Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002676

Physical Location & Seq

Genomic Coordinates Reverse (-)

17582942 .. 17621868

Gene Structure 38927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG193800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGGTTTCAAATGCTCCGCCAAAGTCTTCAACTTATAATAATTGAAGTAGCATTGATTGGAAACGAAGATGGCACCACTCGCTTTTTCATCAACTCTAACGGCGCAGGAGCCCACTTTGTTCATGCAGCTCATGATGGTGTCAGAGTGGCTGATATCCTTGACCCTATTTACATTCCTGATGAGATTGTCGAAAACCTCTTTGCTATGAATTCAGTTCTAAGCTATGAAGGCATTTTGAAACCATTGCTTTCAGTGCAAGTCACTGAGCTTGCTGATGCCATCTTTATCGGTTGCAGCATAAACCATGTGGTTGTGGATGGAAGATTTGGAGAATGCCAATGGAGGAGTTATTGGGAATCAATGAAATCAGAAGTAGCTGATATGGTCAAAACTGGTGGTTGTCCGGGTGGTGCTATTACTGCAGCTCTCTTCTTGAAACAGGCTATTGAATCAAAAAGCCAAGAATTGGAGCTGGATCTTTCAAGTTTGGGTGCTGTAAATACCATGTTTGCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

173

Amino Acids

18.8

Weight (kDa)

4.59

Isoelectric Point (pI)

28.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	26 - 108	4.7e-14	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17070 AT5G17070
fragaria_vesca	FvH4_7g33790 FvH4_7g33790 FvH4_7g33790 FvH4_7g33790
malus_domestica	MD01G1234200.v1.1 MD07G1306400.v1.1
prunus_persica	Prupe.2G324400_v2.0.a1 Prupe.2G324400_v2.0.a1
pyrus_communis	pycom01g24270 pycom07g27940
rosa_chinensis	RchiOBHm_Chr1g0383921
rosa_laevigata	RLG00000026086
rosa_multiflora	Rmu_co8486869.1_g000001 Rmu_sc0005139.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277150
rosa_rugosa	Rorug01G0443000
rosa_samantha	Rh1AG189200 Rh1AG469000 Rh1BG426700 Rh1CG439500 Rh1DG459500 Rh2AG256200 Rh2AG256300 Rh2AG293800 Rh2BG193800 Rh2CG261600 Rh2DG264600 Rh4DG441900 Rh5AG227200 Rh5AG268100 Rh5BG209000 Rh5BG286400 Rh6CG067100 Rh6DG064000 Rh7BG421000
rosa_wichuraiana	Rw1G002380 Rw1G040340 Rw5G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	74
AccB7I	CCANNNNNTGG	1 cut(s)	469
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	1 cut(s)	486
AcsI	RAATTY	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	469
AgsI	TTSAA	7 cut(s)	11, 32, 47, 241, 439, 452, 486
AluBI	AGCT	6 cut(s)	131, 225, 271, 380, 428, 475
AluI	AGCT	6 cut(s)	131, 225, 271, 380, 428, 475
AlwI	GGATC	1 cut(s)	486
ApeKI	GCWGC	3 cut(s)	128, 297, 425
ApoI	RAATTY	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	3 cut(s)	140, 309, 437
BccI	CCATC	4 cut(s)	65, 131, 290, 314
BceAI	ACGGC	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	423
BisI	GCNGC	3 cut(s)	129, 298, 426
BlsI	GCNGC	3 cut(s)	130, 299, 427
Bme1390I	CCNGG	1 cut(s)	408
BmiI	GGNNCC	2 cut(s)	76, 112
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse1I	ACTGG	1 cut(s)	400
Bse3DI	GCAATG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	1 cut(s)	361
BseXI	GCAGC	3 cut(s)	140, 309, 437
BshNI	GGYRCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmI	GAATGC	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	478
BspACI	CCGC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	259
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	76, 112
BspMAI	CTGCAG	1 cut(s)	427
BspPI	GGATC	1 cut(s)	486
BspT107I	GGYRCC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	400
BssMI	GATC	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	221, 267
BstF5I	GGATG	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	1 cut(s)	481
BstMBI	GATC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 231, 256, 422
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	3 cut(s)	140, 309, 437
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	2 cut(s)	261, 264
Cac8I	GCNNGC	1 cut(s)	273
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	1 cut(s)	107
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviAII	CATG	4 cut(s)	125, 134, 308, 508
DdeI	CTNAG	2 cut(s)	221, 267
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
EciI	GGCGGA	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	115
Eco32I	GATATC	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	211
EcoRV	GATATC	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	115
FaeI	CATG	4 cut(s)	128, 137, 311, 511
FaiI	YATR	9 cut(s)	38, 126, 135, 209, 228, 302, 309, 386, 509
FatI	CATG	4 cut(s)	124, 133, 307, 507
Fnu4HI	GCNGC	3 cut(s)	129, 298, 426
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	3 cut(s)	129, 298, 426
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	3 cut(s)	129, 298, 426
HapII	CCGG	1 cut(s)	407
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	4 cut(s)	128, 137, 311, 511
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HinfI	GANTC	2 cut(s)	359, 452
HpaII	CCGG	1 cut(s)	407
Hpy188I	TCNGA	2 cut(s)	146, 373
Hpy188III	TCNNGA	3 cut(s)	134, 179, 436
HpyAV	CCTTC	1 cut(s)	224
HpyCH4V	TGCA	4 cut(s)	128, 259, 297, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 231, 256, 422
HpyF3I	CTNAG	2 cut(s)	221, 267
Hsp92II	CATG	4 cut(s)	128, 137, 311, 511
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	478
LmnI	GCTCC	3 cut(s)	21, 110, 472
LpnPI	CCDG	6 cut(s)	93, 192, 381, 420, 428, 461
Lsp1109I	GCAGC	3 cut(s)	140, 309, 437
LweI	GCATC	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MboII	GAAGA	4 cut(s)	20, 80, 336, 424
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	4 cut(s)	42, 211, 467, 517
MnlI	CCTC	2 cut(s)	209, 339
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	341
MwoI	GCNNNNNNNGC	4 cut(s)	81, 231, 256, 422
NciI	CCSGG	1 cut(s)	408
NdeII	GATC	1 cut(s)	478
NlaIII	CATG	4 cut(s)	128, 137, 311, 511
NlaIV	GGNNCC	2 cut(s)	76, 112
NmuCI	GTSAC	1 cut(s)	262
PagI	TCATGA	1 cut(s)	133
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	2 cut(s)	359, 452
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	3 cut(s)	130, 299, 427
PsiI	TTATAA	1 cut(s)	38
PspN4I	GGNNCC	2 cut(s)	76, 112
PstI	CTGCAG	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	478
RseI	CAYNNNNRTG	1 cut(s)	138
SatI	GCNGC	3 cut(s)	129, 298, 426
Sau3AI	GATC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	7 cut(s)	133, 201, 227, 273, 382, 430, 477
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	4 cut(s)	42, 211, 467, 517
SsiI	CCGC	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	406
TaqI	TCGA	1 cut(s)	192
TasI	AATT	4 cut(s)	42, 211, 467, 517
TfiI	GAWTC	2 cut(s)	359, 452
TscAI	CASTG	2 cut(s)	261, 271
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	3 cut(s)	128, 297, 425
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	5 cut(s)	79, 113, 224, 243, 380
TspRI	CASTG	2 cut(s)	261, 271
Van91I	CCANNNNNTGG	1 cut(s)	469
XapI	RAATTY	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.