Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000873

Physical Location & Seq

Genomic Coordinates Forward (+)

5872373 .. 5876067

Gene Structure 3695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05600.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTTTAGGAGAGTCGCATTTTTGTTGCTGGTTGGATTGGTGTCATGGGCTTATCAGGCCACCCAACCGCCCCCTCCCAAGATTTGTGGTTCCTCTGGTGGTCCACCCATCACAGCTTCTAGGATAAAGCTAAGAGATGGAAGATACTTGGCCTACAAGGAGCATGGTGTGTCGAAACATGTAGCCAGATATAAGATTATCTTTGTTCATGGCTTCAGTTCTTCCAGACTTGACCCAGTTGCGACCATACCCTCACAGGAATTTATCCAAGAGTTAGGGGTACACATTGTGTCTTTTGACAGACCAGGCTATGGTGAAAGTGATCCAGATCCTAAACGAACAGTGAAGAGTGTGGCTTTGGATATAGAAGAGCTTGCTGACCAGCTCAGATTCGGATCCAAATTTTATGTAGTCGGTTATTCTATGGGTGGACAGGTTATCTGGAGCTGTCTTCAGTACATCCCTCATAGGCTTGCTGGAGCTACACTGTATGCTCCTGTTGTTAACTACTGGTGGCCGGGCTTTCCTGCAAACTTGTCAGCAGATGCGTACTATAAACAACCCCTCGGGGATCAGTGGGCTCTTCGAGTTGCTCATTATATACCATGGCTAACATACTGGTGGAACACTCAGAAAGTATTTCCTTCATCAACCGTTATAGCTCGTAATCCAGAGAACTTCTCCAGTCAAGACTTGGAAATACTAAGGAATATGCAGGCTTCTGGTATACTAAGGCCTCATGCAAACCAGCAAGGGGTATACGAGTCGAACCATCGTGACTTGATGATTGGATTTGGGAGTTGGGAGTTTGACCCTATTGAAATCAAGAACCCTTTCCCCAACAATGAAGGGTCAGTCCATCTGTGGCAGGGTGATGAAGATAGGCTTGTCCCGGTTGAACTTCAACGCTATATTGTGGGGAAGCTTCCATGGATTGACTACCATGAATTACAAGGTGCTGGGCACTTGTTTGTATATAATGATGGTATTAATGAAGCTATGTTAATGGCAATGCTTACTGGGGAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

344

Amino Acids

38.93

Weight (kDa)

6.6

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	64 - 181	1.2e-08	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	66 - 202	6.7e-13	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	66 - 181	1.2e-12	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74300 AT1G74300 AT2G36290 AT2G36290
fragaria_vesca	FvH4_6g18490 FvH4_6g18490 FvH4_6g18490 FvH4_7g05600 FvH4_7g05600
malus_domestica	MD07G1064200.v1.1 MD07G1064400.v1.1 MD07G1064600.v1.1 MD07G1065000.v1.1 MD07G1065100.v1.1 MD07G1065200.v1.1 MD07G1065300.v1.1 MD12G1024000.v1.1 MD14G1021400.v1.1
prunus_persica	Prupe.2G079000_v2.0.a1 Prupe.2G079000_v2.0.a1 Prupe.2G079000_v2.0.a1 Prupe.7G112400_v2.0.a1
pyrus_communis	pycom07g04990 pycom12g02260 pycom14g02080
rosa_chinensis	RchiOBHm_Chr1g0332431 RchiOBHm_Chr1g0332511 RchiOBHm_Chr1g0332561 RchiOBHm_Chr3g0473031
rosa_laevigata	RLG00000024036 RLG00000029596 RLG00000029656 RLG00000029665 RLG00000029670
rosa_multiflora	Rmu_sc0002307.1_g000026 Rmu_sc0006336.1_g000009 Rmu_sc0007458.1_g000015 Rmu_ssc0000161.1_g000006
rosa_roxburghii	Rroxscaffold_4G00318150 Rroxscaffold_4G00318180 Rroxscaffold_6G00408360
rosa_rugosa	Rorug01G0100700 Rorug01G0100800 Rorug01G0100900 Rorug01G0101600 Rorug01G0101600 Rorug03G0130800
rosa_samantha	Rh1AG124900 Rh1AG126000 Rh1AG126200 Rh1BG095300 Rh1CG119000 Rh1CG119900 Rh1CG120100 Rh1DG129800 Rh1DG130300 Rh1DG130400 Rh3AG182600 Rh3BG208900 Rh3CG206000 Rh3DG206000
rosa_wichuraiana	Rw0G002590 Rw1G010150 Rw1G010180 Rw1G010700 Rw3G016050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccI	GTMKAC	2 cut(s)	727, 759
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	5 cut(s)	317, 323, 390, 403, 579
AcoI	YGGCCR	1 cut(s)	515
AcsI	RAATTY	2 cut(s)	260, 401
AcuI	CTGAAG	2 cut(s)	199, 437
AdeI	CACNNNGTG	1 cut(s)	289
AfaI	GTAC	3 cut(s)	282, 458, 551
AfiI	CCNNNNNNNGG	2 cut(s)	311, 754
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	3 cut(s)	821, 899, 905
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	9 cut(s)	116, 130, 373, 385, 447, 482, 662, 925, 998
AluI	AGCT	9 cut(s)	116, 130, 373, 385, 447, 482, 662, 925, 998
AlwI	GGATC	5 cut(s)	317, 323, 390, 403, 579
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	4 cut(s)	57, 150, 515, 734
ApoI	RAATTY	2 cut(s)	260, 401
AseI	ATTAAT	1 cut(s)	990
Asp700I	GAANNNNTTC	1 cut(s)	833
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	2 cut(s)	519, 893
AsuHPI	GGTGA	2 cut(s)	326, 884
AvaI	CYCGRG	1 cut(s)	566
AvaII	GGWCC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	966
BamHI	GGATCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	443
BccI	CCATC	5 cut(s)	116, 131, 780, 867, 977
BciT130I	CCWGG	1 cut(s)	306
BcnI	CCSGG	2 cut(s)	519, 893
BfaI	CTAG	1 cut(s)	120
Bme1390I	CCNGG	3 cut(s)	306, 519, 893
Bme18I	GGWCC	1 cut(s)	101
BmeT110I	CYCGRG	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	91, 397
BmrFI	CCNGG	3 cut(s)	306, 519, 893
BmrI	ACTGGG	2 cut(s)	230, 1029
BmsI	GCATC	1 cut(s)	535
BmuI	ACTGGG	2 cut(s)	230, 1029
BpiI	GAAGAC	1 cut(s)	443
BplI	GAGNNNNNCTC	2 cut(s)	665, 697
BpmI	CTGGAG	3 cut(s)	463, 498, 667
BpuMI	CCSGG	2 cut(s)	519, 893
BsaBI	GATNNNNATC	2 cut(s)	327, 394
BsaJI	CCNNGG	3 cut(s)	565, 605, 929
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 754
Bse1I	ACTGG	5 cut(s)	236, 515, 623, 684, 1024
Bse3DI	GCAATG	1 cut(s)	1017
Bse8I	GATNNNNATC	2 cut(s)	327, 394
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	565, 605, 929
BseGI	GGATG	1 cut(s)	459
BseJI	GATNNNNATC	2 cut(s)	327, 394
BseLI	CCNNNNNNNGG	2 cut(s)	311, 754
BseMI	GCAATG	1 cut(s)	1017
BseMII	CTCAG	2 cut(s)	400, 644
BseNI	ACTGG	5 cut(s)	236, 515, 623, 684, 1024
BseSI	GKGCMC	1 cut(s)	966
BseYI	CCCAGC	1 cut(s)	959
BshFI	GGCC	4 cut(s)	59, 152, 517, 736
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	2 cut(s)	518, 893
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	2 cut(s)	311, 754
BsmFI	GGGAC	1 cut(s)	875
BsnI	GGCC	4 cut(s)	59, 152, 517, 736
BsoBI	CYCGRG	1 cut(s)	566
Bsp1286I	GDGCHC	2 cut(s)	583, 966
Bsp143I	GATC	4 cut(s)	322, 328, 395, 571
Bsp19I	CCATGG	2 cut(s)	605, 929
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	4 cut(s)	59, 152, 517, 736
BspCNI	CTCAG	2 cut(s)	399, 643
BspLI	GGNNCC	2 cut(s)	91, 397
BspPI	GGATC	5 cut(s)	317, 323, 390, 403, 579
BspQI	GCTCTTC	2 cut(s)	363, 588
BsrDI	GCAATG	1 cut(s)	1017
BsrI	ACTGG	5 cut(s)	236, 515, 623, 684, 1024
BssECI	CCNNGG	3 cut(s)	565, 605, 929
BssMI	GATC	4 cut(s)	322, 328, 395, 571
BssNAI	GTATAC	2 cut(s)	728, 760
BssT1I	CCWWGG	2 cut(s)	605, 929
Bst1107I	GTATAC	2 cut(s)	728, 760
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	3 cut(s)	343, 489, 655
Bst6I	CTCTTC	3 cut(s)	341, 363, 588
BstC8I	GCNNGC	3 cut(s)	375, 474, 717
BstDEI	CTNAG	5 cut(s)	131, 386, 630, 704, 731
BstDSI	CCRYGG	2 cut(s)	605, 929
BstF5I	GGATG	1 cut(s)	459
BstKTI	GATC	4 cut(s)	325, 331, 398, 574
BstMBI	GATC	4 cut(s)	322, 328, 395, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	3 cut(s)	304, 517, 891
BstSLI	GKGCMC	1 cut(s)	966
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	2 cut(s)	328, 395
BstYI	RGATCY	2 cut(s)	328, 395
BstZ17I	GTATAC	2 cut(s)	728, 760
BsuRI	GGCC	4 cut(s)	59, 152, 517, 736
BtgI	CCRYGG	2 cut(s)	605, 929
BtsCI	GGATG	1 cut(s)	459
BtsIMutI	CAGTG	3 cut(s)	348, 485, 581
Cac8I	GCNNGC	3 cut(s)	375, 474, 717
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	3 cut(s)	281, 457, 550
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	8 cut(s)	45, 164, 179, 209, 606, 740, 930, 944
CviQI	GTAC	3 cut(s)	281, 457, 550
DdeI	CTNAG	5 cut(s)	131, 386, 630, 704, 731
DpnI	GATC	4 cut(s)	324, 330, 397, 573
DpnII	GATC	4 cut(s)	322, 328, 395, 571
DraIII	CACNNNGTG	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	515
Eam1104I	CTCTTC	3 cut(s)	341, 363, 588
EarI	CTCTTC	3 cut(s)	341, 363, 588
Eco130I	CCWWGG	2 cut(s)	605, 929
Eco147I	AGGCCT	1 cut(s)	736
Eco24I	GRGCYC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	2 cut(s)	199, 437
Eco88I	CYCGRG	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	605, 929
EcoT38I	GRGCYC	1 cut(s)	583
ErhI	CCWWGG	2 cut(s)	605, 929
FaeI	CATG	8 cut(s)	48, 167, 182, 212, 609, 743, 933, 947
FalI	AAGNNNNNCTT	4 cut(s)	185, 217, 870, 902
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	8 cut(s)	44, 163, 178, 208, 605, 739, 929, 943
FblI	GTMKAC	2 cut(s)	727, 759
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	1 cut(s)	583
FspBI	CTAG	1 cut(s)	120
GsaI	CCCAGC	1 cut(s)	963
GsuI	CTGGAG	3 cut(s)	463, 498, 667
HaeIII	GGCC	4 cut(s)	59, 152, 517, 736
HapII	CCGG	2 cut(s)	518, 893
Hin1II	CATG	8 cut(s)	48, 167, 182, 212, 609, 743, 933, 947
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	923
HinfI	GANTC	3 cut(s)	12, 390, 764
HpaI	GTTAAC	1 cut(s)	505
HpaII	CCGG	2 cut(s)	518, 893
HphI	GGTGA	2 cut(s)	326, 884
Hpy166II	GTNNAC	6 cut(s)	104, 283, 431, 505, 728, 760
Hpy188I	TCNGA	3 cut(s)	389, 395, 633
Hpy188III	TCNNGA	7 cut(s)	225, 326, 442, 671, 689, 776, 826
Hpy8I	GTNNAC	6 cut(s)	104, 283, 431, 505, 728, 760
HpyAV	CCTTC	2 cut(s)	654, 842
HpyCH4III	ACNGT	3 cut(s)	343, 489, 655
HpyCH4V	TGCA	3 cut(s)	530, 715, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	5 cut(s)	131, 386, 630, 704, 731
Hsp92II	CATG	8 cut(s)	48, 167, 182, 212, 609, 743, 933, 947
KspAI	GTTAAC	1 cut(s)	505
Kzo9I	GATC	4 cut(s)	322, 328, 395, 571
LguI	GCTCTTC	2 cut(s)	363, 588
LmnI	GCTCC	4 cut(s)	160, 444, 479, 499
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	776
MalI	GATC	4 cut(s)	324, 330, 397, 573
MboI	GATC	4 cut(s)	322, 328, 395, 571
MboII	GAAGA	7 cut(s)	153, 213, 358, 380, 443, 575, 890
MflI	RGATCY	2 cut(s)	328, 395
MhlI	GDGCHC	2 cut(s)	583, 966
MluCI	AATT	3 cut(s)	260, 401, 947
MlyI	GAGTC	2 cut(s)	21, 773
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	6 cut(s)	84, 103, 262, 474, 575, 747
MroXI	GAANNNNTTC	1 cut(s)	833
MseI	TTAA	3 cut(s)	504, 990, 1004
MslI	CAYNNNNRTG	1 cut(s)	619
MspI	CCGG	2 cut(s)	518, 893
MspR9I	CCNGG	3 cut(s)	306, 519, 893
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	56
NciI	CCSGG	2 cut(s)	519, 893
NcoI	CCATGG	2 cut(s)	605, 929
NdeII	GATC	4 cut(s)	322, 328, 395, 571
NlaIII	CATG	8 cut(s)	48, 167, 182, 212, 609, 743, 933, 947
NlaIV	GGNNCC	2 cut(s)	91, 397
NmuCI	GTSAC	1 cut(s)	776
NspI	RCATGY	1 cut(s)	182
PceI	AGGCCT	1 cut(s)	736
PciI	ACATGT	1 cut(s)	178
PciSI	GCTCTTC	2 cut(s)	363, 588
PdmI	GAANNNNTTC	1 cut(s)	833
PfeI	GAWTC	1 cut(s)	390
PflMI	CCANNNNNTGG	1 cut(s)	311
PleI	GAGTC	2 cut(s)	20, 772
PpsI	GAGTC	2 cut(s)	20, 772
PscI	ACATGT	1 cut(s)	178
PshBI	ATTAAT	1 cut(s)	990
Psp6I	CCWGG	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	959
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	91, 397
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	2 cut(s)	328, 395
RsaI	GTAC	3 cut(s)	282, 458, 551
RsaNI	GTAC	3 cut(s)	281, 457, 550
RseI	CAYNNNNRTG	1 cut(s)	619
SapI	GCTCTTC	2 cut(s)	363, 588
SaqAI	TTAA	3 cut(s)	504, 990, 1004
Sau3AI	GATC	4 cut(s)	322, 328, 395, 571
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	2 cut(s)	21, 773
ScrFI	CCNGG	3 cut(s)	306, 519, 893
SduI	GDGCHC	2 cut(s)	583, 966
SfaNI	GCATC	1 cut(s)	535
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	619
Sse9I	AATT	3 cut(s)	260, 401, 947
SseBI	AGGCCT	1 cut(s)	736
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	736
StyD4I	CCNGG	3 cut(s)	304, 517, 891
StyI	CCWWGG	2 cut(s)	605, 929
TaaI	ACNGT	3 cut(s)	343, 489, 655
TaqI	TCGA	3 cut(s)	173, 586, 767
TasI	AATT	3 cut(s)	260, 401, 947
TatI	WGTACW	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	3 cut(s)	504, 990, 1004
Tru9I	TTAA	3 cut(s)	504, 990, 1004
TscAI	CASTG	3 cut(s)	348, 492, 581
TseFI	GTSAC	1 cut(s)	776
Tsp45I	GTSAC	1 cut(s)	776
TspDTI	ATGAA	6 cut(s)	197, 636, 861, 891, 960, 1008
TspRI	CASTG	3 cut(s)	348, 492, 581
Van91I	CCANNNNNTGG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	101
VspI	ATTAAT	1 cut(s)	990
XapI	RAATTY	2 cut(s)	260, 401
XceI	RCATGY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	691
XmiI	GTMKAC	2 cut(s)	727, 759
XmnI	GAANNNNTTC	1 cut(s)	833
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.