Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002676

Physical Location & Seq

Genomic Coordinates Forward (+)

38332883 .. 38336755

Gene Structure 3873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G026480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAAGTACCATATGGAGAAACAGAATCCAAGGAGTCGAAGCACGAGATTGCTGATGGTGAAGTTAGAGGCATACTAAAAGTGATTGCATCCACTGGGAGATTTTGGCATGATTGGGACAAATCAAAGAGCATGCTATCCTTTCAGCTGAAGCAAGTTCTGTCAGAGTATCCTGATGCAGAAAAGACTATTGAGCAGCAAAATACTACTTTAGGAGAAACCAACCTAGAACTGGCCGCTCTTCATGGTTTTACCGAAGGTCCTCCGTTTACCCTTCAGAGATATAATTTTTGTTTTGAATTTTTTGTCAAGCAGATCCTATTGGATGCGCGCAGCATCTACCCGAATCTCTCAAAGCTTGCTCTAGCTATAGAAAAGAACAGCCTATTGGTGACATCTATGCTGACTATCTCAATGGATGCTGACTATATATCTCAATGGATCCATGAATCAGAAAAAGTAAGTGGAGAACCTAAACTTCACTCTGACGCAAGTGGGGTGGAACCTATGGTAGGTGACAGGGATGAAGTAATGGTAGAGGTTGAGCAGGCTGATATTGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

188

Amino Acids

21.27

Weight (kDa)

4.62

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17070 AT5G17070
fragaria_vesca	FvH4_7g33790 FvH4_7g33790 FvH4_7g33790 FvH4_7g33790
malus_domestica	MD01G1234200.v1.1 MD07G1306400.v1.1
prunus_persica	Prupe.2G324400_v2.0.a1 Prupe.2G324400_v2.0.a1
pyrus_communis	pycom01g24270 pycom07g27940
rosa_chinensis	RchiOBHm_Chr1g0383921
rosa_laevigata	RLG00000026086
rosa_multiflora	Rmu_co8486869.1_g000001 Rmu_sc0005139.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277150
rosa_rugosa	Rorug01G0443000
rosa_samantha	Rh1AG189200 Rh1AG469000 Rh1BG426700 Rh1CG439500 Rh1DG459500 Rh2AG256200 Rh2AG256300 Rh2AG293800 Rh2BG193800 Rh2CG261600 Rh2DG264600 Rh4DG441900 Rh5AG227200 Rh5AG268100 Rh5BG209000 Rh5BG286400 Rh6CG067100 Rh6DG064000 Rh7BG421000
rosa_wichuraiana	Rw1G002380 Rw1G040340 Rw5G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	239
AccII	CGCG	1 cut(s)	331
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	3 cut(s)	310, 436, 449
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	2 cut(s)	170, 260
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	232, 512
AgsI	TTSAA	2 cut(s)	299, 560
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	3 cut(s)	148, 358, 368
AluI	AGCT	3 cut(s)	148, 358, 368
AlwI	GGATC	3 cut(s)	310, 436, 449
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	2 cut(s)	196, 333
ApoI	RAATTY	1 cut(s)	299
AspLEI	GCGC	2 cut(s)	331, 333
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	3 cut(s)	71, 403, 527
AvaII	GGWCC	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	441
BauI	CACGAG	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	208, 345
BccI	CCATC	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	180
BfaI	CTAG	2 cut(s)	227, 365
BfmI	CTRYAG	1 cut(s)	369
BfuI	GTATCC	1 cut(s)	180
BisI	GCNGC	3 cut(s)	197, 237, 334
BlsI	GCNGC	3 cut(s)	198, 238, 335
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	2 cut(s)	443, 504
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	5 cut(s)	98, 166, 316, 345, 409
BmuI	ACTGGG	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 512
Bse1I	ACTGG	2 cut(s)	100, 237
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	4 cut(s)	89, 331, 424, 529
BseLI	CCNNNNNNNGG	2 cut(s)	232, 512
BseNI	ACTGG	2 cut(s)	100, 237
BsePI	GCGCGC	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	208, 345
Bsh1236I	CGCG	1 cut(s)	331
BshFI	GGCC	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	232, 512
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	315, 441
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	1 cut(s)	236
BspFNI	CGCG	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	443, 504
BspPI	GGATC	3 cut(s)	310, 436, 449
BspQI	GCTCTTC	1 cut(s)	246
BsrBI	CCGCTC	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	100, 237
BssECI	CCNNGG	1 cut(s)	30
BssHII	GCGCGC	1 cut(s)	329
BssMI	GATC	2 cut(s)	315, 441
BssSI	CACGAG	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	4 cut(s)	134, 331, 360, 549
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstF5I	GGATG	4 cut(s)	89, 331, 424, 529
BstFNI	CGCG	1 cut(s)	331
BstHHI	GCGC	2 cut(s)	331, 333
BstKTI	GATC	2 cut(s)	318, 444
BstMBI	GATC	2 cut(s)	315, 441
BstNSI	RCATGY	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	369
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	208, 345
BstX2I	RGATCY	2 cut(s)	315, 441
BstYI	RGATCY	2 cut(s)	315, 441
BsuI	GTATCC	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	236
BtsCI	GGATG	4 cut(s)	89, 331, 424, 529
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	4 cut(s)	134, 331, 360, 549
CfoI	GCGC	2 cut(s)	331, 333
Cfr13I	GGNCC	1 cut(s)	260
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	8
CspCI	CAANNNNNGTGG	2 cut(s)	480, 515
CviAII	CATG	4 cut(s)	110, 133, 245, 446
CviJI	RGCY	6 cut(s)	148, 236, 358, 368, 384, 551
CviKI_1	RGCY	6 cut(s)	148, 236, 358, 368, 384, 551
CviQI	GTAC	1 cut(s)	8
DpnI	GATC	2 cut(s)	317, 443
DpnII	GATC	2 cut(s)	315, 441
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	2 cut(s)	170, 260
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	4 cut(s)	113, 136, 248, 449
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	4 cut(s)	109, 132, 244, 445
FauNDI	CATATG	1 cut(s)	13
Fnu4HI	GCNGC	3 cut(s)	197, 237, 334
FokI	GGATG	4 cut(s)	76, 338, 431, 536
Fsp4HI	GCNGC	3 cut(s)	197, 237, 334
FspBI	CTAG	2 cut(s)	227, 365
GlaI	GCGC	2 cut(s)	330, 332
GluI	GCNGC	3 cut(s)	197, 237, 334
HaeIII	GGCC	1 cut(s)	236
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	2 cut(s)	331, 333
Hin1II	CATG	4 cut(s)	113, 136, 248, 449
Hin6I	GCGC	2 cut(s)	329, 331
HinP1I	GCGC	2 cut(s)	329, 331
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	4 cut(s)	26, 35, 346, 449
HphI	GGTGA	3 cut(s)	71, 403, 527
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	4 cut(s)	166, 279, 454, 487
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	270
HpyAV	CCTTC	2 cut(s)	251, 284
HpyCH4V	TGCA	2 cut(s)	89, 179
Hsp92II	CATG	4 cut(s)	113, 136, 248, 449
HspAI	GCGC	2 cut(s)	329, 331
Kzo9I	GATC	2 cut(s)	315, 441
LguI	GCTCTTC	1 cut(s)	246
LpnPI	CCDG	5 cut(s)	81, 186, 218, 505, 533
Lsp1109I	GCAGC	2 cut(s)	208, 345
LweI	GCATC	5 cut(s)	98, 166, 316, 345, 409
MaeI	CTAG	2 cut(s)	227, 365
MaeIII	GTNAC	2 cut(s)	391, 515
MalI	GATC	2 cut(s)	317, 443
MbiI	CCGCTC	1 cut(s)	239
MboI	GATC	2 cut(s)	315, 441
MboII	GAAGA	1 cut(s)	233
MflI	RGATCY	2 cut(s)	315, 441
MluCI	AATT	2 cut(s)	286, 299
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	3 cut(s)	62, 273, 532
MspA1I	CMGCKG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	331
NdeI	CATATG	1 cut(s)	13
NdeII	GATC	2 cut(s)	315, 441
NlaIII	CATG	4 cut(s)	113, 136, 248, 449
NlaIV	GGNNCC	2 cut(s)	443, 504
NmuCI	GTSAC	2 cut(s)	391, 515
NspI	RCATGY	1 cut(s)	136
PaeI	GCATGC	1 cut(s)	136
PauI	GCGCGC	1 cut(s)	329
PciSI	GCTCTTC	1 cut(s)	246
PfeI	GAWTC	3 cut(s)	26, 346, 449
PkrI	GCNGC	3 cut(s)	198, 238, 335
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PpuMI	RGGWCCY	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	443, 504
PspPI	GGNCC	1 cut(s)	260
PspPPI	RGGWCCY	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	315, 441
PteI	GCGCGC	1 cut(s)	329
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	246
SatI	GCNGC	3 cut(s)	197, 237, 334
Sau3AI	GATC	2 cut(s)	315, 441
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	44
SetI	ASST	9 cut(s)	150, 228, 262, 360, 370, 475, 508, 517, 543
SfaNI	GCATC	5 cut(s)	98, 166, 316, 345, 409
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	260
SphI	GCATGC	1 cut(s)	136
Sse9I	AATT	2 cut(s)	286, 299
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	2 cut(s)	227, 365
StyI	CCWWGG	1 cut(s)	30
TaqI	TCGA	1 cut(s)	38
TasI	AATT	2 cut(s)	286, 299
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	3 cut(s)	26, 346, 449
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	2 cut(s)	391, 515
TseI	GCWGC	2 cut(s)	196, 333
Tsp45I	GTSAC	2 cut(s)	391, 515
TspDTI	ATGAA	3 cut(s)	233, 462, 540
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	260
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	1 cut(s)	136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XspI	CTAG	2 cut(s)	227, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.