Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002676

Physical Location & Seq

Genomic Coordinates Forward (+)

4327857 .. 4333850

Gene Structure 5994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G002380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCGAGAAGAATGGGGAGTCCGAGAAGAATTGATAAATGTTGTCACATAAAGTTGCATGATTGGGACAAATTAAAGAACATGTTATCCTTTCAGCTGAAGCAGATTCTGTCAGAGTATCCTGATGCAGAAAAGACTAGTGAGCAGCAAATTACTACTTTAGGAGAAACCTACCTAGAACTGGTGAAGAGGTTGGATGAAGCTCTTCATGGTTTTACCGAAGGTCCTCCATTTACCCTTCAGAGGCTTTATAAGTTCTTTGATAGTTGTGTTAAATTGTCTACATTAGCTACCTTTCTGAAACTGCTATCCCTGTCTCTCCTTTCATCTTTCTGCACCATTAGATGTAACATTCACACAATAGTTAACGCTGTCGACAGCCTGTCGACATGGATGCCGAGTTCTTCAGACGACGGTTCTCTAAATCATATTTCATCAGACGGCAGCGAGATATACGACAGTCAGCTCCGTATCAGACGACAGTTTTTAGCCGTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

166

Amino Acids

19.01

Weight (kDa)

7.67

Isoelectric Point (pI)

67.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17070 AT5G17070
fragaria_vesca	FvH4_7g33790 FvH4_7g33790 FvH4_7g33790 FvH4_7g33790
malus_domestica	MD01G1234200.v1.1 MD07G1306400.v1.1
prunus_persica	Prupe.2G324400_v2.0.a1 Prupe.2G324400_v2.0.a1
pyrus_communis	pycom01g24270 pycom07g27940
rosa_chinensis	RchiOBHm_Chr1g0383921
rosa_laevigata	RLG00000026086
rosa_multiflora	Rmu_co8486869.1_g000001 Rmu_sc0005139.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277150
rosa_rugosa	Rorug01G0443000
rosa_samantha	Rh1AG189200 Rh1AG469000 Rh1BG426700 Rh1CG439500 Rh1DG459500 Rh2AG256200 Rh2AG256300 Rh2AG293800 Rh2BG193800 Rh2CG261600 Rh2DG264600 Rh4DG441900 Rh5AG227200 Rh5AG268100 Rh5BG209000 Rh5BG286400 Rh6CG067100 Rh6DG064000 Rh7BG421000
rosa_wichuraiana	Rw1G002380 Rw1G040340 Rw5G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
AccI	GTMKAC	3 cut(s)	281, 375, 386
AcuI	CTGAAG	3 cut(s)	119, 224, 390
AfiI	CCNNNNNNNGG	2 cut(s)	181, 243
AflIII	ACRYGT	1 cut(s)	81
AhdI	GACNNNNNGTC	1 cut(s)	382
AhlI	ACTAGT	1 cut(s)	137
AloI	GAACNNNNNNTCC	4 cut(s)	71, 103, 385, 417
AluBI	AGCT	4 cut(s)	97, 203, 290, 466
AluI	AGCT	4 cut(s)	97, 203, 290, 466
Alw26I	GTCTC	1 cut(s)	321
AlwNI	CAGNNNCTG	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	145, 444
Asp700I	GAANNNNTTC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	224
BbvI	GCAGC	2 cut(s)	157, 456
BceAI	ACGGC	2 cut(s)	457, 476
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BciVI	GTATCC	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	321
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	2 cut(s)	138, 176
BfuI	GTATCC	1 cut(s)	129
BisI	GCNGC	2 cut(s)	146, 445
BlsI	GCNGC	2 cut(s)	147, 446
Bme18I	GGWCC	1 cut(s)	224
BmeRI	GACNNNNNGTC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	224
BmsI	GCATC	2 cut(s)	115, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 243
Bse1I	ACTGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	202, 399
BseLI	CCNNNNNNNGG	2 cut(s)	181, 243
BseNI	ACTGG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	157, 456
BsgI	GTGCAG	1 cut(s)	319
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	181, 243
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	80
BspQI	GCTCTTC	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	186
Bst4CI	ACNGT	3 cut(s)	416, 461, 483
Bst6I	CTCTTC	2 cut(s)	182, 210
BstF5I	GGATG	2 cut(s)	202, 399
BstMAI	GTCTC	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	157, 456
BsuI	GTATCC	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	202, 399
CaiI	CAGNNNCTG	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	224
CviAII	CATG	4 cut(s)	59, 82, 209, 390
CviJI	RGCY	7 cut(s)	97, 203, 247, 290, 381, 466, 491
CviKI_1	RGCY	7 cut(s)	97, 203, 247, 290, 381, 466, 491
DriI	GACNNNNNGTC	1 cut(s)	382
Eam1104I	CTCTTC	2 cut(s)	182, 210
Eam1105I	GACNNNNNGTC	1 cut(s)	382
EarI	CTCTTC	2 cut(s)	182, 210
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	3 cut(s)	119, 224, 390
EcoO109I	RGGNCCY	1 cut(s)	224
FaeI	CATG	4 cut(s)	62, 85, 212, 393
FaiI	YATR	8 cut(s)	50, 60, 83, 210, 252, 391, 429, 454
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	4 cut(s)	58, 81, 208, 389
FblI	GTMKAC	3 cut(s)	281, 375, 386
Fnu4HI	GCNGC	2 cut(s)	146, 445
FokI	GGATG	2 cut(s)	209, 406
Fsp4HI	GCNGC	2 cut(s)	146, 445
FspBI	CTAG	2 cut(s)	138, 176
GluI	GCNGC	2 cut(s)	146, 445
Hin1II	CATG	4 cut(s)	62, 85, 212, 393
HincII	GTYRAC	3 cut(s)	367, 376, 387
HindII	GTYRAC	3 cut(s)	367, 376, 387
HinfI	GANTC	2 cut(s)	19, 106
HpaI	GTTAAC	1 cut(s)	367
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	4 cut(s)	282, 367, 376, 387
Hpy188I	TCNGA	8 cut(s)	24, 115, 243, 300, 409, 439, 476, 500
Hpy188III	TCNNGA	2 cut(s)	6, 122
Hpy8I	GTNNAC	4 cut(s)	282, 367, 376, 387
Hpy99I	CGWCG	2 cut(s)	416, 497
HpyAV	CCTTC	2 cut(s)	215, 248
HpyCH4III	ACNGT	3 cut(s)	416, 461, 483
HpyCH4V	TGCA	3 cut(s)	58, 128, 336
Hsp92II	CATG	4 cut(s)	62, 85, 212, 393
KspAI	GTTAAC	1 cut(s)	367
LguI	GCTCTTC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	471
LpnPI	CCDG	4 cut(s)	135, 167, 326, 395
Lsp1109I	GCAGC	2 cut(s)	157, 456
LweI	GCATC	2 cut(s)	115, 384
MaeI	CTAG	2 cut(s)	138, 176
MaeIII	GTNAC	2 cut(s)	44, 347
MboII	GAAGA	5 cut(s)	21, 39, 197, 199, 396
MluCI	AATT	4 cut(s)	30, 71, 150, 275
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	3 cut(s)	183, 237, 237
MroXI	GAANNNNTTC	1 cut(s)	204
MseI	TTAA	3 cut(s)	74, 273, 366
MspA1I	CMGCKG	1 cut(s)	97
NlaIII	CATG	4 cut(s)	62, 85, 212, 393
NmeAIII	GCCGAG	1 cut(s)	423
NmuCI	GTSAC	1 cut(s)	44
NspI	RCATGY	1 cut(s)	85
PciI	ACATGT	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	147, 446
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PpuMI	RGGWCCY	1 cut(s)	224
PscI	ACATGT	1 cut(s)	81
PsiI	TTATAA	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	224
PspPPI	RGGWCCY	1 cut(s)	224
PstNI	CAGNNNCTG	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	97
SalI	GTCGAC	2 cut(s)	374, 385
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	3 cut(s)	74, 273, 366
SatI	GCNGC	2 cut(s)	146, 445
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	28
SetI	ASST	9 cut(s)	99, 173, 177, 194, 205, 226, 292, 296, 468
SfaNI	GCATC	2 cut(s)	115, 384
SinI	GGWCC	1 cut(s)	224
SpeI	ACTAGT	1 cut(s)	137
Sse9I	AATT	4 cut(s)	30, 71, 150, 275
SspMI	CTAG	2 cut(s)	138, 176
TaaI	ACNGT	3 cut(s)	416, 461, 483
TaqI	TCGA	3 cut(s)	5, 375, 386
TasI	AATT	4 cut(s)	30, 71, 150, 275
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	3 cut(s)	74, 273, 366
Tru9I	TTAA	3 cut(s)	74, 273, 366
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	2 cut(s)	145, 444
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	4 cut(s)	197, 213, 315, 423
TspGWI	ACGGA	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	224
XceI	RCATGY	1 cut(s)	85
XmiI	GTMKAC	3 cut(s)	281, 375, 386
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	2 cut(s)	138, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.