Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002676

Physical Location & Seq

Genomic Coordinates Reverse (-)

416601 .. 419301

Gene Structure 2701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026086

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGATACCATCAAATGAAATTCCAGAGCCCTCGGCGAATTCGACTGGTGATGCTGAGCAGCAGCAACATGATGCTGTTGTGGTTCCTGAGGCATTAAATCACGGATCCAAGGACTCCAAGCACGAGATTGCTGATGGTGAAGTTAGAGGCATACTAGAAGTTATTGCATCCACTGGGAGATTTTGCATCTACCCGAACCTCTCAAAGCTTGCTCTAGCTCTAGAAAAGAACCTATTGGTGACATCTATGCTGACAATCTCAATGGATCCGTATCCGCAATCAGTGTTGCAAAAGACAGATGAACCAGAAAAAGCAAGTGAAGAACCTAAACTTCACTCTGACTCGGTGCAAAATGGGGTGGAACCTATGGTAGGTGACAGGGATGAAGTAATGGTAGAGGTTGAGCAGGCCGATATCGATGATGACATGGCCATTGCCATGGAAGCTTTTGAAGATATAGTTGGGTCATCAGAAACAAATTCAGTGCAGACCAATAACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

169

Amino Acids

18.22

Weight (kDa)

4.13

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17070 AT5G17070
fragaria_vesca	FvH4_7g33790 FvH4_7g33790 FvH4_7g33790 FvH4_7g33790
malus_domestica	MD01G1234200.v1.1 MD07G1306400.v1.1
prunus_persica	Prupe.2G324400_v2.0.a1 Prupe.2G324400_v2.0.a1
pyrus_communis	pycom01g24270 pycom07g27940
rosa_chinensis	RchiOBHm_Chr1g0383921
rosa_laevigata	RLG00000026086
rosa_multiflora	Rmu_co8486869.1_g000001 Rmu_sc0005139.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277150
rosa_rugosa	Rorug01G0443000
rosa_samantha	Rh1AG189200 Rh1AG469000 Rh1BG426700 Rh1CG439500 Rh1DG459500 Rh2AG256200 Rh2AG256300 Rh2AG293800 Rh2BG193800 Rh2CG261600 Rh2DG264600 Rh4DG441900 Rh5AG227200 Rh5AG268100 Rh5BG209000 Rh5BG286400 Rh6CG067100 Rh6DG064000 Rh7BG421000
rosa_wichuraiana	Rw1G002380 Rw1G040340 Rw5G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	4 cut(s)	102, 115, 263, 276
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	3 cut(s)	21, 40, 481
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	1 cut(s)	455
AjuI	GAANNNNNNNTTGG	2 cut(s)	447, 479
AluBI	AGCT	3 cut(s)	211, 221, 449
AluI	AGCT	3 cut(s)	211, 221, 449
AlwI	GGATC	4 cut(s)	102, 115, 263, 276
AoxI	GGCC	2 cut(s)	411, 432
ApeKI	GCWGC	2 cut(s)	61, 64
ApoI	RAATTY	3 cut(s)	21, 40, 481
AsuHPI	GGTGA	4 cut(s)	62, 152, 253, 389
AxyI	CCTNAGG	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	434
BamHI	GGATCC	2 cut(s)	107, 268
BanII	GRGCYC	1 cut(s)	33
BauI	CACGAG	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	73, 76
BccI	CCATC	2 cut(s)	19, 131
BciVI	GTATCC	1 cut(s)	285
BfaI	CTAG	3 cut(s)	158, 218, 224
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	2 cut(s)	62, 65
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	2 cut(s)	63, 66
BmiI	GGNNCC	4 cut(s)	87, 109, 270, 366
BmrI	ACTGGG	1 cut(s)	186
BmsI	GCATC	4 cut(s)	43, 64, 179, 198
BmuI	ACTGGG	1 cut(s)	186
Bpu1102I	GCTNAGC	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	420
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	33, 111, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	52, 181
Bse21I	CCTNAGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	435
Bse8I	GATNNNNATC	1 cut(s)	273
BseCI	ATCGAT	1 cut(s)	420
BseDI	CCNNGG	3 cut(s)	33, 111, 441
BseGI	GGATG	2 cut(s)	170, 391
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	48, 81
BseNI	ACTGG	2 cut(s)	52, 181
BseXI	GCAGC	2 cut(s)	73, 76
BshFI	GGCC	2 cut(s)	413, 434
BshVI	ATCGAT	1 cut(s)	420
BslI	CCNNNNNNNGG	1 cut(s)	374
BsnI	GGCC	2 cut(s)	413, 434
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	107, 268
Bsp1720I	GCTNAGC	1 cut(s)	57
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	2 cut(s)	413, 434
BspCNI	CTCAG	2 cut(s)	49, 82
BspDI	ATCGAT	1 cut(s)	420
BspLI	GGNNCC	4 cut(s)	87, 109, 270, 366
BspPI	GGATC	4 cut(s)	102, 115, 263, 276
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	2 cut(s)	52, 181
BssECI	CCNNGG	3 cut(s)	33, 111, 441
BssMI	GATC	2 cut(s)	107, 268
BssSI	CACGAG	1 cut(s)	125
BssT1I	CCWWGG	2 cut(s)	111, 441
Bst2BI	CACGAG	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	213, 411
BstDEI	CTNAG	3 cut(s)	57, 90, 504
BstDSI	CCRYGG	1 cut(s)	441
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	170, 391
BstKTI	GATC	2 cut(s)	110, 271
BstMBI	GATC	2 cut(s)	107, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	73, 76
BstX2I	RGATCY	2 cut(s)	107, 268
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	2 cut(s)	107, 268
Bsu15I	ATCGAT	1 cut(s)	420
Bsu36I	CCTNAGG	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	413, 434
BsuTUI	ATCGAT	1 cut(s)	420
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	170, 391
BtsIMutI	CAGTG	3 cut(s)	174, 291, 492
Cac8I	GCNNGC	2 cut(s)	213, 411
ClaI	ATCGAT	1 cut(s)	420
CviAII	CATG	3 cut(s)	71, 430, 442
CviJI	RGCY	6 cut(s)	31, 211, 221, 413, 434, 449
CviKI_1	RGCY	6 cut(s)	31, 211, 221, 413, 434, 449
DdeI	CTNAG	3 cut(s)	57, 90, 504
DpnI	GATC	2 cut(s)	109, 270
DpnII	GATC	2 cut(s)	107, 268
EaeI	YGGCCR	1 cut(s)	432
Eco130I	CCWWGG	2 cut(s)	111, 441
Eco24I	GRGCYC	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	418
Eco81I	CCTNAGG	1 cut(s)	90
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	40
EcoRV	GATATC	1 cut(s)	418
EcoT14I	CCWWGG	2 cut(s)	111, 441
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	2 cut(s)	111, 441
FaeI	CATG	3 cut(s)	74, 433, 445
FaiI	YATR	7 cut(s)	72, 155, 251, 371, 431, 443, 461
FatI	CATG	3 cut(s)	70, 429, 441
Fnu4HI	GCNGC	2 cut(s)	62, 65
FokI	GGATG	2 cut(s)	157, 398
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	2 cut(s)	62, 65
FspBI	CTAG	3 cut(s)	158, 218, 224
GluI	GCNGC	2 cut(s)	62, 65
HaeIII	GGCC	2 cut(s)	413, 434
Hin1II	CATG	3 cut(s)	74, 433, 445
HindIII	AAGCTT	2 cut(s)	209, 447
HinfI	GANTC	2 cut(s)	116, 344
HphI	GGTGA	4 cut(s)	62, 152, 253, 389
Hpy188I	TCNGA	2 cut(s)	343, 475
Hpy188III	TCNNGA	3 cut(s)	26, 89, 224
HpyCH4V	TGCA	5 cut(s)	170, 189, 292, 352, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	3 cut(s)	57, 90, 504
Hsp92II	CATG	3 cut(s)	74, 433, 445
Kzo9I	GATC	2 cut(s)	107, 268
LpnPI	CCDG	7 cut(s)	33, 39, 102, 162, 321, 367, 395
Lsp1109I	GCAGC	2 cut(s)	73, 76
LweI	GCATC	4 cut(s)	43, 64, 179, 198
MaeI	CTAG	3 cut(s)	158, 218, 224
MaeIII	GTNAC	2 cut(s)	241, 377
MalI	GATC	2 cut(s)	109, 270
MboI	GATC	2 cut(s)	107, 268
MboII	GAAGA	2 cut(s)	335, 467
MflI	RGATCY	2 cut(s)	107, 268
MhlI	GDGCHC	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	3 cut(s)	21, 40, 481
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	2 cut(s)	110, 338
MnlI	CCTC	5 cut(s)	43, 85, 143, 212, 394
Mox20I	TGGCCA	1 cut(s)	434
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	1 cut(s)	98
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	446
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	2 cut(s)	107, 268
NlaIII	CATG	3 cut(s)	74, 433, 445
NlaIV	GGNNCC	4 cut(s)	87, 109, 270, 366
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	241, 377
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	63, 66
PleI	GAGTC	2 cut(s)	110, 338
PpsI	GAGTC	2 cut(s)	110, 338
PspN4I	GGNNCC	4 cut(s)	87, 109, 270, 366
PsuI	RGATCY	2 cut(s)	107, 268
RseI	CAYNNNNRTG	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	2 cut(s)	62, 65
Sau3AI	GATC	2 cut(s)	107, 268
SchI	GAGTC	2 cut(s)	110, 338
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	9 cut(s)	204, 213, 223, 237, 331, 370, 379, 405, 451
SfaNI	GCATC	4 cut(s)	43, 64, 179, 198
SmiMI	CAYNNNNRTG	1 cut(s)	440
Sse9I	AATT	3 cut(s)	21, 40, 481
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	3 cut(s)	158, 218, 224
StyI	CCWWGG	2 cut(s)	111, 441
TaqI	TCGA	2 cut(s)	44, 420
TasI	AATT	3 cut(s)	21, 40, 481
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	3 cut(s)	181, 291, 492
TseFI	GTSAC	2 cut(s)	241, 377
TseI	GCWGC	2 cut(s)	61, 64
Tsp45I	GTSAC	2 cut(s)	241, 377
TspDTI	ATGAA	3 cut(s)	33, 318, 402
TspGWI	ACGGA	2 cut(s)	120, 261
TspRI	CASTG	3 cut(s)	181, 291, 492
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	3 cut(s)	21, 40, 481
XbaI	TCTAGA	1 cut(s)	223
XspI	CTAG	3 cut(s)	158, 218, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.