Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002676

Physical Location & Seq

Genomic Coordinates Reverse (-)

29198290 .. 29209528

Gene Structure 11239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG256200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAGGGGCTAAGAGATGCTCTTGATTTTGGACAGCTGGATGATGTTCGTTTTGTTGGACCCAGGTTTACTTGGCAAGGAATCGGTGCAGGGCAGTTGATCAAAATTAGGCTGGATTGTTATGTGGCTACATGGCAATGGAAGGACCTTTTTTCGGCATCTAAGGTGAAGGAATGCAATGGGGTCAACGGCGATGGAACTTGTGCGGAAGATGAGGTCAACATAGCTTGTTTTCATCCTTCTATTGGAGGTGGCCTTGTTTATGGAACTACGTTGCTTGATGACTTACTAGGAAGATTTGGAGAATGCCAATGGAGGAGTTATTGGGAATCAATGAAATCAGAAGTAGCTGATATGGTCAAAACTGGTGGTTGTCCGGGTGGTGCTATTACTGCATCTCTCTTCTTGAAACAGATTCTGTCAGAGTATCCTGATGCAGAAAAGACTAGTGAGCAGCAAATTACTACTTTAGGAGAAACCTACCTAGAACTGGTGAAGAGGTTGGATGAAGCTCTTCATGGTTTTACCGAAGGTCCTCCATTTACCCTTCAGAGGCTTTATGAGGCTATTGAATCAGAAAGCCAAGAATTGGAGCTGGATCTTTCAAGTTTGGGTGCTGTAAATACCATGTTTGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

213

Amino Acids

23.51

Weight (kDa)

4.41

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17070 AT5G17070
fragaria_vesca	FvH4_7g33790 FvH4_7g33790 FvH4_7g33790 FvH4_7g33790
malus_domestica	MD01G1234200.v1.1 MD07G1306400.v1.1
prunus_persica	Prupe.2G324400_v2.0.a1 Prupe.2G324400_v2.0.a1
pyrus_communis	pycom01g24270 pycom07g27940
rosa_chinensis	RchiOBHm_Chr1g0383921
rosa_laevigata	RLG00000026086
rosa_multiflora	Rmu_co8486869.1_g000001 Rmu_sc0005139.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277150
rosa_rugosa	Rorug01G0443000
rosa_samantha	Rh1AG189200 Rh1AG469000 Rh1BG426700 Rh1CG439500 Rh1DG459500 Rh2AG256200 Rh2AG256300 Rh2AG293800 Rh2BG193800 Rh2CG261600 Rh2DG264600 Rh4DG441900 Rh5AG227200 Rh5AG268100 Rh5BG209000 Rh5BG286400 Rh6CG067100 Rh6DG064000 Rh7BG421000
rosa_wichuraiana	Rw1G002380 Rw1G040340 Rw5G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	589
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	1 cut(s)	606
AcuI	CTGAAG	1 cut(s)	533
AfiI	CCNNNNNNNGG	5 cut(s)	154, 245, 490, 552, 589
AgsI	TTSAA	3 cut(s)	409, 572, 606
AhlI	ACTAGT	1 cut(s)	446
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	5 cut(s)	37, 227, 350, 512, 595
AluI	AGCT	5 cut(s)	37, 227, 350, 512, 595
AlwI	GGATC	1 cut(s)	606
AlwNI	CAGNNNCTG	1 cut(s)	418
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	454
Asp700I	GAANNNNTTC	1 cut(s)	513
AspS9I	GGNCC	3 cut(s)	59, 145, 533
AsuC2I	CCSGG	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	178, 505
AvaII	GGWCC	3 cut(s)	59, 145, 533
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	64
BciVI	GTATCC	1 cut(s)	438
BclI	TGATCA	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	378
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	3 cut(s)	290, 447, 485
BfuI	GTATCC	1 cut(s)	438
BisI	GCNGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	456
Bme1390I	CCNGG	2 cut(s)	64, 378
Bme18I	GGWCC	3 cut(s)	59, 145, 533
BmgT120I	GGNCC	3 cut(s)	59, 145, 533
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	64, 378
BmsI	GCATC	4 cut(s)	7, 167, 404, 424
BpuMI	CCSGG	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	5 cut(s)	154, 245, 490, 552, 589
Bse1I	ACTGG	2 cut(s)	370, 495
Bse3DI	GCAATG	2 cut(s)	143, 184
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	3 cut(s)	46, 235, 511
BseLI	CCNNNNNNNGG	5 cut(s)	154, 245, 490, 552, 589
BseMI	GCAATG	2 cut(s)	143, 184
BseNI	ACTGG	2 cut(s)	370, 495
BseRI	GAGGAG	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	466
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	5 cut(s)	154, 245, 490, 552, 589
BsmI	GAATGC	2 cut(s)	179, 311
BsnI	GGCC	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	99, 598
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	606
BspQI	GCTCTTC	1 cut(s)	519
BsrDI	GCAATG	2 cut(s)	143, 184
BsrI	ACTGG	2 cut(s)	370, 495
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	2 cut(s)	99, 598
Bst2UI	CCWGG	1 cut(s)	64
Bst6I	CTCTTC	3 cut(s)	407, 491, 519
BstDEI	CTNAG	2 cut(s)	11, 162
BstF5I	GGATG	3 cut(s)	46, 235, 511
BstKTI	GATC	2 cut(s)	102, 601
BstMBI	GATC	2 cut(s)	99, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	62, 376
BstV1I	GCAGC	1 cut(s)	466
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BsuI	GTATCC	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	3 cut(s)	46, 235, 511
CaiI	CAGNNNCTG	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	59, 145, 533
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	3 cut(s)	132, 518, 628
DdeI	CTNAG	2 cut(s)	11, 162
DpnI	GATC	2 cut(s)	101, 600
DpnII	GATC	2 cut(s)	99, 598
Eam1104I	CTCTTC	3 cut(s)	407, 491, 519
EarI	CTCTTC	3 cut(s)	407, 491, 519
Eco47I	GGWCC	3 cut(s)	59, 145, 533
Eco57I	CTGAAG	1 cut(s)	533
EcoO109I	RGGNCCY	2 cut(s)	145, 533
EcoRII	CCWGG	1 cut(s)	62
FaeI	CATG	3 cut(s)	135, 521, 631
FaiI	YATR	8 cut(s)	123, 133, 224, 264, 356, 519, 561, 629
FatI	CATG	3 cut(s)	131, 517, 627
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	455
FokI	GGATG	3 cut(s)	53, 222, 518
Fsp4HI	GCNGC	1 cut(s)	455
FspBI	CTAG	3 cut(s)	290, 447, 485
GluI	GCNGC	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	377
Hin1II	CATG	3 cut(s)	135, 521, 631
HincII	GTYRAC	2 cut(s)	187, 220
HindII	GTYRAC	2 cut(s)	187, 220
HinfI	GANTC	4 cut(s)	81, 329, 415, 572
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	2 cut(s)	178, 505
Hpy166II	GTNNAC	3 cut(s)	69, 187, 220
Hpy188I	TCNGA	4 cut(s)	343, 424, 552, 577
Hpy188III	TCNNGA	3 cut(s)	23, 406, 431
Hpy8I	GTNNAC	3 cut(s)	69, 187, 220
HpyAV	CCTTC	5 cut(s)	136, 163, 249, 524, 557
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	4 cut(s)	89, 177, 395, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	11, 162
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	3 cut(s)	135, 521, 631
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	99, 598
LguI	GCTCTTC	1 cut(s)	519
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	4 cut(s)	7, 167, 404, 424
MaeI	CTAG	3 cut(s)	290, 447, 485
MaeII	ACGT	1 cut(s)	272
MalI	GATC	2 cut(s)	101, 600
MboI	GATC	2 cut(s)	99, 598
MboII	GAAGA	5 cut(s)	221, 306, 394, 506, 508
MflI	RGATCY	1 cut(s)	598
MluCI	AATT	3 cut(s)	105, 459, 587
MmeI	TCCRAC	2 cut(s)	37, 483
MnlI	CCTC	7 cut(s)	208, 242, 309, 492, 546, 546, 556
MroXI	GAANNNNTTC	1 cut(s)	513
MslI	CAYNNNNRTG	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	37
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	64, 378
Mva1269I	GAATGC	2 cut(s)	179, 311
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	392
NciI	CCSGG	1 cut(s)	378
NdeII	GATC	2 cut(s)	99, 598
NlaIII	CATG	3 cut(s)	135, 521, 631
NlaIV	GGNNCC	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	519
PctI	GAATGC	2 cut(s)	179, 311
PdmI	GAANNNNTTC	1 cut(s)	513
PfeI	GAWTC	4 cut(s)	81, 329, 415, 572
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	1 cut(s)	456
PpuMI	RGGWCCY	2 cut(s)	145, 533
Psp5II	RGGWCCY	2 cut(s)	145, 533
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	3 cut(s)	59, 145, 533
PspPPI	RGGWCCY	2 cut(s)	145, 533
PstNI	CAGNNNCTG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	598
PvuII	CAGCTG	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	519
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	2 cut(s)	99, 598
Sau96I	GGNCC	3 cut(s)	59, 145, 533
ScrFI	CCNGG	2 cut(s)	64, 378
SfaNI	GCATC	4 cut(s)	7, 167, 404, 424
SinI	GGWCC	3 cut(s)	59, 145, 533
SmiMI	CAYNNNNRTG	1 cut(s)	136
SpeI	ACTAGT	1 cut(s)	446
Sse9I	AATT	3 cut(s)	105, 459, 587
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	3 cut(s)	290, 447, 485
StyD4I	CCNGG	2 cut(s)	62, 376
TaiI	ACGT	1 cut(s)	275
TasI	AATT	3 cut(s)	105, 459, 587
TfiI	GAWTC	4 cut(s)	81, 329, 415, 572
TseI	GCWGC	1 cut(s)	454
TspDTI	ATGAA	4 cut(s)	224, 350, 506, 522
Van91I	CCANNNNNTGG	1 cut(s)	589
VpaK11BI	GGWCC	3 cut(s)	59, 145, 533
XmnI	GAANNNNTTC	1 cut(s)	513
XspI	CTAG	3 cut(s)	290, 447, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.