Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002676

Physical Location & Seq

Genomic Coordinates Reverse (-)

28077153 .. 28083326

Gene Structure 6174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG261600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGGTCAACGGCGATAGAACTTGTGAGAATTCTCCCTAGTGCAGAAGATGAGGTCAACGTAGCTTGTTTTCATCCTTCTATTGGAGGTGGCCTTGTTTATGGAACTACGTTGCTTGATGACTTACTAGGAAGATTTGGAGAATGCCAATGGAGGAGTTATTGGGAATCAATGAAATCAGAAGTAGCTGATATGGTCAAAACTGGTGGTTGTCCGGGTGGTGCTATTACTGCATCTCTCTTCTTGAAACAGATTCTGTCACAGTATCCTGATGCAGAAAAGACTAGTGAGCAGCAAATTACTACTTTAGGAGAAACCTACCTAGAACTGGTGCAGAGGTTGGATGAAGTATGTGTCTTCATTGCAGCTCTTCATGGTTTTACCGAAGGTCCTCCATTTACCCTTCAGAGGCTTTATGAGGTCAATCCGGAACAGTTCTTAGCTGTGATCTCAGCGCTCCAATTCAACAACCTCCTCAACGAATCTACCATCGGAATTGAAACAGCTCCGAGACTGCCTAAATTGCCGAATCTGAAGATTGTGACTCTAGGCGAGTGCGAAGCGAGATTGAACCGGGTCAGGATTAGCTCTGCCGGAGTGGGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

202

Amino Acids

22.02

Weight (kDa)

4.75

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17070 AT5G17070
fragaria_vesca	FvH4_7g33790 FvH4_7g33790 FvH4_7g33790 FvH4_7g33790
malus_domestica	MD01G1234200.v1.1 MD07G1306400.v1.1
prunus_persica	Prupe.2G324400_v2.0.a1 Prupe.2G324400_v2.0.a1
pyrus_communis	pycom01g24270 pycom07g27940
rosa_chinensis	RchiOBHm_Chr1g0383921
rosa_laevigata	RLG00000026086
rosa_multiflora	Rmu_co8486869.1_g000001 Rmu_sc0005139.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277150
rosa_rugosa	Rorug01G0443000
rosa_samantha	Rh1AG189200 Rh1AG469000 Rh1BG426700 Rh1CG439500 Rh1DG459500 Rh2AG256200 Rh2AG256300 Rh2AG293800 Rh2BG193800 Rh2CG261600 Rh2DG264600 Rh4DG441900 Rh5AG227200 Rh5AG268100 Rh5BG209000 Rh5BG286400 Rh6CG067100 Rh6DG064000 Rh7BG421000
rosa_wichuraiana	Rw1G002380 Rw1G040340 Rw5G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	427
AcsI	RAATTY	1 cut(s)	30
AcuI	CTGAAG	2 cut(s)	389, 554
AfeI	AGCGCT	1 cut(s)	456
AfiI	CCNNNNNNNGG	4 cut(s)	83, 328, 408, 600
AgsI	TTSAA	4 cut(s)	247, 466, 500, 571
AhlI	ACTAGT	1 cut(s)	284
AluBI	AGCT	6 cut(s)	65, 188, 368, 443, 506, 588
AluI	AGCT	6 cut(s)	65, 188, 368, 443, 506, 588
Alw26I	GTCTC	1 cut(s)	505
AlwNI	CAGNNNCTG	1 cut(s)	256
Aor13HI	TCCGGA	1 cut(s)	427
Aor51HI	AGCGCT	1 cut(s)	456
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	2 cut(s)	292, 365
ApoI	RAATTY	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	1 cut(s)	389
AsuC2I	CCSGG	2 cut(s)	216, 575
AvaII	GGWCC	1 cut(s)	389
BbsI	GAAGAC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	304, 377
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	1 cut(s)	27
BciVI	GTATCC	1 cut(s)	276
BcnI	CCSGG	2 cut(s)	216, 575
BcoDI	GTCTC	1 cut(s)	505
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	5 cut(s)	39, 128, 285, 323, 548
BfoI	RGCGCY	1 cut(s)	458
BfuI	GTATCC	1 cut(s)	276
BisI	GCNGC	2 cut(s)	293, 366
BlsI	GCNGC	2 cut(s)	294, 367
Bme1390I	CCNGG	2 cut(s)	216, 575
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmrFI	CCNGG	2 cut(s)	216, 575
BmsI	GCATC	2 cut(s)	242, 262
BpiI	GAAGAC	1 cut(s)	349
BpuMI	CCSGG	2 cut(s)	216, 575
BsaWI	WCCGGW	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 328, 408, 600
Bse1I	ACTGG	2 cut(s)	208, 333
Bse3DI	GCAATG	1 cut(s)	360
BseAI	TCCGGA	1 cut(s)	427
BseGI	GGATG	2 cut(s)	73, 349
BseLI	CCNNNNNNNGG	4 cut(s)	83, 328, 408, 600
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	2 cut(s)	208, 333
BseRI	GAGGAG	2 cut(s)	169, 464
BseXI	GCAGC	2 cut(s)	304, 377
BsgI	GTGCAG	2 cut(s)	63, 353
BshFI	GGCC	1 cut(s)	93
BsiSI	CCGG	4 cut(s)	215, 428, 574, 594
BslI	CCNNNNNNNGG	4 cut(s)	83, 328, 408, 600
BsmAI	GTCTC	1 cut(s)	505
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	93
Bsp13I	TCCGGA	1 cut(s)	427
Bsp143I	GATC	1 cut(s)	447
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	464
BspEI	TCCGGA	1 cut(s)	427
BspHI	TCATGA	1 cut(s)	605
BspQI	GCTCTTC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	208, 333
BssMI	GATC	1 cut(s)	447
Bst4CI	ACNGT	2 cut(s)	264, 435
Bst6I	CTCTTC	2 cut(s)	245, 375
BstDEI	CTNAG	2 cut(s)	439, 451
BstF5I	GGATG	2 cut(s)	73, 349
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	1 cut(s)	450
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	1 cut(s)	447
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 523
BstSCI	CCNGG	2 cut(s)	214, 573
BstV1I	GCAGC	2 cut(s)	304, 377
BstV2I	GAAGAC	1 cut(s)	349
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	73, 349
CaiI	CAGNNNCTG	1 cut(s)	256
CciI	TCATGA	1 cut(s)	605
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	1 cut(s)	389
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	2 cut(s)	374, 606
CviJI	RGCY	8 cut(s)	65, 93, 188, 368, 412, 443, 506, 588
CviKI_1	RGCY	8 cut(s)	65, 93, 188, 368, 412, 443, 506, 588
DdeI	CTNAG	2 cut(s)	439, 451
DpnI	GATC	1 cut(s)	449
DpnII	GATC	1 cut(s)	447
Eam1104I	CTCTTC	2 cut(s)	245, 375
EarI	CTCTTC	2 cut(s)	245, 375
Eco47I	GGWCC	1 cut(s)	389
Eco47III	AGCGCT	1 cut(s)	456
Eco57I	CTGAAG	2 cut(s)	389, 554
EcoO109I	RGGNCCY	1 cut(s)	389
EcoRI	GAATTC	1 cut(s)	30
FaeI	CATG	2 cut(s)	377, 609
FaiI	YATR	6 cut(s)	102, 194, 352, 375, 417, 607
FatI	CATG	2 cut(s)	373, 605
Fnu4HI	GCNGC	2 cut(s)	293, 366
FokI	GGATG	2 cut(s)	60, 356
Fsp4HI	GCNGC	2 cut(s)	293, 366
FspBI	CTAG	5 cut(s)	39, 128, 285, 323, 548
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	2 cut(s)	293, 366
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	4 cut(s)	215, 428, 574, 594
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	2 cut(s)	377, 609
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	2 cut(s)	9, 58
HindII	GTYRAC	2 cut(s)	9, 58
HinfI	GANTC	5 cut(s)	167, 253, 482, 529, 544
HpaII	CCGG	4 cut(s)	215, 428, 574, 594
Hpy166II	GTNNAC	2 cut(s)	9, 58
Hpy188I	TCNGA	5 cut(s)	181, 408, 494, 510, 534
Hpy188III	TCNNGA	5 cut(s)	244, 269, 428, 580, 606
Hpy8I	GTNNAC	2 cut(s)	9, 58
HpyAV	CCTTC	3 cut(s)	87, 380, 413
HpyCH4III	ACNGT	2 cut(s)	264, 435
HpyCH4IV	ACGT	2 cut(s)	60, 110
HpyCH4V	TGCA	5 cut(s)	44, 233, 275, 334, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 523
HpyF3I	CTNAG	2 cut(s)	439, 451
HpySE526I	ACGT	2 cut(s)	60, 110
Hsp92II	CATG	2 cut(s)	377, 609
HspAI	GCGC	1 cut(s)	455
Kpn2I	TCCGGA	1 cut(s)	427
Kzo9I	GATC	1 cut(s)	447
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	2 cut(s)	462, 511
LpnPI	CCDG	7 cut(s)	189, 228, 282, 314, 441, 565, 587
Lsp1109I	GCAGC	2 cut(s)	304, 377
LweI	GCATC	2 cut(s)	242, 262
MaeI	CTAG	5 cut(s)	39, 128, 285, 323, 548
MaeII	ACGT	2 cut(s)	60, 110
MaeIII	GTNAC	2 cut(s)	258, 541
MalI	GATC	1 cut(s)	449
MboI	GATC	1 cut(s)	447
MboII	GAAGA	6 cut(s)	59, 144, 232, 349, 362, 547
MluCI	AATT	5 cut(s)	30, 297, 461, 495, 521
MlyI	GAGTC	1 cut(s)	538
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	9 cut(s)	46, 80, 147, 330, 402, 402, 412, 482, 485
MroI	TCCGGA	1 cut(s)	427
MspI	CCGG	4 cut(s)	215, 428, 574, 594
MspR9I	CCNGG	2 cut(s)	216, 575
Mva1269I	GAATGC	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	230, 523
NciI	CCSGG	2 cut(s)	216, 575
NdeII	GATC	1 cut(s)	447
NlaIII	CATG	2 cut(s)	377, 609
NmuCI	GTSAC	2 cut(s)	258, 541
PagI	TCATGA	1 cut(s)	605
PciSI	GCTCTTC	1 cut(s)	375
PctI	GAATGC	1 cut(s)	149
PfeI	GAWTC	4 cut(s)	167, 253, 482, 529
PkrI	GCNGC	2 cut(s)	294, 367
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
PpuMI	RGGWCCY	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	389
PspPI	GGNCC	1 cut(s)	389
PspPPI	RGGWCCY	1 cut(s)	389
PstNI	CAGNNNCTG	1 cut(s)	256
SapI	GCTCTTC	1 cut(s)	375
SatI	GCNGC	2 cut(s)	293, 366
Sau3AI	GATC	1 cut(s)	447
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	2 cut(s)	216, 575
SfaNI	GCATC	2 cut(s)	242, 262
SinI	GGWCC	1 cut(s)	389
SpeI	ACTAGT	1 cut(s)	284
Sse9I	AATT	5 cut(s)	30, 297, 461, 495, 521
SspMI	CTAG	5 cut(s)	39, 128, 285, 323, 548
StyD4I	CCNGG	2 cut(s)	214, 573
TaaI	ACNGT	2 cut(s)	264, 435
TaiI	ACGT	2 cut(s)	63, 113
TasI	AATT	5 cut(s)	30, 297, 461, 495, 521
TfiI	GAWTC	4 cut(s)	167, 253, 482, 529
TseFI	GTSAC	2 cut(s)	258, 541
TseI	GCWGC	2 cut(s)	292, 365
Tsp45I	GTSAC	2 cut(s)	258, 541
TspDTI	ATGAA	5 cut(s)	62, 188, 349, 360, 362
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	1 cut(s)	30
XspI	CTAG	5 cut(s)	39, 128, 285, 323, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.