Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001884

Physical Location & Seq

Genomic Coordinates Forward (+)

17837436 .. 17842774

Gene Structure 5339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24730.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGATTGCACCAGTAGTACTAGCTTTGACAGTGGGTTTCCTTGGCTGGGCTTATCAGGCGCTTAAGCCTCCCCCTCCTAAATTATGTGGTTCACCTGTTGGTCCTCCTGTCACTTCACCTAGAGTGAAACTCAATGATGGTAGATATTTGGCCTACAGGGAGTTTGGAGTGCCTAAAGAAGAGGCAAAACACAAGATCGTCATCATTCATGGCTTTGACAGCTCCAAAGATTTGCATTTACCTATTTCTCGAGAACTCATTGACGAGTTAAGGATATATTTCCTCTTCTTTGATAGAGCTGGTTATGGCGAAAGTGACCCTTATCCATCACGCTCAGTAAAGAGTGAAGCATATGATATTCAAGAACTGGCCGACTTGTTGCAGATTGGGTCCAAATTCTATGTAATTGGAATCTCAATGGGGGCTTACCCTGTTTGGAGTTGCTTGAAATACATACCGCACAGATTGTTAGGAGCTTCCCTGGTAGTTCCTTTTGTGAACTACTGGTGGCCTTGTATTCCTGCTAATCTATTGAGAGAGTCCTTTCAGAAGCTGCAGGTATCGGACCAACGGACATTCAAAGTTGCACATTACTTCCCATGGCTACTTCATTGGTGGATGACCCAGAAATGGTTCACTGCATTAAGTATGATGGCTGGAAATATGGAGATCTTCACCCCGAAAGACCTAGAAATATTGAAGAAAATTTCTGAATCCCCAAGTGTTGGTCAGGAAAAGGTGCGACAGCAAGGAGAGCATGAATCTCTTTACCGAGACCTACTGGCTAGCTATGGAAAATGGGAATTCGACCCCATAGACTTAACGAATCCATTTCCAAACAATGAGGGTTCAGTTCACATTTGGCAAGGTTATGAAGACAGGATCATTCCATATAAAGTAAACCGTTATATTGCCGAGAAGCTTCCCTGGATTCATTATCACGAGGTTCCTGATTATGGCCATTTTCTCTTCTTTGAGAGTGATCTATGTGAGGCTGTTTTGAAGGCACTCCTGCTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

341

Amino Acids

39.26

Weight (kDa)

6.42

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	66 - 377	5.3e-09	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22460 AT5G22460 AT5G22460
fragaria_vesca	FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_7g05600
malus_domestica	MD07G1064300.v1.1 MD07G1064500.v1.1 MD11G1163800.v1.1
prunus_persica	Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1
pyrus_communis	pycom03g09790
rosa_chinensis	RchiOBHm_Chr5g0044301 RchiOBHm_Chr5g0044321 RchiOBHm_Chr5g0044331
rosa_laevigata	RLG00000034264 RLG00000034265
rosa_multiflora	Rmu_co8240737.1_g000001 Rmu_co8478079.1_g000001 Rmu_sc0002307.1_g000004 Rmu_sc0004741.1_g000022 Rmu_sc0015666.1_g000005 Rmu_sc0016943.1_g000002 Rmu_sc0039604.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036650 Rroxscaffold_1G00036660 Rroxscaffold_4G00311410 Rroxscaffold_7G00192630
rosa_rugosa	Rorug05G0212900 Rorug05G0213000 Rorug05G0213100
rosa_samantha	Rh3CG234200 Rh5AG297600 Rh5BG304900 Rh5BG305000 Rh5CG331800 Rh5CG331900 Rh5DG314100 Rh5DG314200
rosa_wichuraiana	Rw5G027540 Rw5G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	547
AccB7I	CCANNNNNTGG	1 cut(s)	725
AciI	CCGC	1 cut(s)	458
AclWI	GGATC	1 cut(s)	890
AcoI	YGGCCR	2 cut(s)	369, 958
AcsI	RAATTY	3 cut(s)	395, 705, 803
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	4 cut(s)	46, 630, 725, 956
AflII	CTTAAG	1 cut(s)	62
AgsI	TTSAA	5 cut(s)	362, 448, 580, 700, 1003
AjnI	CCWGG	2 cut(s)	480, 926
AluBI	AGCT	7 cut(s)	23, 222, 299, 476, 553, 789, 922
AluI	AGCT	7 cut(s)	23, 222, 299, 476, 553, 789, 922
Alw26I	GTCTC	1 cut(s)	768
AlwI	GGATC	1 cut(s)	890
AlwNI	CAGNNNCTG	1 cut(s)	553
Ama87I	CYCGRG	1 cut(s)	249
AoxI	GGCC	4 cut(s)	150, 369, 509, 958
ApeKI	GCWGC	1 cut(s)	553
ApoI	RAATTY	3 cut(s)	395, 705, 803
Asp700I	GAANNNNTTC	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	3 cut(s)	101, 390, 565
AsuHPI	GGTGA	3 cut(s)	84, 108, 667
AsuNHI	GCTAGC	1 cut(s)	785
AvaI	CYCGRG	1 cut(s)	249
AvaII	GGWCC	3 cut(s)	101, 390, 565
BalI	TGGCCA	1 cut(s)	960
BauI	CACGAG	1 cut(s)	941
BbsI	GAAGAC	1 cut(s)	882
BbvI	GCAGC	1 cut(s)	540
BccI	CCATC	3 cut(s)	131, 334, 646
BciT130I	CCWGG	2 cut(s)	482, 928
BcoDI	GTCTC	1 cut(s)	768
BfaI	CTAG	4 cut(s)	20, 120, 689, 786
BfmI	CTRYAG	2 cut(s)	154, 554
BfoI	RGCGCY	1 cut(s)	62
BfrI	CTTAAG	1 cut(s)	62
BfuAI	ACCTGC	1 cut(s)	547
BglII	AGATCT	1 cut(s)	669
BisI	GCNGC	1 cut(s)	554
BlsI	GCNGC	1 cut(s)	555
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	482, 928
Bme18I	GGWCC	3 cut(s)	101, 390, 565
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	3 cut(s)	101, 390, 565
BmiI	GGNNCC	2 cut(s)	391, 948
BmrFI	CCNGG	2 cut(s)	482, 928
BmtI	GCTAGC	1 cut(s)	789
BpiI	GAAGAC	1 cut(s)	882
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
BsaBI	GATNNNNATC	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	768
BsaJI	CCNNGG	4 cut(s)	40, 480, 599, 926
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 630, 725, 956
Bse1I	ACTGG	4 cut(s)	11, 372, 509, 786
Bse8I	GATNNNNATC	1 cut(s)	200
BseBI	CCWGG	2 cut(s)	482, 928
BseDI	CCNNGG	4 cut(s)	40, 480, 599, 926
BseGI	GGATG	1 cut(s)	624
BseJI	GATNNNNATC	1 cut(s)	200
BseLI	CCNNNNNNNGG	4 cut(s)	46, 630, 725, 956
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	4 cut(s)	11, 372, 509, 786
BseXI	GCAGC	1 cut(s)	540
BseYI	CCCAGC	1 cut(s)	45
BshFI	GGCC	4 cut(s)	152, 371, 511, 960
BsiHKCI	CYCGRG	1 cut(s)	249
BslI	CCNNNNNNNGG	4 cut(s)	46, 630, 725, 956
BsmAI	GTCTC	1 cut(s)	768
BsnI	GGCC	4 cut(s)	152, 371, 511, 960
Bso31I	GGTCTC	1 cut(s)	768
BsoBI	CYCGRG	1 cut(s)	249
Bsp143I	GATC	4 cut(s)	195, 669, 882, 982
Bsp19I	CCATGG	1 cut(s)	599
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	4 cut(s)	152, 371, 511, 960
BspCNI	CTCAG	1 cut(s)	347
BspLI	GGNNCC	2 cut(s)	391, 948
BspMAI	CTGCAG	1 cut(s)	558
BspMI	ACCTGC	1 cut(s)	547
BspOI	GCTAGC	1 cut(s)	789
BspPI	GGATC	1 cut(s)	890
BspTI	CTTAAG	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	768
BsrI	ACTGG	4 cut(s)	11, 372, 509, 786
BssECI	CCNNGG	4 cut(s)	40, 480, 599, 926
BssMI	GATC	4 cut(s)	195, 669, 882, 982
BssSI	CACGAG	1 cut(s)	941
BssT1I	CCWWGG	2 cut(s)	40, 599
Bst2BI	CACGAG	1 cut(s)	941
Bst2UI	CCWGG	2 cut(s)	482, 928
Bst4CI	ACNGT	2 cut(s)	31, 905
Bst6I	CTCTTC	3 cut(s)	174, 290, 974
BstAFI	CTTAAG	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	787
BstDEI	CTNAG	1 cut(s)	334
BstDSI	CCRYGG	1 cut(s)	599
BstF5I	GGATG	1 cut(s)	624
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	4 cut(s)	198, 672, 885, 985
BstMAI	GTCTC	1 cut(s)	768
BstMBI	GATC	4 cut(s)	195, 669, 882, 982
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 219, 754
BstNI	CCWGG	2 cut(s)	482, 928
BstSCI	CCNGG	2 cut(s)	480, 926
BstSFI	CTRYAG	2 cut(s)	154, 554
BstV1I	GCAGC	1 cut(s)	540
BstV2I	GAAGAC	1 cut(s)	882
BstX2I	RGATCY	1 cut(s)	669
BstYI	RGATCY	1 cut(s)	669
BsuRI	GGCC	4 cut(s)	152, 371, 511, 960
BtgI	CCRYGG	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	624
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	2 cut(s)	36, 636
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	1 cut(s)	787
CaiI	CAGNNNCTG	1 cut(s)	553
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	3 cut(s)	101, 390, 565
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	3 cut(s)	209, 600, 758
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	4 cut(s)	197, 671, 884, 984
DpnII	GATC	4 cut(s)	195, 669, 882, 982
EaeI	YGGCCR	2 cut(s)	369, 958
Eam1104I	CTCTTC	3 cut(s)	174, 290, 974
EarI	CTCTTC	3 cut(s)	174, 290, 974
Eco130I	CCWWGG	2 cut(s)	40, 599
Eco31I	GGTCTC	1 cut(s)	768
Eco47I	GGWCC	3 cut(s)	101, 390, 565
Eco88I	CYCGRG	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	803
EcoRII	CCWGG	2 cut(s)	480, 926
EcoT14I	CCWWGG	2 cut(s)	40, 599
ErhI	CCWWGG	2 cut(s)	40, 599
FaeI	CATG	3 cut(s)	212, 603, 761
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FatI	CATG	3 cut(s)	208, 599, 757
FauNDI	CATATG	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	554
FokI	GGATG	1 cut(s)	631
Fsp4HI	GCNGC	1 cut(s)	554
FspBI	CTAG	4 cut(s)	20, 120, 689, 786
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	554
GsaI	CCCAGC	1 cut(s)	49
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	4 cut(s)	152, 371, 511, 960
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	3 cut(s)	212, 603, 761
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	6 cut(s)	411, 539, 713, 761, 826, 931
HphI	GGTGA	3 cut(s)	84, 108, 667
Hpy166II	GTNNAC	5 cut(s)	92, 499, 636, 856, 901
Hpy188I	TCNGA	3 cut(s)	549, 565, 712
Hpy188III	TCNNGA	6 cut(s)	249, 251, 362, 731, 941, 950
Hpy8I	GTNNAC	5 cut(s)	92, 499, 636, 856, 901
HpyAV	CCTTC	1 cut(s)	997
HpyCH4III	ACNGT	2 cut(s)	31, 905
HpyCH4V	TGCA	6 cut(s)	8, 235, 382, 556, 587, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 219, 754
HpyF3I	CTNAG	1 cut(s)	334
Hsp92II	CATG	3 cut(s)	212, 603, 761
HspAI	GCGC	1 cut(s)	59
Kzo9I	GATC	4 cut(s)	195, 669, 882, 982
LmnI	GCTCC	2 cut(s)	227, 473
Lsp1109I	GCAGC	1 cut(s)	540
MaeI	CTAG	4 cut(s)	20, 120, 689, 786
MaeIII	GTNAC	2 cut(s)	109, 314
MalI	GATC	4 cut(s)	197, 671, 884, 984
MboI	GATC	4 cut(s)	195, 669, 882, 982
MboII	GAAGA	6 cut(s)	191, 277, 664, 712, 887, 961
MflI	RGATCY	1 cut(s)	669
MlsI	TGGCCA	1 cut(s)	960
MluCI	AATT	5 cut(s)	80, 395, 405, 705, 803
MluNI	TGGCCA	1 cut(s)	960
MlyI	GAGTC	1 cut(s)	548
MnlI	CCTC	8 cut(s)	78, 84, 114, 175, 293, 838, 937, 985
Mox20I	TGGCCA	1 cut(s)	960
MroXI	GAANNNNTTC	1 cut(s)	632
MscI	TGGCCA	1 cut(s)	960
MseI	TTAA	4 cut(s)	63, 269, 644, 821
Msp20I	TGGCCA	1 cut(s)	960
MspCI	CTTAAG	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	482, 928
MvaI	CCWGG	2 cut(s)	482, 928
MwoI	GCNNNNNNNGC	3 cut(s)	56, 219, 754
NcoI	CCATGG	1 cut(s)	599
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	4 cut(s)	195, 669, 882, 982
NheI	GCTAGC	1 cut(s)	785
NlaIII	CATG	3 cut(s)	212, 603, 761
NlaIV	GGNNCC	2 cut(s)	391, 948
NmeAIII	GCCGAG	1 cut(s)	940
NmuCI	GTSAC	2 cut(s)	109, 314
PaeR7I	CTCGAG	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	632
PfeI	GAWTC	5 cut(s)	411, 713, 761, 826, 931
PflMI	CCANNNNNTGG	1 cut(s)	725
PkrI	GCNGC	1 cut(s)	555
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
Psp6I	CCWGG	2 cut(s)	480, 926
PspFI	CCCAGC	1 cut(s)	45
PspGI	CCWGG	2 cut(s)	480, 926
PspN4I	GGNNCC	2 cut(s)	391, 948
PspPI	GGNCC	3 cut(s)	101, 390, 565
PstI	CTGCAG	1 cut(s)	558
PstNI	CAGNNNCTG	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	669
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SaqAI	TTAA	4 cut(s)	63, 269, 644, 821
SatI	GCNGC	1 cut(s)	554
Sau3AI	GATC	4 cut(s)	195, 669, 882, 982
Sau96I	GGNCC	3 cut(s)	101, 390, 565
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	2 cut(s)	482, 928
SfcI	CTRYAG	2 cut(s)	154, 554
Sfr274I	CTCGAG	1 cut(s)	249
SinI	GGWCC	3 cut(s)	101, 390, 565
SlaI	CTCGAG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	62, 249
SmoI	CTYRAG	2 cut(s)	62, 249
Sse9I	AATT	5 cut(s)	80, 395, 405, 705, 803
SsiI	CCGC	1 cut(s)	458
SspI	AATATT	1 cut(s)	696
SspMI	CTAG	4 cut(s)	20, 120, 689, 786
StyD4I	CCNGG	2 cut(s)	480, 926
StyI	CCWWGG	2 cut(s)	40, 599
TaaI	ACNGT	2 cut(s)	31, 905
TaqI	TCGA	2 cut(s)	250, 807
TasI	AATT	5 cut(s)	80, 395, 405, 705, 803
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	5 cut(s)	411, 713, 761, 826, 931
Tru1I	TTAA	4 cut(s)	63, 269, 644, 821
Tru9I	TTAA	4 cut(s)	63, 269, 644, 821
TscAI	CASTG	2 cut(s)	36, 643
TseFI	GTSAC	2 cut(s)	109, 314
TseI	GCWGC	1 cut(s)	553
Tsp45I	GTSAC	2 cut(s)	109, 314
TspDTI	ATGAA	5 cut(s)	197, 599, 774, 888, 923
TspGWI	ACGGA	1 cut(s)	586
TspRI	CASTG	2 cut(s)	36, 643
Van91I	CCANNNNNTGG	1 cut(s)	725
Vha464I	CTTAAG	1 cut(s)	62
VpaK11BI	GGWCC	3 cut(s)	101, 390, 565
XapI	RAATTY	3 cut(s)	395, 705, 803
XhoI	CTCGAG	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	632
XspI	CTAG	4 cut(s)	20, 120, 689, 786
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.