Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001884

Physical Location & Seq

Genomic Coordinates Reverse (-)

7443460 .. 7445639

Gene Structure 2180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G22460.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGATGTTTTCGGTGACGGTTGCGATCCTTGTTTGTCTTATTGGCTACATTTACCGATCATTTAAGCCTCCACCACCGCGAATCTGCGGCCATCCTAACGGTCCTCCGGTTACTTCTCCGAGAATCAAGCTCAGTGATGGAAGATATCTTGCTTATAGAGAATCTGGGGTTGATAGAGACAATGCTAACTACAAGATCATTGTCGTTCATGGCTTCAACAGCTCCAAAGACACTGAATTTCCCATCCCTAAGGATGTAATTGAGGAGCTTGGGATATACTTTGTGTTCTACGATAGAGCAGGATATGGAGAAAGTGATCCACACCCATCACGCACTGTTAAGAGTGAAGCATACGACATTCAAGAACTCGCCGATAAACTCAAGATCGGACCAAAGTTCTATGTTCTTGGTATATCACTAGGTGCTTACTCGGTTTATAGTTGCCTCAAATACATTCCCCACAGACTAGCTGGAGCAGTCTTAATGGTTCCATTTGTGAACTATTGGTGGACTAAAGTGCCTCAAGAAAAATTGAGTAAAGCGTTGGAGCTAATGCCAAAGAAAGACCAATGGACGTTTAAAGTGGCTCATTATGTTCCGTGGTTGTTATATTGGTGGTTGACCCAAAAACTATTTCCGTCTTCGAGTATGGTCACGGGGAACAATGCGTTATGCAGCGACAAAGATTTGGTCGTCATAAAGAAGAAAATGGAGAATCCACGCCCTGGCTTGGAAAAAGTTAGACAACAAGGAGACCATGAATGTCTTCACCGGGACATGATAGCCGGATTCGCGACATGGGAATTCGACCCGACTGAATTAGAAAATCCGTTTGCGGAAGGCGAAGGATCGGTCCACGTTTGGCAAGGGATGGAAGACAGAATCATTCCATACGAAATTAATCGATATATATCAGAGAAGCTTCCATGGATTAAGTACCATGAGGTCTTAGGTTATGGACATCTTCTAAACGCCGAGGAGGAGAAATGCAAAGACATTATCAAGGCACTTCTTGTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

340

Amino Acids

39.1

Weight (kDa)

7.13

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	64 - 184	5.9e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	66 - 172	2.9e-07	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	66 - 325	8.2e-09	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22460 AT5G22460 AT5G22460
fragaria_vesca	FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_7g05600
malus_domestica	MD07G1064300.v1.1 MD07G1064500.v1.1 MD11G1163800.v1.1
prunus_persica	Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1
pyrus_communis	pycom03g09790
rosa_chinensis	RchiOBHm_Chr5g0044301 RchiOBHm_Chr5g0044321 RchiOBHm_Chr5g0044331
rosa_laevigata	RLG00000034264 RLG00000034265
rosa_multiflora	Rmu_co8240737.1_g000001 Rmu_co8478079.1_g000001 Rmu_sc0002307.1_g000004 Rmu_sc0004741.1_g000022 Rmu_sc0015666.1_g000005 Rmu_sc0016943.1_g000002 Rmu_sc0039604.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036650 Rroxscaffold_1G00036660 Rroxscaffold_4G00311410 Rroxscaffold_7G00192630
rosa_rugosa	Rorug05G0212900 Rorug05G0213000 Rorug05G0213100
rosa_samantha	Rh3CG234200 Rh5AG297600 Rh5BG304900 Rh5BG305000 Rh5CG331800 Rh5CG331900 Rh5DG314100 Rh5DG314200
rosa_wichuraiana	Rw5G027540 Rw5G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	725
AccII	CGCG	2 cut(s)	79, 794
AciI	CCGC	3 cut(s)	77, 87, 836
AclWI	GGATC	3 cut(s)	19, 311, 856
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	2 cut(s)	236, 803
AdeI	CACNNNGTG	1 cut(s)	422
AfaI	GTAC	1 cut(s)	938
AfiI	CCNNNNNNNGG	2 cut(s)	725, 730
AgsI	TTSAA	2 cut(s)	217, 362
AjnI	CCWGG	1 cut(s)	724
AjuI	GAANNNNNNNTTGG	2 cut(s)	618, 650
AluBI	AGCT	6 cut(s)	130, 222, 268, 470, 550, 922
AluI	AGCT	6 cut(s)	130, 222, 268, 470, 550, 922
Alw26I	GTCTC	2 cut(s)	171, 747
AlwI	GGATC	3 cut(s)	19, 311, 856
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	675
ApoI	RAATTY	2 cut(s)	236, 803
ArsI	GACNNNNNNTTYG	4 cut(s)	675, 707, 837, 869
AseI	ATTAAT	1 cut(s)	900
Asp700I	GAANNNNTTC	1 cut(s)	765
AspS9I	GGNCC	3 cut(s)	101, 389, 853
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	2 cut(s)	25, 761
AvaII	GGWCC	3 cut(s)	101, 389, 853
AxyI	CCTNAGG	1 cut(s)	249
BbsI	GAAGAC	3 cut(s)	633, 758, 882
BbvI	GCAGC	1 cut(s)	687
BccI	CCATC	5 cut(s)	99, 131, 251, 334, 865
BciT130I	CCWGG	1 cut(s)	726
BcnI	CCSGG	1 cut(s)	773
BcoDI	GTCTC	2 cut(s)	171, 747
BfaI	CTAG	2 cut(s)	419, 467
BisI	GCNGC	2 cut(s)	88, 676
BlsI	GCNGC	2 cut(s)	89, 677
Bme1390I	CCNGG	2 cut(s)	726, 773
Bme18I	GGWCC	3 cut(s)	101, 389, 853
BmgT120I	GGNCC	3 cut(s)	101, 389, 853
BmiI	GGNNCC	1 cut(s)	489
BmrFI	CCNGG	2 cut(s)	726, 773
BpiI	GAAGAC	3 cut(s)	633, 758, 882
BpmI	CTGGAG	1 cut(s)	492
BpuEI	CTTGAG	2 cut(s)	365, 507
BpuMI	CCSGG	1 cut(s)	773
Bsa29I	ATCGAT	1 cut(s)	904
BsaBI	GATNNNNATC	1 cut(s)	910
BsaI	GGTCTC	1 cut(s)	747
BsaJI	CCNNGG	4 cut(s)	599, 724, 926, 975
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	725, 730
Bse21I	CCTNAGG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	910
BseBI	CCWGG	1 cut(s)	726
BseCI	ATCGAT	1 cut(s)	904
BseDI	CCNNGG	4 cut(s)	599, 724, 926, 975
BseGI	GGATG	4 cut(s)	91, 243, 259, 876
BseJI	GATNNNNATC	1 cut(s)	910
BseLI	CCNNNNNNNGG	2 cut(s)	725, 730
BseMII	CTCAG	1 cut(s)	145
BseRI	GAGGAG	3 cut(s)	278, 992, 995
BseXI	GCAGC	1 cut(s)	687
Bsh1236I	CGCG	2 cut(s)	79, 794
BshFI	GGCC	1 cut(s)	90
BshVI	ATCGAT	1 cut(s)	904
BsiSI	CCGG	3 cut(s)	107, 772, 786
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	2 cut(s)	725, 730
BsmAI	GTCTC	2 cut(s)	171, 747
BsmFI	GGGAC	1 cut(s)	788
BsnI	GGCC	1 cut(s)	90
Bso31I	GGTCTC	1 cut(s)	747
Bsp143I	GATC	6 cut(s)	24, 56, 195, 316, 384, 848
Bsp19I	CCATGG	1 cut(s)	926
Bsp68I	TCGCGA	1 cut(s)	794
BspACI	CCGC	3 cut(s)	77, 87, 836
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	144
BspDI	ATCGAT	1 cut(s)	904
BspFNI	CGCG	2 cut(s)	79, 794
BspLI	GGNNCC	1 cut(s)	489
BspPI	GGATC	3 cut(s)	19, 311, 856
BspTNI	GGTCTC	1 cut(s)	747
BssECI	CCNNGG	4 cut(s)	599, 724, 926, 975
BssMI	GATC	6 cut(s)	24, 56, 195, 316, 384, 848
BssT1I	CCWWGG	1 cut(s)	926
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	3 cut(s)	19, 101, 337
BstDEI	CTNAG	3 cut(s)	131, 249, 949
BstDSI	CCRYGG	2 cut(s)	599, 926
BstF5I	GGATG	4 cut(s)	91, 243, 259, 876
BstFNI	CGCG	2 cut(s)	79, 794
BstKTI	GATC	6 cut(s)	27, 59, 198, 319, 387, 851
BstMAI	GTCTC	2 cut(s)	171, 747
BstMBI	GATC	6 cut(s)	24, 56, 195, 316, 384, 848
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 791
BstNI	CCWGG	1 cut(s)	726
BstSCI	CCNGG	2 cut(s)	724, 771
BstUI	CGCG	2 cut(s)	79, 794
BstV1I	GCAGC	1 cut(s)	687
BstV2I	GAAGAC	3 cut(s)	633, 758, 882
Bsu15I	ATCGAT	1 cut(s)	904
Bsu36I	CCTNAGG	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	90
BsuTUI	ATCGAT	1 cut(s)	904
BtgI	CCRYGG	2 cut(s)	599, 926
BtsCI	GGATG	4 cut(s)	91, 243, 259, 876
BtsIMutI	CAGTG	3 cut(s)	139, 231, 333
BtuMI	TCGCGA	1 cut(s)	794
Cfr13I	GGNCC	3 cut(s)	101, 389, 853
ClaI	ATCGAT	1 cut(s)	904
Csp6I	GTAC	1 cut(s)	937
CviAII	CATG	6 cut(s)	209, 758, 778, 798, 927, 941
CviQI	GTAC	1 cut(s)	937
DdeI	CTNAG	3 cut(s)	131, 249, 949
DpnI	GATC	6 cut(s)	26, 58, 197, 318, 386, 850
DpnII	GATC	6 cut(s)	24, 56, 195, 316, 384, 848
DraI	TTTAAA	1 cut(s)	580
DraIII	CACNNNGTG	1 cut(s)	422
EaeI	YGGCCR	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	926
Eco31I	GGTCTC	1 cut(s)	747
Eco32I	GATATC	1 cut(s)	146
Eco47I	GGWCC	3 cut(s)	101, 389, 853
Eco81I	CCTNAGG	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	803
EcoRII	CCWGG	1 cut(s)	724
EcoRV	GATATC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	926
ErhI	CCWWGG	1 cut(s)	926
FaeI	CATG	6 cut(s)	212, 761, 781, 801, 930, 944
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	6 cut(s)	208, 757, 777, 797, 926, 940
Fnu4HI	GCNGC	2 cut(s)	88, 676
FokI	GGATG	4 cut(s)	78, 230, 266, 883
Fsp4HI	GCNGC	2 cut(s)	88, 676
FspBI	CTAG	2 cut(s)	419, 467
GluI	GCNGC	2 cut(s)	88, 676
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	3 cut(s)	107, 772, 786
Hin1II	CATG	6 cut(s)	212, 761, 781, 801, 930, 944
HincII	GTYRAC	2 cut(s)	621, 1018
HindII	GTYRAC	2 cut(s)	621, 1018
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	6 cut(s)	81, 123, 161, 715, 789, 882
HpaII	CCGG	3 cut(s)	107, 772, 786
HphI	GGTGA	2 cut(s)	25, 761
Hpy166II	GTNNAC	5 cut(s)	499, 510, 621, 856, 1018
Hpy188I	TCNGA	3 cut(s)	120, 389, 916
Hpy188III	TCNNGA	4 cut(s)	362, 382, 524, 793
Hpy8I	GTNNAC	5 cut(s)	499, 510, 621, 856, 1018
HpyAV	CCTTC	2 cut(s)	833, 839
HpyCH4III	ACNGT	3 cut(s)	19, 101, 337
HpyCH4IV	ACGT	2 cut(s)	575, 858
HpyCH4V	TGCA	2 cut(s)	675, 990
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 791
HpyF3I	CTNAG	3 cut(s)	131, 249, 949
HpySE526I	ACGT	2 cut(s)	575, 858
Hsp92II	CATG	6 cut(s)	212, 761, 781, 801, 930, 944
Kzo9I	GATC	6 cut(s)	24, 56, 195, 316, 384, 848
LmnI	GCTCC	4 cut(s)	227, 265, 473, 547
LpnPI	CCDG	8 cut(s)	120, 150, 285, 456, 711, 738, 785, 799
Lsp1109I	GCAGC	1 cut(s)	687
MaeI	CTAG	2 cut(s)	419, 467
MaeII	ACGT	2 cut(s)	575, 858
MaeIII	GTNAC	3 cut(s)	13, 109, 652
MalI	GATC	6 cut(s)	26, 58, 197, 318, 386, 850
MboI	GATC	6 cut(s)	24, 56, 195, 316, 384, 848
MboII	GAAGA	6 cut(s)	153, 633, 715, 758, 887, 956
MluCI	AATT	6 cut(s)	236, 258, 530, 803, 818, 897
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	8 cut(s)	78, 114, 256, 455, 531, 937, 970, 973
MroXI	GAANNNNTTC	1 cut(s)	765
MseI	TTAA	6 cut(s)	63, 339, 482, 579, 900, 933
MspI	CCGG	3 cut(s)	107, 772, 786
MspR9I	CCNGG	2 cut(s)	726, 773
MvaI	CCWGG	1 cut(s)	726
MvnI	CGCG	2 cut(s)	79, 794
MwoI	GCNNNNNNNGC	2 cut(s)	219, 791
NciI	CCSGG	1 cut(s)	773
NcoI	CCATGG	1 cut(s)	926
NdeII	GATC	6 cut(s)	24, 56, 195, 316, 384, 848
NlaIII	CATG	6 cut(s)	212, 761, 781, 801, 930, 944
NlaIV	GGNNCC	1 cut(s)	489
NmeAIII	GCCGAG	1 cut(s)	1000
NmuCI	GTSAC	2 cut(s)	13, 652
NruI	TCGCGA	1 cut(s)	794
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	6 cut(s)	81, 123, 161, 715, 789, 882
PflMI	CCANNNNNTGG	1 cut(s)	725
PkrI	GCNGC	2 cut(s)	89, 677
PshBI	ATTAAT	1 cut(s)	900
Psp6I	CCWGG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	1 cut(s)	489
PspPI	GGNCC	3 cut(s)	101, 389, 853
RruI	TCGCGA	1 cut(s)	794
RsaI	GTAC	1 cut(s)	938
RsaNI	GTAC	1 cut(s)	937
SaqAI	TTAA	6 cut(s)	63, 339, 482, 579, 900, 933
SatI	GCNGC	2 cut(s)	88, 676
Sau3AI	GATC	6 cut(s)	24, 56, 195, 316, 384, 848
Sau96I	GGNCC	3 cut(s)	101, 389, 853
ScrFI	CCNGG	2 cut(s)	726, 773
SinI	GGWCC	3 cut(s)	101, 389, 853
SmlI	CTYRAG	2 cut(s)	380, 522
SmoI	CTYRAG	2 cut(s)	380, 522
Sse9I	AATT	6 cut(s)	236, 258, 530, 803, 818, 897
SsiI	CCGC	3 cut(s)	77, 87, 836
SspMI	CTAG	2 cut(s)	419, 467
StyD4I	CCNGG	2 cut(s)	724, 771
StyI	CCWWGG	1 cut(s)	926
TaaI	ACNGT	3 cut(s)	19, 101, 337
TaiI	ACGT	2 cut(s)	578, 861
TaqI	TCGA	3 cut(s)	644, 807, 904
TaqII	GACCGA	1 cut(s)	841
TasI	AATT	6 cut(s)	236, 258, 530, 803, 818, 897
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	6 cut(s)	81, 123, 161, 715, 789, 882
Tru1I	TTAA	6 cut(s)	63, 339, 482, 579, 900, 933
Tru9I	TTAA	6 cut(s)	63, 339, 482, 579, 900, 933
TscAI	CASTG	3 cut(s)	139, 238, 340
TseFI	GTSAC	2 cut(s)	13, 652
TseI	GCWGC	1 cut(s)	675
Tsp45I	GTSAC	2 cut(s)	13, 652
TspDTI	ATGAA	2 cut(s)	197, 774
TspGWI	ACGGA	3 cut(s)	588, 627, 819
TspRI	CASTG	3 cut(s)	139, 238, 340
Van91I	CCANNNNNTGG	1 cut(s)	725
VpaK11BI	GGWCC	3 cut(s)	101, 389, 853
VspI	ATTAAT	1 cut(s)	900
XapI	RAATTY	2 cut(s)	236, 803
XcmI	CCANNNNNNNNNTGG	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	2 cut(s)	419, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.