Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000873

Physical Location & Seq

Genomic Coordinates Forward (+)

42519506 .. 42522579

Gene Structure 3074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029665

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGATCGAGAATGTGAGAAGCACAAGAGTCATCACGAAAACAAAACTGCAGCTTGTGAGCTTTGGCGGAATCAGGATGTTTAGGAGAGTCGCATTTTTGTTGTTGGTTGGATTGCTGGCATGGGCTTATCAGGCCACCCAACCGCCCCCTCCGAAGATTTGCGGTTCCCCTGGCGGCCCACCCATCACAGCTCCTAGAATAAAGCTAAGAGATGGAAGATATTTGGCCTACAAGGAGCATGGTGTGTCAAAACAAGTGGCCAGATATAAGATTATCTTTGTTCATGCCTTTAGTTCTTCCAGACATGATGCAGTGATTGCGACCAAAACTTCACCAGAAGTTATCGAAGAGTTAGGGGTACACATTGTGTCTTTTGACAGACCAGGCTATGGTGAAAGTGATCCAGATCCTAAGCGAACAGTGAAGAGTCTGGCTTTAGATATAGAAGAGCTTGCTGACCAGCTCGGATTCGGATCCAAATTTTATGTAGTTGGATATTCTATGGGTGGACAGGTTATCTGGAGCTGTCTTCAGTACATCCCTCATAGGCTAGCTGGAGCTACACTCTATGCTCCTGTTGTCAACTACTGGTGGCCAGGCTTTCCTGCCAACTTGTCGACAGATGCCTACTATAAACAACCCCTCGGGGATCAATGGGCACTTCGAGTTGCTCACCATATACCATGGCTAACCTACTGGTGGAACACTCAGAAATTATTTCCTTCATCAAGCGTTACAGTTGGTAAACCAGAGATTTTCTCCAGTCAGGACTTGGAAATACTTAGGAAGATGCAGGCTTCTGGCGTACAAACTAACAGGCCGCACGGAAAGCAGCAAGGAGTATACGAGTCGAACCATCGTGACATGATGATTGGATTTGGGAGATGGGAGTTTGACCCTATAGAAATCAAGAACCCATTTCCCAACAATGAAGGGTCCGTCCATCTGTGGCAGGGTGATGAAGATAGGCTTGTCCCAGTTGAACTTCAACGCTTTATTGTGGGAAAGCTTCCATGGATTGACTACCATGAGTTAACAGGTGCTGGGCACTTGTTTGCATATAACGATGGTATAAATGAAGCCATGTTAAAGTCAATGCTGACTAGGGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

372

Amino Acids

42.04

Weight (kDa)

9.08

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	91 - 352	2e-14	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	91 - 353	1.3e-13	Alpha/beta hydrolase family
Hydrolase_4	PF12146	117 - 207	8.9e-07	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74300 AT1G74300 AT2G36290 AT2G36290
fragaria_vesca	FvH4_6g18490 FvH4_6g18490 FvH4_6g18490 FvH4_7g05600 FvH4_7g05600
malus_domestica	MD07G1064200.v1.1 MD07G1064400.v1.1 MD07G1064600.v1.1 MD07G1065000.v1.1 MD07G1065100.v1.1 MD07G1065200.v1.1 MD07G1065300.v1.1 MD12G1024000.v1.1 MD14G1021400.v1.1
prunus_persica	Prupe.2G079000_v2.0.a1 Prupe.2G079000_v2.0.a1 Prupe.2G079000_v2.0.a1 Prupe.7G112400_v2.0.a1
pyrus_communis	pycom07g04990 pycom12g02260 pycom14g02080
rosa_chinensis	RchiOBHm_Chr1g0332431 RchiOBHm_Chr1g0332511 RchiOBHm_Chr1g0332561 RchiOBHm_Chr3g0473031
rosa_laevigata	RLG00000024036 RLG00000029596 RLG00000029656 RLG00000029665 RLG00000029670
rosa_multiflora	Rmu_sc0002307.1_g000026 Rmu_sc0006336.1_g000009 Rmu_sc0007458.1_g000015 Rmu_ssc0000161.1_g000006
rosa_roxburghii	Rroxscaffold_4G00318150 Rroxscaffold_4G00318180 Rroxscaffold_6G00408360
rosa_rugosa	Rorug01G0100700 Rorug01G0100800 Rorug01G0100900 Rorug01G0101600 Rorug01G0101600 Rorug03G0130800
rosa_samantha	Rh1AG124900 Rh1AG126000 Rh1AG126200 Rh1BG095300 Rh1CG119000 Rh1CG119900 Rh1CG120100 Rh1DG129800 Rh1DG130300 Rh1DG130400 Rh3AG182600 Rh3BG208900 Rh3CG206000 Rh3DG206000
rosa_wichuraiana	Rw0G002590 Rw1G010150 Rw1G010180 Rw1G010700 Rw3G016050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	389
AccI	GTMKAC	2 cut(s)	617, 843
AciI	CCGC	5 cut(s)	66, 143, 162, 174, 821
AclWI	GGATC	5 cut(s)	395, 401, 468, 481, 657
AcoI	YGGCCR	2 cut(s)	258, 593
AcsI	RAATTY	1 cut(s)	479
AcuI	CTGAAG	1 cut(s)	515
AdeI	CACNNNGTG	1 cut(s)	367
AfaI	GTAC	3 cut(s)	360, 536, 807
AfiI	CCNNNNNNNGG	2 cut(s)	389, 699
AgsI	TTSAA	2 cut(s)	983, 989
AjnI	CCWGG	3 cut(s)	169, 382, 595
AlwI	GGATC	5 cut(s)	395, 401, 468, 481, 657
AlwNI	CAGNNNCTG	1 cut(s)	1043
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	6 cut(s)	132, 175, 225, 258, 593, 818
ApeKI	GCWGC	2 cut(s)	49, 832
ApoI	RAATTY	1 cut(s)	479
AspS9I	GGNCC	2 cut(s)	176, 936
AsuHPI	GGTGA	4 cut(s)	324, 404, 665, 968
AsuNHI	GCTAGC	1 cut(s)	550
AvaI	CYCGRG	1 cut(s)	644
AvaII	GGWCC	1 cut(s)	936
BaeGI	GKGCMC	2 cut(s)	661, 1050
BalI	TGGCCA	2 cut(s)	260, 595
BamHI	GGATCC	1 cut(s)	473
BbsI	GAAGAC	1 cut(s)	521
BbvI	GCAGC	2 cut(s)	61, 844
BccI	CCATC	6 cut(s)	191, 206, 864, 879, 951, 1061
BciT130I	CCWGG	3 cut(s)	171, 384, 597
BfaI	CTAG	3 cut(s)	195, 551, 1104
BfmI	CTRYAG	2 cut(s)	47, 900
BisI	GCNGC	4 cut(s)	50, 175, 821, 833
BlsI	GCNGC	4 cut(s)	51, 176, 822, 834
Bme1390I	CCNGG	3 cut(s)	171, 384, 597
Bme18I	GGWCC	1 cut(s)	936
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	2 cut(s)	176, 936
BmiI	GGNNCC	3 cut(s)	166, 475, 937
BmrFI	CCNGG	3 cut(s)	171, 384, 597
BmrI	ACTGGG	1 cut(s)	971
BmsI	GCATC	3 cut(s)	298, 613, 780
BmtI	GCTAGC	1 cut(s)	554
BmuI	ACTGGG	1 cut(s)	971
BpiI	GAAGAC	1 cut(s)	521
BplI	GAGNNNNNCTC	4 cut(s)	549, 581, 743, 775
BpmI	CTGGAG	3 cut(s)	541, 576, 745
Bpu10I	CCTNAGC	1 cut(s)	411
BsaBI	GATNNNNATC	2 cut(s)	405, 472
BsaJI	CCNNGG	4 cut(s)	169, 643, 683, 1013
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 699
Bse1I	ACTGG	4 cut(s)	593, 701, 762, 977
Bse8I	GATNNNNATC	2 cut(s)	405, 472
BseBI	CCWGG	3 cut(s)	171, 384, 597
BseDI	CCNNGG	4 cut(s)	169, 643, 683, 1013
BseGI	GGATG	2 cut(s)	81, 537
BseJI	GATNNNNATC	2 cut(s)	405, 472
BseLI	CCNNNNNNNGG	2 cut(s)	389, 699
BseMII	CTCAG	1 cut(s)	722
BseNI	ACTGG	4 cut(s)	593, 701, 762, 977
BseSI	GKGCMC	2 cut(s)	661, 1050
BseXI	GCAGC	2 cut(s)	61, 844
BseYI	CCCAGC	1 cut(s)	1043
BshFI	GGCC	6 cut(s)	134, 177, 227, 260, 595, 820
BsiHKCI	CYCGRG	1 cut(s)	644
BslFI	GGGAC	1 cut(s)	959
BslI	CCNNNNNNNGG	2 cut(s)	389, 699
BsmFI	GGGAC	1 cut(s)	959
BsnI	GGCC	6 cut(s)	134, 177, 227, 260, 595, 820
BsoBI	CYCGRG	1 cut(s)	644
Bsp1286I	GDGCHC	2 cut(s)	661, 1050
Bsp143I	GATC	5 cut(s)	3, 400, 406, 473, 649
Bsp19I	CCATGG	2 cut(s)	683, 1013
BspACI	CCGC	5 cut(s)	66, 143, 162, 174, 821
BspANI	GGCC	6 cut(s)	134, 177, 227, 260, 595, 820
BspCNI	CTCAG	1 cut(s)	721
BspLI	GGNNCC	3 cut(s)	166, 475, 937
BspMAI	CTGCAG	1 cut(s)	51
BspOI	GCTAGC	1 cut(s)	554
BspPI	GGATC	5 cut(s)	395, 401, 468, 481, 657
BspQI	GCTCTTC	1 cut(s)	441
BsrI	ACTGG	4 cut(s)	593, 701, 762, 977
BssECI	CCNNGG	4 cut(s)	169, 643, 683, 1013
BssMI	GATC	5 cut(s)	3, 400, 406, 473, 649
BssNAI	GTATAC	1 cut(s)	844
BssT1I	CCWWGG	2 cut(s)	683, 1013
Bst1107I	GTATAC	1 cut(s)	844
Bst2UI	CCWGG	3 cut(s)	171, 384, 597
Bst4CI	ACNGT	2 cut(s)	421, 739
Bst6I	CTCTTC	3 cut(s)	342, 419, 441
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstC8I	GCNNGC	4 cut(s)	117, 453, 552, 795
BstDEI	CTNAG	4 cut(s)	206, 411, 708, 782
BstDSI	CCRYGG	2 cut(s)	683, 1013
BstF5I	GGATG	2 cut(s)	81, 537
BstKTI	GATC	5 cut(s)	6, 403, 409, 476, 652
BstMBI	GATC	5 cut(s)	3, 400, 406, 473, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 317, 829
BstNI	CCWGG	3 cut(s)	171, 384, 597
BstSCI	CCNGG	3 cut(s)	169, 382, 595
BstSFI	CTRYAG	2 cut(s)	47, 900
BstSLI	GKGCMC	2 cut(s)	661, 1050
BstV1I	GCAGC	2 cut(s)	61, 844
BstV2I	GAAGAC	1 cut(s)	521
BstX2I	RGATCY	2 cut(s)	406, 473
BstYI	RGATCY	2 cut(s)	406, 473
BstZ17I	GTATAC	1 cut(s)	844
BsuRI	GGCC	6 cut(s)	134, 177, 227, 260, 595, 820
BtgI	CCRYGG	2 cut(s)	683, 1013
BtsCI	GGATG	2 cut(s)	81, 537
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	2 cut(s)	318, 426
Cac8I	GCNNGC	4 cut(s)	117, 453, 552, 795
CaiI	CAGNNNCTG	1 cut(s)	1043
Cfr13I	GGNCC	2 cut(s)	176, 936
Csp6I	GTAC	3 cut(s)	359, 535, 806
CspCI	CAANNNNNGTGG	2 cut(s)	237, 272
CviAII	CATG	9 cut(s)	120, 239, 284, 305, 684, 865, 1014, 1028, 1084
CviQI	GTAC	3 cut(s)	359, 535, 806
DdeI	CTNAG	4 cut(s)	206, 411, 708, 782
DpnI	GATC	5 cut(s)	5, 402, 408, 475, 651
DpnII	GATC	5 cut(s)	3, 400, 406, 473, 649
DraIII	CACNNNGTG	1 cut(s)	367
EaeI	YGGCCR	2 cut(s)	258, 593
Eam1104I	CTCTTC	3 cut(s)	342, 419, 441
EarI	CTCTTC	3 cut(s)	342, 419, 441
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	2 cut(s)	683, 1013
Eco47I	GGWCC	1 cut(s)	936
Eco57I	CTGAAG	1 cut(s)	515
Eco88I	CYCGRG	1 cut(s)	644
EcoRII	CCWGG	3 cut(s)	169, 382, 595
EcoT14I	CCWWGG	2 cut(s)	683, 1013
ErhI	CCWWGG	2 cut(s)	683, 1013
FaeI	CATG	9 cut(s)	123, 242, 287, 308, 687, 868, 1017, 1031, 1087
FalI	AAGNNNNNCTT	4 cut(s)	260, 292, 954, 986
FaqI	GGGAC	1 cut(s)	959
FatI	CATG	9 cut(s)	119, 238, 283, 304, 683, 864, 1013, 1027, 1083
FblI	GTMKAC	2 cut(s)	617, 843
Fnu4HI	GCNGC	4 cut(s)	50, 175, 821, 833
FokI	GGATG	2 cut(s)	88, 524
Fsp4HI	GCNGC	4 cut(s)	50, 175, 821, 833
FspBI	CTAG	3 cut(s)	195, 551, 1104
GluI	GCNGC	4 cut(s)	50, 175, 821, 833
GsaI	CCCAGC	1 cut(s)	1047
GsuI	CTGGAG	3 cut(s)	541, 576, 745
HaeIII	GGCC	6 cut(s)	134, 177, 227, 260, 595, 820
Hin1II	CATG	9 cut(s)	123, 242, 287, 308, 687, 868, 1017, 1031, 1087
HincII	GTYRAC	3 cut(s)	583, 618, 1035
HindII	GTYRAC	3 cut(s)	583, 618, 1035
HindIII	AAGCTT	1 cut(s)	1007
HinfI	GANTC	6 cut(s)	27, 69, 87, 427, 468, 848
HpaI	GTTAAC	1 cut(s)	1035
HphI	GGTGA	4 cut(s)	324, 404, 665, 968
Hpy166II	GTNNAC	7 cut(s)	361, 509, 583, 618, 746, 844, 1035
Hpy188I	TCNGA	4 cut(s)	153, 467, 473, 711
Hpy188III	TCNNGA	9 cut(s)	7, 34, 73, 300, 404, 520, 767, 860, 910
Hpy8I	GTNNAC	7 cut(s)	361, 509, 583, 618, 746, 844, 1035
HpyAV	CCTTC	2 cut(s)	732, 926
HpyCH4III	ACNGT	2 cut(s)	421, 739
HpyCH4V	TGCA	4 cut(s)	49, 311, 793, 1058
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 317, 829
HpyF3I	CTNAG	4 cut(s)	206, 411, 708, 782
Hsp92II	CATG	9 cut(s)	123, 242, 287, 308, 687, 868, 1017, 1031, 1087
KspAI	GTTAAC	1 cut(s)	1035
Kzo9I	GATC	5 cut(s)	3, 400, 406, 473, 649
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	5 cut(s)	196, 235, 522, 557, 577
Lsp1109I	GCAGC	2 cut(s)	61, 844
LweI	GCATC	3 cut(s)	298, 613, 780
MaeI	CTAG	3 cut(s)	195, 551, 1104
MaeIII	GTNAC	2 cut(s)	733, 860
MalI	GATC	5 cut(s)	5, 402, 408, 475, 651
MboI	GATC	5 cut(s)	3, 400, 406, 473, 649
MboII	GAAGA	9 cut(s)	166, 228, 288, 359, 436, 458, 521, 799, 974
MflI	RGATCY	2 cut(s)	406, 473
MhlI	GDGCHC	2 cut(s)	661, 1050
MlsI	TGGCCA	2 cut(s)	260, 595
MluCI	AATT	2 cut(s)	479, 713
MluNI	TGGCCA	2 cut(s)	260, 595
MlyI	GAGTC	4 cut(s)	36, 96, 436, 857
MmeI	TCCRAC	2 cut(s)	88, 472
MnlI	CCTC	3 cut(s)	159, 552, 653
Mox20I	TGGCCA	2 cut(s)	260, 595
MscI	TGGCCA	2 cut(s)	260, 595
MseI	TTAA	2 cut(s)	1034, 1088
Msp20I	TGGCCA	2 cut(s)	260, 595
MspR9I	CCNGG	3 cut(s)	171, 384, 597
MvaI	CCWGG	3 cut(s)	171, 384, 597
MwoI	GCNNNNNNNGC	3 cut(s)	131, 317, 829
NcoI	CCATGG	2 cut(s)	683, 1013
NdeII	GATC	5 cut(s)	3, 400, 406, 473, 649
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	9 cut(s)	123, 242, 287, 308, 687, 868, 1017, 1031, 1087
NlaIV	GGNNCC	3 cut(s)	166, 475, 937
NmuCI	GTSAC	1 cut(s)	860
PciSI	GCTCTTC	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	69, 468
PflMI	CCANNNNNTGG	1 cut(s)	389
PkrI	GCNGC	4 cut(s)	51, 176, 822, 834
PleI	GAGTC	4 cut(s)	35, 95, 435, 856
PpsI	GAGTC	4 cut(s)	35, 95, 435, 856
Psp6I	CCWGG	3 cut(s)	169, 382, 595
PspFI	CCCAGC	1 cut(s)	1043
PspGI	CCWGG	3 cut(s)	169, 382, 595
PspN4I	GGNNCC	3 cut(s)	166, 475, 937
PspPI	GGNCC	2 cut(s)	176, 936
PstI	CTGCAG	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	1043
PsuI	RGATCY	2 cut(s)	406, 473
RsaI	GTAC	3 cut(s)	360, 536, 807
RsaNI	GTAC	3 cut(s)	359, 535, 806
SalI	GTCGAC	1 cut(s)	616
SapI	GCTCTTC	1 cut(s)	441
SaqAI	TTAA	2 cut(s)	1034, 1088
SatI	GCNGC	4 cut(s)	50, 175, 821, 833
Sau3AI	GATC	5 cut(s)	3, 400, 406, 473, 649
Sau96I	GGNCC	2 cut(s)	176, 936
SchI	GAGTC	4 cut(s)	36, 96, 436, 857
ScrFI	CCNGG	3 cut(s)	171, 384, 597
SduI	GDGCHC	2 cut(s)	661, 1050
SfaNI	GCATC	3 cut(s)	298, 613, 780
SfcI	CTRYAG	2 cut(s)	47, 900
SinI	GGWCC	1 cut(s)	936
Sse9I	AATT	2 cut(s)	479, 713
SsiI	CCGC	5 cut(s)	66, 143, 162, 174, 821
SspMI	CTAG	3 cut(s)	195, 551, 1104
StyD4I	CCNGG	3 cut(s)	169, 382, 595
StyI	CCWWGG	2 cut(s)	683, 1013
TaaI	ACNGT	2 cut(s)	421, 739
TaqI	TCGA	5 cut(s)	6, 345, 617, 664, 851
TasI	AATT	2 cut(s)	479, 713
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	2 cut(s)	177, 823
TfiI	GAWTC	2 cut(s)	69, 468
Tru1I	TTAA	2 cut(s)	1034, 1088
Tru9I	TTAA	2 cut(s)	1034, 1088
TscAI	CASTG	2 cut(s)	318, 426
TseFI	GTSAC	1 cut(s)	860
TseI	GCWGC	2 cut(s)	49, 832
Tsp45I	GTSAC	1 cut(s)	860
TspDTI	ATGAA	5 cut(s)	272, 714, 945, 975, 1092
TspGWI	ACGGA	2 cut(s)	840, 928
TspRI	CASTG	2 cut(s)	318, 426
Van91I	CCANNNNNTGG	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	936
XapI	RAATTY	1 cut(s)	479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	769
XmiI	GTMKAC	2 cut(s)	617, 843
XspI	CTAG	3 cut(s)	195, 551, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.