 710
FspBI	CTAG	6 cut(s)	326, 435, 509, 702, 740, 947
GluI	GCNGC	3 cut(s)	77, 130, 710
GsaI	CCCAGC	1 cut(s)	281
HaeIII	GGCC	3 cut(s)	313, 324, 364
HapII	CCGG	5 cut(s)	101, 632, 827, 973, 993
Hin1II	CATG	4 cut(s)	385, 389, 776, 1008
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	8 cut(s)	14, 200, 412, 524, 584, 670, 881, 943
HpaII	CCGG	5 cut(s)	101, 632, 827, 973, 993
HphI	GGTGA	3 cut(s)	115, 341, 760
Hpy166II	GTNNAC	4 cut(s)	28, 179, 448, 847
Hpy188I	TCNGA	5 cut(s)	598, 679, 807, 893, 909
Hpy188III	TCNNGA	6 cut(s)	289, 661, 686, 827, 979, 1005
Hpy8I	GTNNAC	4 cut(s)	28, 179, 448, 847
Hpy99I	CGWCG	1 cut(s)	881
HpyAV	CCTTC	6 cut(s)	16, 266, 394, 526, 779, 812
HpyCH4V	TGCA	5 cut(s)	158, 179, 385, 650, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 647, 922
HpyF3I	CTNAG	2 cut(s)	426, 838
Hsp92II	CATG	4 cut(s)	385, 389, 776, 1008
Kpn2I	TCCGGA	1 cut(s)	826
Kzo9I	GATC	2 cut(s)	166, 505
LguI	GCTCTTC	1 cut(s)	774
LmnI	GCTCC	3 cut(s)	230, 281, 910
Lsp1109I	GCAGC	2 cut(s)	141, 721
LweI	GCATC	3 cut(s)	133, 659, 679
MaeI	CTAG	6 cut(s)	326, 435, 509, 702, 740, 947
MaeIII	GTNAC	3 cut(s)	256, 352, 940
MalI	GATC	2 cut(s)	168, 507
MbiI	CCGCTC	1 cut(s)	284
MboI	GATC	2 cut(s)	166, 505
MboII	GAAGA	7 cut(s)	220, 541, 649, 761, 763, 842, 946
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	2 cut(s)	70, 181
MluCI	AATT	8 cut(s)	189, 216, 249, 539, 714, 860, 894, 920
MlyI	GAGTC	4 cut(s)	8, 406, 518, 937
MmeI	TCCRAC	1 cut(s)	738
Mph1103I	ATGCAT	1 cut(s)	387
MroI	TCCGGA	1 cut(s)	826
MroXI	GAANNNNTTC	1 cut(s)	768
MseI	TTAA	2 cut(s)	305, 369
MspI	CCGG	5 cut(s)	101, 632, 827, 973, 993
MspR9I	CCNGG	2 cut(s)	633, 974
Mva1269I	GAATGC	1 cut(s)	566
MwoI	GCNNNNNNNGC	3 cut(s)	251, 647, 922
NciI	CCSGG	2 cut(s)	633, 974
NdeII	GATC	2 cut(s)	166, 505
NlaIII	CATG	4 cut(s)	385, 389, 776, 1008
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	940
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	1 cut(s)	385
PaeI	GCATGC	1 cut(s)	385
PaeR7I	CTCGAG	1 cut(s)	289
PagI	TCATGA	1 cut(s)	1004
PciSI	GCTCTTC	1 cut(s)	774
PctI	GAATGC	1 cut(s)	566
PdmI	GAANNNNTTC	1 cut(s)	768
PfeI	GAWTC	4 cut(s)	200, 584, 670, 881
PkrI	GCNGC	3 cut(s)	78, 131, 711
PleI	GAGTC	4 cut(s)	8, 406, 518, 937
PpsI	GAGTC	4 cut(s)	8, 406, 518, 937
PpuMI	RGGWCCY	1 cut(s)	788
Psp5II	RGGWCCY	1 cut(s)	788
PspFI	CCCAGC	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	3 cut(s)	311, 362, 788
PspPPI	RGGWCCY	1 cut(s)	788
PstNI	CAGNNNCTG	1 cut(s)	673
PsuI	RGATCY	1 cut(s)	505
SapI	GCTCTTC	1 cut(s)	774
SaqAI	TTAA	2 cut(s)	305, 369
SatI	GCNGC	3 cut(s)	77, 130, 710
Sau3AI	GATC	2 cut(s)	166, 505
Sau96I	GGNCC	3 cut(s)	311, 362, 788
SchI	GAGTC	4 cut(s)	8, 406, 518, 937
ScrFI	CCNGG	2 cut(s)	633, 974
SduI	GDGCHC	2 cut(s)	70, 181
SfaNI	GCATC	3 cut(s)	133, 659, 679
Sfr274I	CTCGAG	1 cut(s)	289
SgrAI	CRCCGGYG	1 cut(s)	100
SinI	GGWCC	1 cut(s)	788
SlaI	CTCGAG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
SpeI	ACTAGT	1 cut(s)	701
SphI	GCATGC	1 cut(s)	385
Sse9I	AATT	8 cut(s)	189, 216, 249, 539, 714, 860, 894, 920
SsiI	CCGC	4 cut(s)	76, 119, 245, 284
SspMI	CTAG	6 cut(s)	326, 435, 509, 702, 740, 947
StyD4I	CCNGG	2 cut(s)	631, 972
StyI	CCWWGG	1 cut(s)	325
TaqI	TCGA	5 cut(s)	17, 222, 290, 527, 876
TasI	AATT	8 cut(s)	189, 216, 249, 539, 714, 860, 894, 920
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	4 cut(s)	200, 584, 670, 881
Tru1I	TTAA	2 cut(s)	305, 369
Tru9I	TTAA	2 cut(s)	305, 369
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	940
TseI	GCWGC	2 cut(s)	129, 709
Tsp45I	GTSAC	1 cut(s)	940
TspDTI	ATGAA	6 cut(s)	35, 413, 605, 761, 777, 947
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	493
VneI	GTGCAC	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	788
XagI	CCTNNNNNAGG	1 cut(s)	270
XceI	RCATGY	1 cut(s)	385
XhoI	CTCGAG	1 cut(s)	289
XmaJI	CCTAGG	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	768
XspI	CTAG	6 cut(s)	326, 435, 509, 702, 740, 947
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.