Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002676

Physical Location & Seq

Genomic Coordinates Forward (+)

30016960 .. 30020479

Gene Structure 3520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G324400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGATGCCATCAAATGAGAATTCACAGCCCTTAATGAATTCTACCAGTGATGCTGATAATCAACATGAGACTATTGTTCCTGATGGTTTAAATAATGCATATAAGGAGTCCAAGCATGAGGTTGCTGAAGAAGAAGTTAGAGGCATACTAGCAGTTATTGCATCCACCGGAAAATTTTGGCATGATTGGGACAAATTAAAAAGCATGCTATCCTTTCAGCTGAAGCAGGTTCTGTCGGAGTATCCTGAGGGAAAAATGGCAGATGAGCAGCAAATTGCTTCTTTAGGAGAAACGTACCCAGAACTGGTGAAGAGGTTGGATGAAGCTCTTAATAGTTTTACCGAAGGTCCTCCATTTACGCTTCAGAGGCTTTGCGAGATCCTTTTGGATGCACAAACCACCTATCCAAATCTCTCAAAGCTTGCTTTTGCACTAGAAAAGAATCTATTGGTGACAACTATGCTGACCGTCTCAACTGATCCATATCCACAACCCATGGTGCAAAATTCAGCTGAACCAAAGCAAGCAACTGAAGAACCTAAACTTCACTCAGATTCAGTGCAGAATGGGGTGGAATCTATGGTAGGTGATAGGGATGAAGTTATGGCAGAGGTAGAACAAGCTGATATTGATGATGATATGACCATTGCCATAGAAGCTTTTGAAGATATAGTTGGATCATCAGAAACAAATTCAGTGCAGACCAATAATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

240

Amino Acids

26.57

Weight (kDa)

4.22

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17070 AT5G17070
fragaria_vesca	FvH4_7g33790 FvH4_7g33790 FvH4_7g33790 FvH4_7g33790
malus_domestica	MD01G1234200.v1.1 MD07G1306400.v1.1
prunus_persica	Prupe.2G324400_v2.0.a1 Prupe.2G324400_v2.0.a1
pyrus_communis	pycom01g24270 pycom07g27940
rosa_chinensis	RchiOBHm_Chr1g0383921
rosa_laevigata	RLG00000026086
rosa_multiflora	Rmu_co8486869.1_g000001 Rmu_sc0005139.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277150
rosa_rugosa	Rorug01G0443000
rosa_samantha	Rh1AG189200 Rh1AG469000 Rh1BG426700 Rh1CG439500 Rh1DG459500 Rh2AG256200 Rh2AG256300 Rh2AG293800 Rh2BG193800 Rh2CG261600 Rh2DG264600 Rh4DG441900 Rh5AG227200 Rh5AG268100 Rh5BG209000 Rh5BG286400 Rh6CG067100 Rh6DG064000 Rh7BG421000
rosa_wichuraiana	Rw1G002380 Rw1G040340 Rw5G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
AclWI	GGATC	3 cut(s)	376, 476, 688
AcsI	RAATTY	5 cut(s)	22, 40, 176, 508, 694
AcuI	CTGAAG	4 cut(s)	150, 245, 350, 555
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgsI	TTSAA	1 cut(s)	668
AjuI	GAANNNNNNNTTGG	2 cut(s)	660, 692
AluBI	AGCT	6 cut(s)	223, 329, 424, 515, 626, 662
AluI	AGCT	6 cut(s)	223, 329, 424, 515, 626, 662
Alw26I	GTCTC	2 cut(s)	65, 478
AlwI	GGATC	3 cut(s)	376, 476, 688
AlwNI	CAGNNNCTG	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	5 cut(s)	22, 40, 176, 508, 694
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	3 cut(s)	322, 466, 602
AvaII	GGWCC	1 cut(s)	350
AxyI	CCTNAGG	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	2 cut(s)	19, 80
BciVI	GTATCC	1 cut(s)	255
BcoDI	GTCTC	2 cut(s)	65, 478
BfaI	CTAG	2 cut(s)	152, 437
BfuAI	ACCTGC	1 cut(s)	220
BfuI	GTATCC	1 cut(s)	255
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmsI	GCATC	3 cut(s)	43, 173, 382
BsaBI	GATNNNNATC	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	498
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse1I	ACTGG	2 cut(s)	48, 312
Bse21I	CCTNAGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	648
Bse8I	GATNNNNATC	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	4 cut(s)	164, 328, 397, 604
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	2 cut(s)	240, 567
BseNI	ACTGG	2 cut(s)	48, 312
BseXI	GCAGC	1 cut(s)	283
BsgI	GTGCAG	1 cut(s)	584
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	2 cut(s)	65, 478
BsmBI	CGTCTC	1 cut(s)	478
BsmFI	GGGAC	1 cut(s)	206
Bsp143I	GATC	3 cut(s)	381, 481, 680
Bsp19I	CCATGG	1 cut(s)	498
BspCNI	CTCAG	2 cut(s)	241, 566
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	3 cut(s)	376, 476, 688
BsrDI	GCAATG	1 cut(s)	648
BsrI	ACTGG	2 cut(s)	48, 312
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	3 cut(s)	381, 481, 680
BssT1I	CCWWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	1 cut(s)	308
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	3 cut(s)	209, 426, 528
BstDEI	CTNAG	3 cut(s)	249, 553, 717
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	4 cut(s)	164, 328, 397, 604
BstKTI	GATC	3 cut(s)	384, 484, 683
BstMAI	GTCTC	2 cut(s)	65, 478
BstMBI	GATC	3 cut(s)	381, 481, 680
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 370, 659
BstNSI	RCATGY	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
Bsu36I	CCTNAGG	1 cut(s)	249
BsuI	GTATCC	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	498
BtsCI	GGATG	4 cut(s)	164, 328, 397, 604
BtsIMutI	CAGTG	3 cut(s)	55, 567, 705
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	3 cut(s)	209, 426, 528
CaiI	CAGNNNCTG	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	5 cut(s)	68, 119, 185, 208, 499
CviJI	RGCY	8 cut(s)	31, 223, 329, 373, 424, 515, 626, 662
CviKI_1	RGCY	8 cut(s)	31, 223, 329, 373, 424, 515, 626, 662
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	3 cut(s)	249, 553, 717
DpnI	GATC	3 cut(s)	383, 483, 682
DpnII	GATC	3 cut(s)	381, 481, 680
DraI	TTTAAA	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	4 cut(s)	150, 245, 350, 555
Eco81I	CCTNAGG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRI	GAATTC	2 cut(s)	22, 40
EcoT14I	CCWWGG	1 cut(s)	498
EcoT22I	ATGCAT	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	498
Esp3I	CGTCTC	1 cut(s)	478
FaeI	CATG	5 cut(s)	71, 122, 188, 211, 502
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	5 cut(s)	67, 118, 184, 207, 498
Fnu4HI	GCNGC	1 cut(s)	272
FokI	GGATG	4 cut(s)	151, 335, 404, 611
Fsp4HI	GCNGC	1 cut(s)	272
FspBI	CTAG	2 cut(s)	152, 437
GluI	GCNGC	1 cut(s)	272
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	5 cut(s)	71, 122, 188, 211, 502
HindIII	AAGCTT	2 cut(s)	422, 660
HinfI	GANTC	4 cut(s)	110, 445, 557, 578
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	3 cut(s)	322, 466, 602
Hpy188I	TCNGA	4 cut(s)	241, 369, 556, 688
Hpy188III	TCNNGA	2 cut(s)	83, 248
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	7 cut(s)	101, 164, 395, 434, 505, 565, 703
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 370, 659
HpyF3I	CTNAG	3 cut(s)	249, 553, 717
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	5 cut(s)	71, 122, 188, 211, 502
Kzo9I	GATC	3 cut(s)	381, 481, 680
LpnPI	CCDG	7 cut(s)	61, 96, 184, 215, 261, 293, 315
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	3 cut(s)	43, 173, 382
MaeI	CTAG	2 cut(s)	152, 437
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	3 cut(s)	383, 483, 682
MboI	GATC	3 cut(s)	381, 481, 680
MboII	GAAGA	5 cut(s)	143, 146, 325, 548, 680
MflI	RGATCY	1 cut(s)	381
MluCI	AATT	8 cut(s)	22, 40, 176, 197, 276, 508, 694, 712
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	3 cut(s)	219, 300, 658
MnlI	CCTC	7 cut(s)	115, 137, 244, 309, 363, 363, 607
Mph1103I	ATGCAT	1 cut(s)	103
MseI	TTAA	4 cut(s)	35, 92, 200, 333
MspA1I	CMGCKG	2 cut(s)	223, 515
MspI	CCGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	161, 370, 659
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	3 cut(s)	381, 481, 680
NlaIII	CATG	5 cut(s)	71, 122, 188, 211, 502
NmuCI	GTSAC	1 cut(s)	454
NsiI	ATGCAT	1 cut(s)	103
NspI	RCATGY	1 cut(s)	211
PaeI	GCATGC	1 cut(s)	211
PfeI	GAWTC	3 cut(s)	445, 557, 578
PkrI	GCNGC	1 cut(s)	273
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	350
PspPI	GGNCC	1 cut(s)	350
PspPPI	RGGWCCY	1 cut(s)	350
PstNI	CAGNNNCTG	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	381
PvuII	CAGCTG	2 cut(s)	223, 515
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	4 cut(s)	35, 92, 200, 333
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	3 cut(s)	381, 481, 680
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	119
SfaNI	GCATC	3 cut(s)	43, 173, 382
SinI	GGWCC	1 cut(s)	350
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	8 cut(s)	22, 40, 176, 197, 276, 508, 694, 712
SspMI	CTAG	2 cut(s)	152, 437
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	1 cut(s)	472
TaiI	ACGT	1 cut(s)	299
TasI	AATT	8 cut(s)	22, 40, 176, 197, 276, 508, 694, 712
TfiI	GAWTC	3 cut(s)	445, 557, 578
Tru1I	TTAA	4 cut(s)	35, 92, 200, 333
Tru9I	TTAA	4 cut(s)	35, 92, 200, 333
TscAI	CASTG	3 cut(s)	55, 567, 705
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	3 cut(s)	53, 339, 615
TspRI	CASTG	3 cut(s)	55, 567, 705
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	5 cut(s)	22, 40, 176, 508, 694
XceI	RCATGY	1 cut(s)	211
XspI	CTAG	2 cut(s)	152, 437
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.