Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000873

Physical Location & Seq

Genomic Coordinates Forward (+)

18832722 .. 18838337

Gene Structure 5616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG206000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTATCTTATGGTTTGTTTTGTATCTGTCTCGGTTGCATTTACTATTATGTTGACCTGTGGTGCGTTCTTCCAGGAAATTGTTGAAGACTTGGGTGTCTACTTTGTGTCTTTTGACAGACCTGGTTATGGAGAGAGTGATCCTGATCCAAAGAGAACAGCGAAGAGTATGGCTTTAGATATAGAGGAGCTGGCTGATGAATTAGGATTAGGATCCAGATTCTATGTAATTGGTTTTTCCATGGGTGGACAGGTTCTTTGGGGTTGCCTCAAGTACATCCCTCACAGGCTAGCAGGAGCGGCACTATTAGCTCCAGTTGTTAATTACTGGTGGACCGGTATTCCTGCAAATCTATCTAACGAAGCATACCACCAACAGTTTCAGCAAGACCAATGGGCAGTTCGTGTTTCTCACTACACCCCTTGGCTTACCTATTTCTGGAACACTCAAAAATGGTTTCCCGCTTCAAGTGTTATGGCTCACAGCACAGATATTCTTTCTCAACAAGACAAAGAACTCCTCCCTAAGCTTTTCAAAAGAAAACCATATATGGACCAGGTAAGACAGCAAGGAGAATTCGAGTCCATTCACCGTGACATGAATATTGGATTTGGGACCTGGGAATTCAGTCCTCTGGATCTGGAAAATCCTTTTCCAAACAATGAAGCTTCTGTTCATGTGTGGCATGGAGATGAAGATAACATGGTTCCTGTTACTCTGCAACGATACATTGCCCAACAACTTCCCTGGATTCAATATCATGAGATACCAGGTGCTGGACACTTGTTCCCACATGCTGATGGGATGTGCAATACCATTGTCAAGGCACTTTTAACTGATGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

282

Amino Acids

32.31

Weight (kDa)

5.1

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	27 - 263	1.2e-13	alpha/beta hydrolase fold
Hydrolase_4	PF12146	30 - 262	1e-07	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	32 - 266	7.3e-16	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74300 AT1G74300 AT2G36290 AT2G36290
fragaria_vesca	FvH4_6g18490 FvH4_6g18490 FvH4_6g18490 FvH4_7g05600 FvH4_7g05600
malus_domestica	MD07G1064200.v1.1 MD07G1064400.v1.1 MD07G1064600.v1.1 MD07G1065000.v1.1 MD07G1065100.v1.1 MD07G1065200.v1.1 MD07G1065300.v1.1 MD12G1024000.v1.1 MD14G1021400.v1.1
prunus_persica	Prupe.2G079000_v2.0.a1 Prupe.2G079000_v2.0.a1 Prupe.2G079000_v2.0.a1 Prupe.7G112400_v2.0.a1
pyrus_communis	pycom07g04990 pycom12g02260 pycom14g02080
rosa_chinensis	RchiOBHm_Chr1g0332431 RchiOBHm_Chr1g0332511 RchiOBHm_Chr1g0332561 RchiOBHm_Chr3g0473031
rosa_laevigata	RLG00000024036 RLG00000029596 RLG00000029656 RLG00000029665 RLG00000029670
rosa_multiflora	Rmu_sc0002307.1_g000026 Rmu_sc0006336.1_g000009 Rmu_sc0007458.1_g000015 Rmu_ssc0000161.1_g000006
rosa_roxburghii	Rroxscaffold_4G00318150 Rroxscaffold_4G00318180 Rroxscaffold_6G00408360
rosa_rugosa	Rorug01G0100700 Rorug01G0100800 Rorug01G0100900 Rorug01G0101600 Rorug01G0101600 Rorug03G0130800
rosa_samantha	Rh1AG124900 Rh1AG126000 Rh1AG126200 Rh1BG095300 Rh1CG119000 Rh1CG119900 Rh1CG120100 Rh1DG129800 Rh1DG130300 Rh1DG130400 Rh3AG182600 Rh3BG208900 Rh3CG206000 Rh3DG206000
rosa_wichuraiana	Rw0G002590 Rw1G010150 Rw1G010180 Rw1G010700 Rw3G016050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	776
AccBSI	CCGCTC	1 cut(s)	299
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	2 cut(s)	299, 462
AclWI	GGATC	5 cut(s)	134, 140, 207, 220, 645
AcsI	RAATTY	2 cut(s)	575, 623
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	3 cut(s)	128, 438, 776
AgeI	ACCGGT	1 cut(s)	335
AgsI	TTSAA	4 cut(s)	86, 468, 535, 755
AjnI	CCWGG	6 cut(s)	72, 121, 555, 617, 746, 769
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	4 cut(s)	190, 311, 529, 668
AluI	AGCT	4 cut(s)	190, 311, 529, 668
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	5 cut(s)	134, 140, 207, 220, 645
AlwNI	CAGNNNCTG	1 cut(s)	776
ApoI	RAATTY	2 cut(s)	575, 623
ArsI	GACNNNNNNTTYG	2 cut(s)	240, 272
AsiGI	ACCGGT	1 cut(s)	335
AspS9I	GGNCC	3 cut(s)	333, 553, 615
AsuHPI	GGTGA	1 cut(s)	581
AsuNHI	GCTAGC	1 cut(s)	289
AvaII	GGWCC	3 cut(s)	333, 553, 615
BamHI	GGATCC	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	93
BccI	CCATC	1 cut(s)	794
BciT130I	CCWGG	6 cut(s)	74, 123, 557, 619, 748, 771
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	290
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	6 cut(s)	74, 123, 557, 619, 748, 771
Bme18I	GGWCC	3 cut(s)	333, 553, 615
BmgT120I	GGNCC	3 cut(s)	333, 553, 615
BmiI	GGNNCC	3 cut(s)	214, 616, 708
BmrFI	CCNGG	6 cut(s)	74, 123, 557, 619, 748, 771
BmtI	GCTAGC	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	254
BsaBI	GATNNNNATC	2 cut(s)	144, 211
BsaJI	CCNNGG	4 cut(s)	240, 422, 618, 746
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 438, 776
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	2 cut(s)	314, 332
Bse3DI	GCAATG	1 cut(s)	729
Bse8I	GATNNNNATC	2 cut(s)	144, 211
BseBI	CCWGG	6 cut(s)	74, 123, 557, 619, 748, 771
BseDI	CCNNGG	4 cut(s)	240, 422, 618, 746
BseGI	GGATG	2 cut(s)	276, 810
BseJI	GATNNNNATC	2 cut(s)	144, 211
BseLI	CCNNNNNNNGG	3 cut(s)	128, 438, 776
BseMI	GCAATG	1 cut(s)	729
BseNI	ACTGG	2 cut(s)	314, 332
BseRI	GAGGAG	2 cut(s)	200, 509
BshTI	ACCGGT	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	628
BslI	CCNNNNNNNGG	3 cut(s)	128, 438, 776
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	628
Bsp143I	GATC	4 cut(s)	139, 145, 212, 637
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	2 cut(s)	299, 462
BspHI	TCATGA	1 cut(s)	760
BspLI	GGNNCC	3 cut(s)	214, 616, 708
BspOI	GCTAGC	1 cut(s)	293
BspPI	GGATC	5 cut(s)	134, 140, 207, 220, 645
BsrBI	CCGCTC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	2 cut(s)	314, 332
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	4 cut(s)	240, 422, 618, 746
BssMI	GATC	4 cut(s)	139, 145, 212, 637
BssT1I	CCWWGG	2 cut(s)	240, 422
Bst2UI	CCWGG	6 cut(s)	74, 123, 557, 619, 748, 771
Bst4CI	ACNGT	2 cut(s)	378, 593
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	192, 291
BstDEI	CTNAG	1 cut(s)	525
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	276, 810
BstKTI	GATC	4 cut(s)	142, 148, 215, 640
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	4 cut(s)	139, 145, 212, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 308
BstNI	CCWGG	6 cut(s)	74, 123, 557, 619, 748, 771
BstNSI	RCATGY	1 cut(s)	797
BstSCI	CCNGG	6 cut(s)	72, 121, 555, 617, 746, 769
BstV2I	GAAGAC	1 cut(s)	93
BstX2I	RGATCY	2 cut(s)	212, 637
BstYI	RGATCY	2 cut(s)	212, 637
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	276, 810
Cac8I	GCNNGC	2 cut(s)	192, 291
CaiI	CAGNNNCTG	1 cut(s)	776
CciI	TCATGA	1 cut(s)	760
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	3 cut(s)	333, 553, 615
CsiI	ACCWGGT	3 cut(s)	121, 555, 769
Csp6I	GTAC	1 cut(s)	274
CspAI	ACCGGT	1 cut(s)	335
CviAII	CATG	7 cut(s)	241, 598, 677, 686, 703, 761, 794
CviJI	RGCY	9 cut(s)	173, 190, 194, 289, 311, 427, 479, 529, 668
CviKI_1	RGCY	9 cut(s)	173, 190, 194, 289, 311, 427, 479, 529, 668
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	4 cut(s)	141, 147, 214, 639
DpnII	GATC	4 cut(s)	139, 145, 212, 637
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	240, 422
Eco47I	GGWCC	3 cut(s)	333, 553, 615
EcoO109I	RGGNCCY	1 cut(s)	615
EcoRI	GAATTC	2 cut(s)	575, 623
EcoRII	CCWGG	6 cut(s)	72, 121, 555, 617, 746, 769
EcoT14I	CCWWGG	2 cut(s)	240, 422
ErhI	CCWWGG	2 cut(s)	240, 422
FaeI	CATG	7 cut(s)	244, 601, 680, 689, 706, 764, 797
FaqI	GGGAC	1 cut(s)	628
FatI	CATG	7 cut(s)	240, 597, 676, 685, 702, 760, 793
FauI	CCCGC	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	2 cut(s)	263, 817
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	297
HapII	CCGG	1 cut(s)	336
Hin1II	CATG	7 cut(s)	244, 601, 680, 689, 706, 764, 797
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HindIII	AAGCTT	2 cut(s)	527, 666
HinfI	GANTC	3 cut(s)	219, 581, 751
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	4 cut(s)	54, 100, 248, 333
Hpy188III	TCNNGA	6 cut(s)	143, 216, 439, 635, 641, 761
Hpy8I	GTNNAC	4 cut(s)	54, 100, 248, 333
HpyCH4III	ACNGT	2 cut(s)	378, 593
HpyCH4V	TGCA	4 cut(s)	38, 347, 721, 810
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 308
HpyF3I	CTNAG	1 cut(s)	525
Hsp92II	CATG	7 cut(s)	244, 601, 680, 689, 706, 764, 797
Kzo9I	GATC	4 cut(s)	139, 145, 212, 637
LmnI	GCTCC	3 cut(s)	187, 296, 316
MabI	ACCWGGT	3 cut(s)	121, 555, 769
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	2 cut(s)	593, 712
MalI	GATC	4 cut(s)	141, 147, 214, 639
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	4 cut(s)	139, 145, 212, 637
MboII	GAAGA	4 cut(s)	61, 98, 175, 707
MflI	RGATCY	2 cut(s)	212, 637
MluCI	AATT	6 cut(s)	78, 200, 228, 322, 575, 623
MlyI	GAGTC	1 cut(s)	590
MnlI	CCTC	5 cut(s)	178, 278, 291, 530, 642
MseI	TTAA	2 cut(s)	321, 833
MslI	CAYNNNNRTG	2 cut(s)	690, 798
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	6 cut(s)	74, 123, 557, 619, 748, 771
MvaI	CCWGG	6 cut(s)	74, 123, 557, 619, 748, 771
MwoI	GCNNNNNNNGC	2 cut(s)	299, 308
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	4 cut(s)	139, 145, 212, 637
NheI	GCTAGC	1 cut(s)	289
NlaIII	CATG	7 cut(s)	244, 601, 680, 689, 706, 764, 797
NlaIV	GGNNCC	3 cut(s)	214, 616, 708
NmuCI	GTSAC	1 cut(s)	593
NspI	RCATGY	1 cut(s)	797
PagI	TCATGA	1 cut(s)	760
PfeI	GAWTC	2 cut(s)	219, 751
PflMI	CCANNNNNTGG	1 cut(s)	776
PfoI	TCCNGGA	1 cut(s)	72
PinAI	ACCGGT	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
PpuMI	RGGWCCY	1 cut(s)	615
Psp5II	RGGWCCY	1 cut(s)	615
Psp6I	CCWGG	6 cut(s)	72, 121, 555, 617, 746, 769
PspGI	CCWGG	6 cut(s)	72, 121, 555, 617, 746, 769
PspN4I	GGNNCC	3 cut(s)	214, 616, 708
PspPI	GGNCC	3 cut(s)	333, 553, 615
PspPPI	RGGWCCY	1 cut(s)	615
PstNI	CAGNNNCTG	1 cut(s)	776
PsuI	RGATCY	2 cut(s)	212, 637
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	2 cut(s)	690, 798
SaqAI	TTAA	2 cut(s)	321, 833
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	4 cut(s)	139, 145, 212, 637
Sau96I	GGNCC	3 cut(s)	333, 553, 615
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	6 cut(s)	74, 123, 557, 619, 748, 771
SexAI	ACCWGGT	3 cut(s)	121, 555, 769
SinI	GGWCC	3 cut(s)	333, 553, 615
SmiMI	CAYNNNNRTG	2 cut(s)	690, 798
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	6 cut(s)	78, 200, 228, 322, 575, 623
SsiI	CCGC	2 cut(s)	299, 462
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	6 cut(s)	72, 121, 555, 617, 746, 769
StyI	CCWWGG	2 cut(s)	240, 422
TaaI	ACNGT	2 cut(s)	378, 593
TaqI	TCGA	1 cut(s)	579
TasI	AATT	6 cut(s)	78, 200, 228, 322, 575, 623
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	2 cut(s)	219, 751
Tru1I	TTAA	2 cut(s)	321, 833
Tru9I	TTAA	2 cut(s)	321, 833
TseFI	GTSAC	1 cut(s)	593
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	5 cut(s)	213, 614, 665, 678, 708
Van91I	CCANNNNNTGG	1 cut(s)	776
VpaK11BI	GGWCC	3 cut(s)	333, 553, 615
XapI	RAATTY	2 cut(s)	575, 623
XceI	RCATGY	1 cut(s)	797
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.