Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005139.1

Orthogroup ID

OG0002676

Physical Location & Seq

Genomic Coordinates Reverse (-)

128915 .. 131580

Gene Structure 2666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005139.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggagataccatcaagtgaaattccagagccctcggcgaattcaaccggtgatgctgagcagcagcaacatgatgttgttgtggtggttcctgaggcattaaatcacggatccaaggactccaagcacgagattgctgatggtgaagttagaggcatactagaagttattgcatccactgggagattttggcatgattgggacaaattaaagggcatgctatcgtttcagctgaagcaggttctgtcagagtatcctgatgctgaaaagactagtgagcagcaaattactactttaggagaaacctacctagaactggtgaagaggttggatgaagctcttcatggttttactgaaggtcctccatttacccttcagaggctttgtgagatcctattggatgcacgcagcatctacccgaacctctcaaagcttgctctagctctagaaaagaacctattggtgacatctatgctgacaatctcaacggatccgtatccgcaatcagtgttgcaaaagccagatgaaccagaaaaagcatgtgaagaacctaaacttcaccttgactcggtgcaaaatggggtggaacctatggtaggtgacagggatgaagtaatggtagaggttgagcaggccgatatcgacgatgacatggccattgccatggaagcttttgaagatatagttgggtcatcagaaacaaattcagtgcagaccaataactcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

242

Amino Acids

26.82

Weight (kDa)

4.31

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17070 AT5G17070
fragaria_vesca	FvH4_7g33790 FvH4_7g33790 FvH4_7g33790 FvH4_7g33790
malus_domestica	MD01G1234200.v1.1 MD07G1306400.v1.1
prunus_persica	Prupe.2G324400_v2.0.a1 Prupe.2G324400_v2.0.a1
pyrus_communis	pycom01g24270 pycom07g27940
rosa_chinensis	RchiOBHm_Chr1g0383921
rosa_laevigata	RLG00000026086
rosa_multiflora	Rmu_co8486869.1_g000001 Rmu_sc0005139.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277150
rosa_rugosa	Rorug01G0443000
rosa_samantha	Rh1AG189200 Rh1AG469000 Rh1BG426700 Rh1CG439500 Rh1DG459500 Rh2AG256200 Rh2AG256300 Rh2AG293800 Rh2BG193800 Rh2CG261600 Rh2DG264600 Rh4DG441900 Rh5AG227200 Rh5AG268100 Rh5BG209000 Rh5BG286400 Rh6CG067100 Rh6DG064000 Rh7BG421000
rosa_wichuraiana	Rw1G002380 Rw1G040340 Rw5G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	229
AciI	CCGC	1 cut(s)	500
AclWI	GGATC	5 cut(s)	105, 118, 385, 485, 498
AcoI	YGGCCR	1 cut(s)	654
AcsI	RAATTY	3 cut(s)	21, 40, 703
AcuI	CTGAAG	3 cut(s)	254, 359, 375
AfiI	CCNNNNNNNGG	4 cut(s)	316, 378, 568, 596
AgeI	ACCGGT	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	45, 677
AhlI	ACTAGT	1 cut(s)	272
AjuI	GAANNNNNNNTTGG	2 cut(s)	669, 701
AluBI	AGCT	5 cut(s)	232, 338, 433, 443, 671
AluI	AGCT	5 cut(s)	232, 338, 433, 443, 671
AlwI	GGATC	5 cut(s)	105, 118, 385, 485, 498
AlwNI	CAGNNNCTG	1 cut(s)	244
AoxI	GGCC	2 cut(s)	633, 654
ApeKI	GCWGC	4 cut(s)	61, 64, 280, 408
ApoI	RAATTY	3 cut(s)	21, 40, 703
AsiGI	ACCGGT	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	6 cut(s)	62, 155, 331, 475, 551, 611
AvaII	GGWCC	1 cut(s)	359
AxyI	CCTNAGG	1 cut(s)	93
BalI	TGGCCA	1 cut(s)	656
BamHI	GGATCC	2 cut(s)	110, 490
BanII	GRGCYC	1 cut(s)	33
BauI	CACGAG	1 cut(s)	128
BbvI	GCAGC	4 cut(s)	73, 76, 292, 420
BccI	CCATC	2 cut(s)	19, 134
BciVI	GTATCC	2 cut(s)	264, 507
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	5 cut(s)	161, 273, 311, 440, 446
BfuAI	ACCTGC	1 cut(s)	229
BfuI	GTATCC	2 cut(s)	264, 507
BisI	GCNGC	4 cut(s)	62, 65, 281, 409
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	4 cut(s)	63, 66, 282, 410
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	4 cut(s)	90, 112, 492, 588
BmrI	ACTGGG	1 cut(s)	189
BmsI	GCATC	5 cut(s)	43, 182, 250, 391, 420
BmuI	ACTGGG	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	495
BsaJI	CCNNGG	3 cut(s)	33, 114, 663
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	4 cut(s)	316, 378, 568, 596
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	184, 321
Bse21I	CCTNAGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	495
BseDI	CCNNGG	3 cut(s)	33, 114, 663
BseGI	GGATG	4 cut(s)	173, 337, 406, 613
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	4 cut(s)	316, 378, 568, 596
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	48, 84
BseNI	ACTGG	2 cut(s)	184, 321
BseXI	GCAGC	4 cut(s)	73, 76, 292, 420
BshFI	GGCC	2 cut(s)	635, 656
BshTI	ACCGGT	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	4 cut(s)	316, 378, 568, 596
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	635, 656
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	110, 390, 490
Bsp1720I	GCTNAGC	1 cut(s)	57
Bsp19I	CCATGG	1 cut(s)	663
BspACI	CCGC	1 cut(s)	500
BspANI	GGCC	2 cut(s)	635, 656
BspCNI	CTCAG	2 cut(s)	49, 85
BspLI	GGNNCC	4 cut(s)	90, 112, 492, 588
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	5 cut(s)	105, 118, 385, 485, 498
BspQI	GCTCTTC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	657
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	184, 321
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	3 cut(s)	33, 114, 663
BssMI	GATC	3 cut(s)	110, 390, 490
BssSI	CACGAG	1 cut(s)	128
BssT1I	CCWWGG	2 cut(s)	114, 663
Bst2BI	CACGAG	1 cut(s)	128
Bst6I	CTCTTC	2 cut(s)	317, 345
BstC8I	GCNNGC	4 cut(s)	218, 406, 435, 633
BstDEI	CTNAG	3 cut(s)	57, 93, 726
BstDSI	CCRYGG	1 cut(s)	663
BstENI	CCTNNNNNAGG	1 cut(s)	594
BstF5I	GGATG	4 cut(s)	173, 337, 406, 613
BstKTI	GATC	3 cut(s)	113, 393, 493
BstMBI	GATC	3 cut(s)	110, 390, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	668
BstNSI	RCATGY	2 cut(s)	220, 543
BstV1I	GCAGC	4 cut(s)	73, 76, 292, 420
BstX2I	RGATCY	3 cut(s)	110, 390, 490
BstXI	CCANNNNNNTGG	1 cut(s)	664
BstYI	RGATCY	3 cut(s)	110, 390, 490
Bsu36I	CCTNAGG	1 cut(s)	93
BsuI	GTATCC	2 cut(s)	264, 507
BsuRI	GGCC	2 cut(s)	635, 656
BtgI	CCRYGG	1 cut(s)	663
BtsCI	GGATG	4 cut(s)	173, 337, 406, 613
BtsIMutI	CAGTG	3 cut(s)	177, 513, 714
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	4 cut(s)	218, 406, 435, 633
CaiI	CAGNNNCTG	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	359
CspAI	ACCGGT	1 cut(s)	47
CviAII	CATG	7 cut(s)	71, 194, 217, 344, 540, 652, 664
DdeI	CTNAG	3 cut(s)	57, 93, 726
DpnI	GATC	3 cut(s)	112, 392, 492
DpnII	GATC	3 cut(s)	110, 390, 490
EaeI	YGGCCR	1 cut(s)	654
Eam1104I	CTCTTC	2 cut(s)	317, 345
EarI	CTCTTC	2 cut(s)	317, 345
Eco130I	CCWWGG	2 cut(s)	114, 663
Eco24I	GRGCYC	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	640
Eco47I	GGWCC	1 cut(s)	359
Eco57I	CTGAAG	3 cut(s)	254, 359, 375
Eco81I	CCTNAGG	1 cut(s)	93
EcoNI	CCTNNNNNAGG	1 cut(s)	594
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	40
EcoRV	GATATC	1 cut(s)	640
EcoT14I	CCWWGG	2 cut(s)	114, 663
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	2 cut(s)	114, 663
FaeI	CATG	7 cut(s)	74, 197, 220, 347, 543, 655, 667
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	7 cut(s)	70, 193, 216, 343, 539, 651, 663
Fnu4HI	GCNGC	4 cut(s)	62, 65, 281, 409
FokI	GGATG	4 cut(s)	160, 344, 413, 620
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	4 cut(s)	62, 65, 281, 409
FspBI	CTAG	5 cut(s)	161, 273, 311, 440, 446
GluI	GCNGC	4 cut(s)	62, 65, 281, 409
HaeIII	GGCC	2 cut(s)	635, 656
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	7 cut(s)	74, 197, 220, 347, 543, 655, 667
HindIII	AAGCTT	2 cut(s)	431, 669
HinfI	GANTC	2 cut(s)	119, 566
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	6 cut(s)	62, 155, 331, 475, 551, 611
Hpy188I	TCNGA	3 cut(s)	250, 378, 697
Hpy188III	TCNNGA	4 cut(s)	26, 92, 257, 446
Hpy99I	CGWCG	1 cut(s)	647
HpyAV	CCTTC	2 cut(s)	350, 383
HpyCH4V	TGCA	5 cut(s)	173, 404, 514, 574, 712
HpyF10VI	GCNNNNNNNGC	1 cut(s)	668
HpyF3I	CTNAG	3 cut(s)	57, 93, 726
Hsp92II	CATG	7 cut(s)	74, 197, 220, 347, 543, 655, 667
Kzo9I	GATC	3 cut(s)	110, 390, 490
LguI	GCTCTTC	1 cut(s)	345
Lsp1109I	GCAGC	4 cut(s)	73, 76, 292, 420
LweI	GCATC	5 cut(s)	43, 182, 250, 391, 420
MaeI	CTAG	5 cut(s)	161, 273, 311, 440, 446
MaeIII	GTNAC	2 cut(s)	463, 599
MalI	GATC	3 cut(s)	112, 392, 492
MboI	GATC	3 cut(s)	110, 390, 490
MboII	GAAGA	4 cut(s)	332, 334, 557, 689
MflI	RGATCY	3 cut(s)	110, 390, 490
MhlI	GDGCHC	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	656
MluCI	AATT	5 cut(s)	21, 40, 206, 285, 703
MluNI	TGGCCA	1 cut(s)	656
MlyI	GAGTC	2 cut(s)	113, 560
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	8 cut(s)	43, 88, 146, 318, 372, 372, 434, 616
Mox20I	TGGCCA	1 cut(s)	656
MroXI	GAANNNNTTC	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	656
MseI	TTAA	2 cut(s)	101, 209
MslI	CAYNNNNRTG	1 cut(s)	662
Msp20I	TGGCCA	1 cut(s)	656
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	668
NcoI	CCATGG	1 cut(s)	663
NdeII	GATC	3 cut(s)	110, 390, 490
NlaIII	CATG	7 cut(s)	74, 197, 220, 347, 543, 655, 667
NlaIV	GGNNCC	4 cut(s)	90, 112, 492, 588
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	463, 599
NspI	RCATGY	2 cut(s)	220, 543
PaeI	GCATGC	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	339
PinAI	ACCGGT	1 cut(s)	47
PkrI	GCNGC	4 cut(s)	63, 66, 282, 410
PleI	GAGTC	2 cut(s)	113, 560
PpsI	GAGTC	2 cut(s)	113, 560
PpuMI	RGGWCCY	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	359
PspN4I	GGNNCC	4 cut(s)	90, 112, 492, 588
PspPI	GGNCC	1 cut(s)	359
PspPPI	RGGWCCY	1 cut(s)	359
PstNI	CAGNNNCTG	1 cut(s)	244
PsuI	RGATCY	3 cut(s)	110, 390, 490
PvuII	CAGCTG	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	662
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	101, 209
SatI	GCNGC	4 cut(s)	62, 65, 281, 409
Sau3AI	GATC	3 cut(s)	110, 390, 490
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	2 cut(s)	113, 560
SduI	GDGCHC	1 cut(s)	33
SfaNI	GCATC	5 cut(s)	43, 182, 250, 391, 420
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	662
SpeI	ACTAGT	1 cut(s)	272
SphI	GCATGC	1 cut(s)	220
Sse9I	AATT	5 cut(s)	21, 40, 206, 285, 703
SsiI	CCGC	1 cut(s)	500
SspMI	CTAG	5 cut(s)	161, 273, 311, 440, 446
StyI	CCWWGG	2 cut(s)	114, 663
TaqI	TCGA	1 cut(s)	642
TasI	AATT	5 cut(s)	21, 40, 206, 285, 703
Tru1I	TTAA	2 cut(s)	101, 209
Tru9I	TTAA	2 cut(s)	101, 209
TscAI	CASTG	3 cut(s)	184, 513, 714
TseFI	GTSAC	2 cut(s)	463, 599
TseI	GCWGC	4 cut(s)	61, 64, 280, 408
Tsp45I	GTSAC	2 cut(s)	463, 599
TspDTI	ATGAA	4 cut(s)	332, 348, 540, 624
TspGWI	ACGGA	3 cut(s)	123, 483, 503
TspRI	CASTG	3 cut(s)	184, 513, 714
VpaK11BI	GGWCC	1 cut(s)	359
XagI	CCTNNNNNAGG	1 cut(s)	594
XapI	RAATTY	3 cut(s)	21, 40, 703
XbaI	TCTAGA	1 cut(s)	445
XceI	RCATGY	2 cut(s)	220, 543
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	5 cut(s)	161, 273, 311, 440, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.