Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002676

Physical Location & Seq

Genomic Coordinates Forward (+)

27467240 .. 27469840

Gene Structure 2601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAGATGCCATCAAATGAAAATTCACAGCCCTCAATGAATTCTACCAGCAATGCTGATCATCAACAGGAGGCCGTGCTTCCCGATGGCGTAGATAATCTATGTAATGAGTCGAAGCTGGAGTTTTCTGAAGCAGAAGTTAGAGAAGTGCTAGAAGTTATTGCATCCACTGGGAAATTTTGGCATGATTGGGACAAATTAAAGAGCATGCTATGGTTTCAGTTGACGCAGGTTCTGTTGGAGTATCCTGAGGAAAAAATGGCAAGTGAGCAGCAAATTACTTCTTTAGGAGAAACCTATCCTGAGCTGGTGAAGAGGTTGGATGAAGCTCTTCATAGTTTTACCGAAGGTCCTCCGTTTACCCTTCAGAGGCTTTGCGAGATCCTATTGGATGCAAAAAGAATCTATCCAAATCTCTCGAAGCTTGCTCTTGCATTAGAAAAGAATCTATTGGTGACATCTATGCTGACAGTCTCAACGGATCCGTATCCACAAGCCACAGTGCAAAATTCAGTTGAACCAGACAAAGCAATTGACGAACCTAAAATTCACTCTGATTCAGTGCAAAATGGGGTGGAACCTGTGGTAGGCGGCGATAGGGATGAAGTTATGGCAGAGGTAGAGCAAGCTGATATCGATGATGACATGACCATTGCCATGGAAGCTTTTGAAGATATAGTTGGATCATCAGACGCAAATTCAGTGCAGACCAATAATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

241

Amino Acids

26.76

Weight (kDa)

4.17

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17070 AT5G17070
fragaria_vesca	FvH4_7g33790 FvH4_7g33790 FvH4_7g33790 FvH4_7g33790
malus_domestica	MD01G1234200.v1.1 MD07G1306400.v1.1
prunus_persica	Prupe.2G324400_v2.0.a1 Prupe.2G324400_v2.0.a1
pyrus_communis	pycom01g24270 pycom07g27940
rosa_chinensis	RchiOBHm_Chr1g0383921
rosa_laevigata	RLG00000026086
rosa_multiflora	Rmu_co8486869.1_g000001 Rmu_sc0005139.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277150
rosa_rugosa	Rorug01G0443000
rosa_samantha	Rh1AG189200 Rh1AG469000 Rh1BG426700 Rh1CG439500 Rh1DG459500 Rh2AG256200 Rh2AG256300 Rh2AG293800 Rh2BG193800 Rh2CG261600 Rh2DG264600 Rh4DG441900 Rh5AG227200 Rh5AG268100 Rh5BG209000 Rh5BG286400 Rh6CG067100 Rh6DG064000 Rh7BG421000
rosa_wichuraiana	Rw1G002380 Rw1G040340 Rw5G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
AciI	CCGC	1 cut(s)	591
AclWI	GGATC	4 cut(s)	376, 476, 489, 691
AcsI	RAATTY	6 cut(s)	22, 40, 176, 508, 546, 697
AcuI	CTGAAG	2 cut(s)	150, 350
AfiI	CCNNNNNNNGG	2 cut(s)	369, 587
AgsI	TTSAA	2 cut(s)	518, 671
AjuI	GAANNNNNNNTTGG	2 cut(s)	663, 695
AluBI	AGCT	6 cut(s)	118, 307, 329, 424, 629, 665
AluI	AGCT	6 cut(s)	118, 307, 329, 424, 629, 665
Alw26I	GTCTC	1 cut(s)	478
AlwI	GGATC	4 cut(s)	376, 476, 489, 691
AlwNI	CAGNNNCTG	1 cut(s)	235
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	6 cut(s)	22, 40, 176, 508, 546, 697
Asp700I	GAANNNNTTC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	322, 466
AvaII	GGWCC	1 cut(s)	350
AxyI	CCTNAGG	1 cut(s)	249
BamHI	GGATCC	1 cut(s)	481
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	2 cut(s)	19, 80
BceAI	ACGGC	1 cut(s)	59
BciVI	GTATCC	2 cut(s)	255, 498
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	478
BfaI	CTAG	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	220
BfuI	GTATCC	2 cut(s)	255, 498
BisI	GCNGC	2 cut(s)	272, 592
BlsI	GCNGC	2 cut(s)	273, 593
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	483, 579
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	173, 382
BmuI	ACTGGG	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	636
BsaBI	GATNNNNATC	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	657
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 587
Bse1I	ACTGG	1 cut(s)	175
Bse21I	CCTNAGG	1 cut(s)	249
Bse3DI	GCAATG	2 cut(s)	58, 651
Bse8I	GATNNNNATC	1 cut(s)	486
BseCI	ATCGAT	1 cut(s)	636
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	4 cut(s)	164, 328, 397, 607
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	2 cut(s)	369, 587
BseMI	GCAATG	2 cut(s)	58, 651
BseMII	CTCAG	2 cut(s)	240, 294
BseNI	ACTGG	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	283
BshFI	GGCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	636
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	369, 587
BsmAI	GTCTC	1 cut(s)	478
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	4 cut(s)	58, 381, 481, 683
Bsp19I	CCATGG	1 cut(s)	657
BspACI	CCGC	1 cut(s)	591
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	2 cut(s)	241, 295
BspDI	ATCGAT	1 cut(s)	636
BspLI	GGNNCC	2 cut(s)	483, 579
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	4 cut(s)	376, 476, 489, 691
BspQI	GCTCTTC	1 cut(s)	336
BsrDI	GCAATG	2 cut(s)	58, 651
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	4 cut(s)	58, 381, 481, 683
BssT1I	CCWWGG	1 cut(s)	657
Bst4CI	ACNGT	2 cut(s)	472, 502
Bst6I	CTCTTC	2 cut(s)	308, 336
BstC8I	GCNNGC	3 cut(s)	209, 426, 627
BstDEI	CTNAG	3 cut(s)	249, 303, 720
BstDSI	CCRYGG	1 cut(s)	657
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstF5I	GGATG	4 cut(s)	164, 328, 397, 607
BstKTI	GATC	4 cut(s)	61, 384, 484, 686
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	4 cut(s)	58, 381, 481, 683
BstMWI	GCNNNNNNNGC	1 cut(s)	662
BstNSI	RCATGY	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	2 cut(s)	381, 481
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstYI	RGATCY	2 cut(s)	381, 481
Bsu15I	ATCGAT	1 cut(s)	636
Bsu36I	CCTNAGG	1 cut(s)	249
BsuI	GTATCC	2 cut(s)	255, 498
BsuRI	GGCC	1 cut(s)	74
BsuTUI	ATCGAT	1 cut(s)	636
BtgI	CCRYGG	1 cut(s)	657
BtsCI	GGATG	4 cut(s)	164, 328, 397, 607
BtsIMutI	CAGTG	4 cut(s)	168, 507, 567, 708
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	3 cut(s)	209, 426, 627
CaiI	CAGNNNCTG	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	350
ClaI	ATCGAT	1 cut(s)	636
CseI	GACGC	2 cut(s)	235, 701
CviAII	CATG	4 cut(s)	185, 208, 646, 658
DdeI	CTNAG	3 cut(s)	249, 303, 720
DpnI	GATC	4 cut(s)	60, 383, 483, 685
DpnII	GATC	4 cut(s)	58, 381, 481, 683
Eam1104I	CTCTTC	2 cut(s)	308, 336
EarI	CTCTTC	2 cut(s)	308, 336
Eco130I	CCWWGG	1 cut(s)	657
Eco32I	GATATC	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	2 cut(s)	150, 350
Eco81I	CCTNAGG	1 cut(s)	249
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	40
EcoRV	GATATC	1 cut(s)	634
EcoT14I	CCWWGG	1 cut(s)	657
ErhI	CCWWGG	1 cut(s)	657
FaeI	CATG	4 cut(s)	188, 211, 649, 661
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	4 cut(s)	184, 207, 645, 657
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	272, 592
FokI	GGATG	4 cut(s)	151, 335, 404, 614
Fsp4HI	GCNGC	2 cut(s)	272, 592
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	2 cut(s)	272, 592
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	74
HgaI	GACGC	2 cut(s)	235, 701
Hin1II	CATG	4 cut(s)	188, 211, 649, 661
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HindIII	AAGCTT	2 cut(s)	422, 663
HinfI	GANTC	4 cut(s)	110, 402, 445, 557
HphI	GGTGA	2 cut(s)	322, 466
Hpy166II	GTNNAC	2 cut(s)	225, 360
Hpy188I	TCNGA	4 cut(s)	130, 369, 556, 691
Hpy188III	TCNNGA	4 cut(s)	83, 248, 302, 418
Hpy8I	GTNNAC	2 cut(s)	225, 360
HpyAV	CCTTC	2 cut(s)	341, 374
HpyCH4III	ACNGT	2 cut(s)	472, 502
HpyCH4V	TGCA	6 cut(s)	164, 395, 434, 505, 565, 706
HpyF10VI	GCNNNNNNNGC	1 cut(s)	662
HpyF3I	CTNAG	3 cut(s)	249, 303, 720
Hsp92II	CATG	4 cut(s)	188, 211, 649, 661
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	4 cut(s)	58, 381, 481, 683
LguI	GCTCTTC	1 cut(s)	336
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	2 cut(s)	173, 382
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	4 cut(s)	60, 383, 483, 685
MboI	GATC	4 cut(s)	58, 381, 481, 683
MboII	GAAGA	3 cut(s)	323, 325, 683
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	2 cut(s)	381, 481
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	3 cut(s)	219, 300, 661
MnlI	CCTC	7 cut(s)	43, 64, 244, 309, 363, 363, 610
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	1 cut(s)	200
MslI	CAYNNNNRTG	1 cut(s)	656
MunI	CAATTG	1 cut(s)	531
MwoI	GCNNNNNNNGC	1 cut(s)	662
NcoI	CCATGG	1 cut(s)	657
NdeII	GATC	4 cut(s)	58, 381, 481, 683
NlaIII	CATG	4 cut(s)	188, 211, 649, 661
NlaIV	GGNNCC	2 cut(s)	483, 579
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	1 cut(s)	211
PaeI	GCATGC	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	3 cut(s)	402, 445, 557
PkrI	GCNGC	2 cut(s)	273, 593
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	483, 579
PspPI	GGNCC	1 cut(s)	350
PspPPI	RGGWCCY	1 cut(s)	350
PstNI	CAGNNNCTG	1 cut(s)	235
PsuI	RGATCY	2 cut(s)	381, 481
RseI	CAYNNNNRTG	1 cut(s)	656
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	2 cut(s)	272, 592
Sau3AI	GATC	4 cut(s)	58, 381, 481, 683
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	119
SfaNI	GCATC	2 cut(s)	173, 382
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	656
SphI	GCATGC	1 cut(s)	211
SsiI	CCGC	1 cut(s)	591
SspMI	CTAG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	2 cut(s)	472, 502
TaqI	TCGA	3 cut(s)	113, 419, 636
TauI	GCSGC	1 cut(s)	594
TfiI	GAWTC	3 cut(s)	402, 445, 557
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	4 cut(s)	175, 507, 567, 708
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	5 cut(s)	33, 53, 323, 339, 618
TspGWI	ACGGA	3 cut(s)	345, 474, 494
TspRI	CASTG	4 cut(s)	175, 507, 567, 708
VpaK11BI	GGWCC	1 cut(s)	350
XagI	CCTNNNNNAGG	1 cut(s)	585
XapI	RAATTY	6 cut(s)	22, 40, 176, 508, 546, 697
XceI	RCATGY	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.