RchiOBHm_Chr5g0044301
ERF Family

BEST Arabidopsis thaliana protein match is alpha beta-Hydrolases superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001884
Physical Location & Seq
Forward (+)
39634476 .. 39636989
2514 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32251

Sequence Viewer

Length: 285 bp
ATGATTGCCCCAGTAGTACTAGCTTTGACAGTGGGTTTTCTTGGGTGGGCATATCAGGCACTAAAGCCTCCCCCTCCCAAAATATGCGGTTCACCTGGTGGTCCTCCTGTCACTTCACCTAGAGTGAAACTCAGTGATGGTAGATATTTGGCCTACAGGGAGTTTGGAGTGCCTAAAGAAGAGGCAAAACACAAGATCATCATCATTCATGGCTTTAGCAGTTCCAAAGATCTGGCTTTACCTGTTTCTCAACAAGTGATCTTTTTGAACTCGTTGACGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

94

Amino Acids

10.1

Weight (kDa)

9.67

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 87
AdeI CACNNNGTG 1 cut(s) 98
AfaI GTAC 1 cut(s) 18
AgsI TTSAA 1 cut(s) 268
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AoxI GGCC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 84, 108
AvaII GGWCC 1 cut(s) 101
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 96
BfaI CTAG 2 cut(s) 20, 120
BfmI CTRYAG 1 cut(s) 154
BglII AGATCT 1 cut(s) 229
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 96
BmrI ACTGGG 1 cut(s) 5
BmuI ACTGGG 1 cut(s) 5
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BsaBI GATNNNNATC 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 11
Bse8I GATNNNNATC 1 cut(s) 200
BseBI CCWGG 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 200
BseMII CTCAG 1 cut(s) 145
BseNI ACTGG 1 cut(s) 11
BshFI GGCC 1 cut(s) 152
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 3 cut(s) 195, 229, 258
BspACI CCGC 1 cut(s) 87
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 144
BsrI ACTGG 1 cut(s) 11
BssMI GATC 3 cut(s) 195, 229, 258
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 131
BstKTI GATC 3 cut(s) 198, 232, 261
BstMBI GATC 3 cut(s) 195, 229, 258
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 229
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 1 cut(s) 152
BtsIMutI CAGTG 2 cut(s) 36, 139
Cfr13I GGNCC 1 cut(s) 101
CsiI ACCWGGT 1 cut(s) 94
Csp6I GTAC 1 cut(s) 17
CviAII CATG 1 cut(s) 209
CviJI RGCY 5 cut(s) 23, 67, 152, 213, 236
CviKI_1 RGCY 5 cut(s) 23, 67, 152, 213, 236
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 1 cut(s) 131
DpnI GATC 3 cut(s) 197, 231, 260
DpnII GATC 3 cut(s) 195, 229, 258
DraIII CACNNNGTG 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 94
FaeI CATG 1 cut(s) 212
FaiI YATR 3 cut(s) 52, 85, 210
FatI CATG 1 cut(s) 208
FspBI CTAG 2 cut(s) 20, 120
HaeIII GGCC 1 cut(s) 152
Hin1II CATG 1 cut(s) 212
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HphI GGTGA 2 cut(s) 84, 108
Hpy166II GTNNAC 2 cut(s) 92, 276
Hpy8I GTNNAC 2 cut(s) 92, 276
HpyCH4III ACNGT 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 131
Hsp92II CATG 1 cut(s) 212
Kzo9I GATC 3 cut(s) 195, 229, 258
LpnPI CCDG 8 cut(s) 24, 41, 81, 108, 120, 142, 218, 255
MabI ACCWGGT 1 cut(s) 94
MaeI CTAG 2 cut(s) 20, 120
MaeIII GTNAC 1 cut(s) 109
MalI GATC 3 cut(s) 197, 231, 260
MboI GATC 3 cut(s) 195, 229, 258
MboII GAAGA 1 cut(s) 191
MflI RGATCY 1 cut(s) 229
MnlI CCTC 4 cut(s) 78, 84, 114, 175
MseI TTAA 1 cut(s) 283
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeII GATC 3 cut(s) 195, 229, 258
NlaIII CATG 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 283
Sau3AI GATC 3 cut(s) 195, 229, 258
Sau96I GGNCC 1 cut(s) 101
ScaI AGTACT 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 96
SetI ASST 4 cut(s) 25, 97, 121, 244
SexAI ACCWGGT 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 154
SinI GGWCC 1 cut(s) 101
SsiI CCGC 1 cut(s) 87
SspMI CTAG 2 cut(s) 20, 120
StyD4I CCNGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 31
TatI WGTACW 1 cut(s) 16
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TscAI CASTG 2 cut(s) 36, 139
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 197
TspRI CASTG 2 cut(s) 36, 139
VpaK11BI GGWCC 1 cut(s) 101
XspI CTAG 2 cut(s) 20, 120
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.