Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8486869.1

Orthogroup ID

OG0002676

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2175

Gene Structure 2175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8486869.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 619 bp

atccaaggactccaagcacgagattgctgatggtgaagttagaggcatactagaagttattgcatccactgggagattttggcatgattgggacaaattaaagggcatgctatcgtttcagctgaagcaggttctgtcagagtatcctgatgctgaaaagactagtgagcagcaaattactactttaggagaaacctacctagaactggtgaagaggttggatgaagctcttcatggttttactgaaggtcctccatttacccttcagaggctttgtgagatcctattggatgcacgcagcatctacccgaacctctcaaagcttgctctagctctagaaaagaacctattggtgacatctatgctgacaatctcaacggatccgtatccgcaatcagtgttgcaaaagccagatgaaccagaaaaagcatgtgaagaacctaaacttcaccttgactcggtgcaaaatggggtggaacctatggtaggtgacagggatgaagtaatggtagaggttgagcaggccgatatcgacgatgacatggccattgccatggaagcttttgaagatatagttgggtcatcagaaacaaattcagtgcagaccaataactcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

205

Amino Acids

22.92

Weight (kDa)

4.37

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17070 AT5G17070
fragaria_vesca	FvH4_7g33790 FvH4_7g33790 FvH4_7g33790 FvH4_7g33790
malus_domestica	MD01G1234200.v1.1 MD07G1306400.v1.1
prunus_persica	Prupe.2G324400_v2.0.a1 Prupe.2G324400_v2.0.a1
pyrus_communis	pycom01g24270 pycom07g27940
rosa_chinensis	RchiOBHm_Chr1g0383921
rosa_laevigata	RLG00000026086
rosa_multiflora	Rmu_co8486869.1_g000001 Rmu_sc0005139.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277150
rosa_rugosa	Rorug01G0443000
rosa_samantha	Rh1AG189200 Rh1AG469000 Rh1BG426700 Rh1CG439500 Rh1DG459500 Rh2AG256200 Rh2AG256300 Rh2AG293800 Rh2BG193800 Rh2CG261600 Rh2DG264600 Rh4DG441900 Rh5AG227200 Rh5AG268100 Rh5BG209000 Rh5BG286400 Rh6CG067100 Rh6DG064000 Rh7BG421000
rosa_wichuraiana	Rw1G002380 Rw1G040340 Rw5G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	119
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	3 cut(s)	275, 375, 388
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	1 cut(s)	593
AcuI	CTGAAG	3 cut(s)	144, 249, 265
AfiI	CCNNNNNNNGG	4 cut(s)	206, 268, 458, 486
AgsI	TTSAA	1 cut(s)	567
AhlI	ACTAGT	1 cut(s)	162
AjuI	GAANNNNNNNTTGG	2 cut(s)	559, 591
AluBI	AGCT	5 cut(s)	122, 228, 323, 333, 561
AluI	AGCT	5 cut(s)	122, 228, 323, 333, 561
AlwI	GGATC	3 cut(s)	275, 375, 388
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	2 cut(s)	523, 544
ApeKI	GCWGC	2 cut(s)	170, 298
ApoI	RAATTY	1 cut(s)	593
Asp700I	GAANNNNTTC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	5 cut(s)	45, 221, 365, 441, 501
AvaII	GGWCC	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	546
BamHI	GGATCC	1 cut(s)	380
BauI	CACGAG	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	182, 310
BccI	CCATC	1 cut(s)	24
BciVI	GTATCC	2 cut(s)	154, 397
BcuI	ACTAGT	1 cut(s)	162
BfaI	CTAG	5 cut(s)	51, 163, 201, 330, 336
BfuAI	ACCTGC	1 cut(s)	119
BfuI	GTATCC	2 cut(s)	154, 397
BisI	GCNGC	2 cut(s)	171, 299
BlsI	GCNGC	2 cut(s)	172, 300
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	2 cut(s)	382, 478
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	4 cut(s)	72, 140, 281, 310
BmuI	ACTGGG	1 cut(s)	79
BsaBI	GATNNNNATC	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	4, 553
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 268, 458, 486
Bse1I	ACTGG	2 cut(s)	74, 211
Bse3DI	GCAATG	1 cut(s)	547
Bse8I	GATNNNNATC	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	4, 553
BseGI	GGATG	4 cut(s)	63, 227, 296, 503
BseJI	GATNNNNATC	1 cut(s)	385
BseLI	CCNNNNNNNGG	4 cut(s)	206, 268, 458, 486
BseMI	GCAATG	1 cut(s)	547
BseNI	ACTGG	2 cut(s)	74, 211
BseXI	GCAGC	2 cut(s)	182, 310
BshFI	GGCC	2 cut(s)	525, 546
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	4 cut(s)	206, 268, 458, 486
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	525, 546
Bsp143I	GATC	2 cut(s)	280, 380
Bsp19I	CCATGG	1 cut(s)	553
BspACI	CCGC	1 cut(s)	390
BspANI	GGCC	2 cut(s)	525, 546
BspLI	GGNNCC	2 cut(s)	382, 478
BspMI	ACCTGC	1 cut(s)	119
BspPI	GGATC	3 cut(s)	275, 375, 388
BspQI	GCTCTTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	547
BsrI	ACTGG	2 cut(s)	74, 211
BssECI	CCNNGG	2 cut(s)	4, 553
BssMI	GATC	2 cut(s)	280, 380
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	2 cut(s)	4, 553
Bst2BI	CACGAG	1 cut(s)	18
Bst6I	CTCTTC	2 cut(s)	207, 235
BstC8I	GCNNGC	4 cut(s)	108, 296, 325, 523
BstDEI	CTNAG	1 cut(s)	616
BstDSI	CCRYGG	1 cut(s)	553
BstENI	CCTNNNNNAGG	1 cut(s)	484
BstF5I	GGATG	4 cut(s)	63, 227, 296, 503
BstKTI	GATC	2 cut(s)	283, 383
BstMBI	GATC	2 cut(s)	280, 380
BstMWI	GCNNNNNNNGC	1 cut(s)	558
BstNSI	RCATGY	2 cut(s)	110, 433
BstV1I	GCAGC	2 cut(s)	182, 310
BstX2I	RGATCY	2 cut(s)	280, 380
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	2 cut(s)	280, 380
BsuI	GTATCC	2 cut(s)	154, 397
BsuRI	GGCC	2 cut(s)	525, 546
BtgI	CCRYGG	1 cut(s)	553
BtsCI	GGATG	4 cut(s)	63, 227, 296, 503
BtsIMutI	CAGTG	3 cut(s)	67, 403, 604
BveI	ACCTGC	1 cut(s)	119
Cac8I	GCNNGC	4 cut(s)	108, 296, 325, 523
CaiI	CAGNNNCTG	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	249
CviAII	CATG	6 cut(s)	84, 107, 234, 430, 542, 554
CviJI	RGCY	9 cut(s)	122, 228, 272, 323, 333, 410, 525, 546, 561
CviKI_1	RGCY	9 cut(s)	122, 228, 272, 323, 333, 410, 525, 546, 561
DdeI	CTNAG	1 cut(s)	616
DpnI	GATC	2 cut(s)	282, 382
DpnII	GATC	2 cut(s)	280, 380
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	2 cut(s)	207, 235
EarI	CTCTTC	2 cut(s)	207, 235
Eco130I	CCWWGG	2 cut(s)	4, 553
Eco32I	GATATC	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	249
Eco57I	CTGAAG	3 cut(s)	144, 249, 265
EcoNI	CCTNNNNNAGG	1 cut(s)	484
EcoO109I	RGGNCCY	1 cut(s)	249
EcoRV	GATATC	1 cut(s)	530
EcoT14I	CCWWGG	2 cut(s)	4, 553
ErhI	CCWWGG	2 cut(s)	4, 553
FaeI	CATG	6 cut(s)	87, 110, 237, 433, 545, 557
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	6 cut(s)	83, 106, 233, 429, 541, 553
Fnu4HI	GCNGC	2 cut(s)	171, 299
FokI	GGATG	4 cut(s)	50, 234, 303, 510
Fsp4HI	GCNGC	2 cut(s)	171, 299
FspBI	CTAG	5 cut(s)	51, 163, 201, 330, 336
GluI	GCNGC	2 cut(s)	171, 299
HaeIII	GGCC	2 cut(s)	525, 546
Hin1II	CATG	6 cut(s)	87, 110, 237, 433, 545, 557
HindIII	AAGCTT	2 cut(s)	321, 559
HinfI	GANTC	2 cut(s)	9, 456
HphI	GGTGA	5 cut(s)	45, 221, 365, 441, 501
Hpy188I	TCNGA	3 cut(s)	140, 268, 587
Hpy188III	TCNNGA	2 cut(s)	147, 336
Hpy99I	CGWCG	1 cut(s)	537
HpyAV	CCTTC	2 cut(s)	240, 273
HpyCH4V	TGCA	5 cut(s)	63, 294, 404, 464, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	558
HpyF3I	CTNAG	1 cut(s)	616
Hsp92II	CATG	6 cut(s)	87, 110, 237, 433, 545, 557
Kzo9I	GATC	2 cut(s)	280, 380
LguI	GCTCTTC	1 cut(s)	235
LpnPI	CCDG	8 cut(s)	55, 114, 160, 192, 424, 433, 479, 507
Lsp1109I	GCAGC	2 cut(s)	182, 310
LweI	GCATC	4 cut(s)	72, 140, 281, 310
MaeI	CTAG	5 cut(s)	51, 163, 201, 330, 336
MaeIII	GTNAC	2 cut(s)	353, 489
MalI	GATC	2 cut(s)	282, 382
MboI	GATC	2 cut(s)	280, 380
MboII	GAAGA	4 cut(s)	222, 224, 447, 579
MflI	RGATCY	2 cut(s)	280, 380
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	3 cut(s)	96, 175, 593
MluNI	TGGCCA	1 cut(s)	546
MlyI	GAGTC	2 cut(s)	3, 450
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	6 cut(s)	36, 208, 262, 262, 324, 506
Mox20I	TGGCCA	1 cut(s)	546
MroXI	GAANNNNTTC	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	552
Msp20I	TGGCCA	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	558
NcoI	CCATGG	1 cut(s)	553
NdeII	GATC	2 cut(s)	280, 380
NlaIII	CATG	6 cut(s)	87, 110, 237, 433, 545, 557
NlaIV	GGNNCC	2 cut(s)	382, 478
NmuCI	GTSAC	2 cut(s)	353, 489
NspI	RCATGY	2 cut(s)	110, 433
PaeI	GCATGC	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	172, 300
PleI	GAGTC	2 cut(s)	3, 450
PpsI	GAGTC	2 cut(s)	3, 450
PpuMI	RGGWCCY	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	382, 478
PspPI	GGNCC	1 cut(s)	249
PspPPI	RGGWCCY	1 cut(s)	249
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	280, 380
PvuII	CAGCTG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	235
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	2 cut(s)	171, 299
Sau3AI	GATC	2 cut(s)	280, 380
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	2 cut(s)	3, 450
SfaNI	GCATC	4 cut(s)	72, 140, 281, 310
SinI	GGWCC	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	552
SpeI	ACTAGT	1 cut(s)	162
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	3 cut(s)	96, 175, 593
SsiI	CCGC	1 cut(s)	390
SspMI	CTAG	5 cut(s)	51, 163, 201, 330, 336
StyI	CCWWGG	2 cut(s)	4, 553
TaqI	TCGA	1 cut(s)	532
TasI	AATT	3 cut(s)	96, 175, 593
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	3 cut(s)	74, 403, 604
TseFI	GTSAC	2 cut(s)	353, 489
TseI	GCWGC	2 cut(s)	170, 298
Tsp45I	GTSAC	2 cut(s)	353, 489
TspDTI	ATGAA	4 cut(s)	222, 238, 430, 514
TspGWI	ACGGA	2 cut(s)	373, 393
TspRI	CASTG	3 cut(s)	74, 403, 604
VpaK11BI	GGWCC	1 cut(s)	249
XagI	CCTNNNNNAGG	1 cut(s)	484
XapI	RAATTY	1 cut(s)	593
XbaI	TCTAGA	1 cut(s)	335
XceI	RCATGY	2 cut(s)	110, 433
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	5 cut(s)	51, 163, 201, 330, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.