Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000873

Physical Location & Seq

Genomic Coordinates Reverse (-)

6023011 .. 6025218

Gene Structure 2208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1064200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGATGTTTAACAGGATCGCATTCATCTTGTTGGTTGGATTGCTGGCGTGGGCACATCAGGCCGCCCGACCACCCCCTCCGAACATCTGTGGTTCGCCTGGCGGTCCACCTGTCACAGCGCCTAGAATAAGGCTAAGGGATGGAAGATTTTTGGCCTACAAGGAACATGGTGTTCCAAAACAAGTGGCCAAGTATAAGATTATCTTTGTTCATCCCTTCGGTACTTCCCGACATGATCCAGTCATTGCAACATCTGTCTCTCCGGAAGTTATTGAAGATTTAGGTGTGTACATTGTGTCTTTCGACAGACCAGGGTACGGTGAAAGTGATCCGGATCCTAAGCGAACAACGAAGAGCTTGGCGTTAGATATAGAGGAGCTTGGTGATCAGCTGGAACTCGGATCCAAATTTTATGTGATTGGATACTCAATGGGAGGACAGTGCATCTGGAAGTGTCTTCAGTACATCCCTCATAGGCTAGCAGGAGCAGTGCTGATCGCTCCGGTGATCAACTACTGGTGGCCAGGACTTCCTGCCAACTTGTCATCTTATGCCTATAAGAAGCAACCTCCGCAGGATCAATGGGCGCTTCGAGCTGCTCACTATATACCTTGGTTAACCTACTGGTGGAACACTCAGAATTTCTTTCCTAAATCCAGCGTTGTATCCGGAAAACCAGAGAATATGTTTTCCCGCCAAGATTGGGAAATCATTAGGAATGGAAAGGTTTCTGGAAGCGAAAAGCACAAGGCACATGTCACGCAGCAAGGAGAAGCTGAGTCCATCTTTCGTGACATGATTGTTGGATTTGGGAGCTGGGAATTTGGTCCTATGGATCTGAAGAACCCTTTTGCCAGCAATGAACGCTCGGTCCATCTATGGCAGGGTGACGAAGATAAGCTTGTCCCAGTAGAGCTGCAACGCTATATTGCCGAAAAGCTTCCATGGATTCACTACCATGAGGTACCAGGTGGTGGACATTTGTTGCCAGCTGCAGATGGTATGAGTGAGGTCATCTTAAAGGCACTTCTAATTAGAGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

349

Amino Acids

39.28

Weight (kDa)

8.28

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	67 - 329	3.2e-15	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	67 - 331	5.2e-15	Alpha/beta hydrolase family
Hydrolase_4	PF12146	94 - 181	2.8e-07	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74300 AT1G74300 AT2G36290 AT2G36290
fragaria_vesca	FvH4_6g18490 FvH4_6g18490 FvH4_6g18490 FvH4_7g05600 FvH4_7g05600
malus_domestica	MD07G1064200.v1.1 MD07G1064400.v1.1 MD07G1064600.v1.1 MD07G1065000.v1.1 MD07G1065100.v1.1 MD07G1065200.v1.1 MD07G1065300.v1.1 MD12G1024000.v1.1 MD14G1021400.v1.1
prunus_persica	Prupe.2G079000_v2.0.a1 Prupe.2G079000_v2.0.a1 Prupe.2G079000_v2.0.a1 Prupe.7G112400_v2.0.a1
pyrus_communis	pycom07g04990 pycom12g02260 pycom14g02080
rosa_chinensis	RchiOBHm_Chr1g0332431 RchiOBHm_Chr1g0332511 RchiOBHm_Chr1g0332561 RchiOBHm_Chr3g0473031
rosa_laevigata	RLG00000024036 RLG00000029596 RLG00000029656 RLG00000029665 RLG00000029670
rosa_multiflora	Rmu_sc0002307.1_g000026 Rmu_sc0006336.1_g000009 Rmu_sc0007458.1_g000015 Rmu_ssc0000161.1_g000006
rosa_roxburghii	Rroxscaffold_4G00318150 Rroxscaffold_4G00318180 Rroxscaffold_6G00408360
rosa_rugosa	Rorug01G0100700 Rorug01G0100800 Rorug01G0100900 Rorug01G0101600 Rorug01G0101600 Rorug03G0130800
rosa_samantha	Rh1AG124900 Rh1AG126000 Rh1AG126200 Rh1BG095300 Rh1CG119000 Rh1CG119900 Rh1CG120100 Rh1DG129800 Rh1DG130300 Rh1DG130400 Rh3AG182600 Rh3BG208900 Rh3CG206000 Rh3DG206000
rosa_wichuraiana	Rw0G002590 Rw1G010150 Rw1G010180 Rw1G010700 Rw3G016050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	964
AccB1I	GGYRCC	1 cut(s)	964
AccB7I	CCANNNNNTGG	1 cut(s)	974
AccIII	TCCGGA	3 cut(s)	262, 331, 668
AciI	CCGC	4 cut(s)	63, 102, 572, 694
AclWI	GGATC	9 cut(s)	23, 230, 323, 329, 342, 396, 409, 585, 843
AcoI	YGGCCR	2 cut(s)	186, 521
AcsI	RAATTY	3 cut(s)	407, 640, 821
AcuI	CTGAAG	2 cut(s)	443, 860
AfaI	GTAC	5 cut(s)	223, 290, 317, 464, 966
AfiI	CCNNNNNNNGG	4 cut(s)	317, 627, 703, 974
AflIII	ACRYGT	1 cut(s)	754
AgsI	TTSAA	1 cut(s)	275
AjnI	CCWGG	4 cut(s)	97, 310, 523, 967
AloI	GAACNNNNNNTCC	2 cut(s)	855, 887
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	9 cut(s)	23, 230, 323, 329, 342, 396, 409, 585, 843
Aor13HI	TCCGGA	3 cut(s)	262, 331, 668
AoxI	GGCC	4 cut(s)	60, 153, 186, 521
ApeKI	GCWGC	4 cut(s)	596, 763, 916, 992
ApoI	RAATTY	3 cut(s)	407, 640, 821
Asp700I	GAANNNNTTC	2 cut(s)	727, 939
Asp718I	GGTACC	1 cut(s)	964
AspLEI	GCGC	2 cut(s)	121, 589
AspS9I	GGNCC	3 cut(s)	104, 827, 871
AsuHPI	GGTGA	4 cut(s)	332, 395, 517, 899
AsuNHI	GCTAGC	1 cut(s)	478
AvaII	GGWCC	3 cut(s)	104, 827, 871
BaeGI	GKGCMC	1 cut(s)	55
BalI	TGGCCA	2 cut(s)	188, 523
BamHI	GGATCC	2 cut(s)	334, 401
BanI	GGYRCC	1 cut(s)	964
BbsI	GAAGAC	1 cut(s)	449
BbvI	GCAGC	4 cut(s)	583, 775, 903, 979
BccI	CCATC	4 cut(s)	134, 791, 882, 992
BciT130I	CCWGG	4 cut(s)	99, 312, 525, 969
BciVI	GTATCC	2 cut(s)	416, 676
BclI	TGATCA	2 cut(s)	385, 507
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	2 cut(s)	123, 479
BfmI	CTRYAG	1 cut(s)	993
BfoI	RGCGCY	2 cut(s)	122, 590
BfuI	GTATCC	2 cut(s)	416, 676
BisI	GCNGC	5 cut(s)	63, 597, 764, 917, 993
BlsI	GCNGC	5 cut(s)	64, 598, 765, 918, 994
Bme1390I	CCNGG	4 cut(s)	99, 312, 525, 969
Bme18I	GGWCC	3 cut(s)	104, 827, 871
BmgT120I	GGNCC	3 cut(s)	104, 827, 871
BmiI	GGNNCC	3 cut(s)	336, 403, 966
BmrFI	CCNGG	4 cut(s)	99, 312, 525, 969
BmrI	ACTGGG	1 cut(s)	902
BmsI	GCATC	1 cut(s)	453
BmtI	GCTAGC	1 cut(s)	482
BmuI	ACTGGG	1 cut(s)	902
BpiI	GAAGAC	1 cut(s)	449
Bpu10I	CCTNAGC	2 cut(s)	134, 339
BsaBI	GATNNNNATC	1 cut(s)	333
BsaJI	CCNNGG	3 cut(s)	311, 611, 944
BsaWI	WCCGGW	4 cut(s)	262, 331, 502, 668
Bsc4I	CCNNNNNNNGG	4 cut(s)	317, 627, 703, 974
Bse1I	ACTGG	4 cut(s)	239, 521, 629, 908
Bse3DI	GCAATG	2 cut(s)	243, 865
Bse8I	GATNNNNATC	1 cut(s)	333
BseAI	TCCGGA	3 cut(s)	262, 331, 668
BseBI	CCWGG	4 cut(s)	99, 312, 525, 969
BseDI	CCNNGG	3 cut(s)	311, 611, 944
BseGI	GGATG	3 cut(s)	145, 211, 465
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	4 cut(s)	317, 627, 703, 974
BseMI	GCAATG	2 cut(s)	243, 865
BseMII	CTCAG	2 cut(s)	650, 768
BseNI	ACTGG	4 cut(s)	239, 521, 629, 908
BseRI	GAGGAG	1 cut(s)	389
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	4 cut(s)	583, 775, 903, 979
BseYI	CCCAGC	1 cut(s)	816
BshFI	GGCC	4 cut(s)	62, 155, 188, 523
BshNI	GGYRCC	1 cut(s)	964
BsiSI	CCGG	4 cut(s)	263, 332, 503, 669
BslFI	GGGAC	1 cut(s)	890
BslI	CCNNNNNNNGG	4 cut(s)	317, 627, 703, 974
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	890
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	4 cut(s)	62, 155, 188, 523
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp13I	TCCGGA	3 cut(s)	262, 331, 668
Bsp1407I	TGTACA	1 cut(s)	288
Bsp19I	CCATGG	1 cut(s)	944
BspACI	CCGC	4 cut(s)	63, 102, 572, 694
BspANI	GGCC	4 cut(s)	62, 155, 188, 523
BspCNI	CTCAG	2 cut(s)	649, 769
BspEI	TCCGGA	3 cut(s)	262, 331, 668
BspLI	GGNNCC	3 cut(s)	336, 403, 966
BspMAI	CTGCAG	1 cut(s)	997
BspOI	GCTAGC	1 cut(s)	482
BspPI	GGATC	9 cut(s)	23, 230, 323, 329, 342, 396, 409, 585, 843
BspQI	GCTCTTC	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	964
BsrDI	GCAATG	2 cut(s)	243, 865
BsrGI	TGTACA	1 cut(s)	288
BsrI	ACTGG	4 cut(s)	239, 521, 629, 908
BssECI	CCNNGG	3 cut(s)	311, 611, 944
BssT1I	CCWWGG	2 cut(s)	611, 944
Bst2UI	CCWGG	4 cut(s)	99, 312, 525, 969
Bst4CI	ACNGT	2 cut(s)	320, 441
Bst6I	CTCTTC	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	288
BstC8I	GCNNGC	4 cut(s)	45, 480, 856, 990
BstDEI	CTNAG	4 cut(s)	134, 339, 636, 777
BstDSI	CCRYGG	1 cut(s)	944
BstF5I	GGATG	3 cut(s)	145, 211, 465
BstH2I	RGCGCY	2 cut(s)	122, 590
BstHHI	GCGC	2 cut(s)	121, 589
BstMAI	GTCTC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 571, 593, 864
BstNI	CCWGG	4 cut(s)	99, 312, 525, 969
BstNSI	RCATGY	1 cut(s)	758
BstSCI	CCNGG	4 cut(s)	97, 310, 523, 967
BstSFI	CTRYAG	1 cut(s)	993
BstSLI	GKGCMC	1 cut(s)	55
BstV1I	GCAGC	4 cut(s)	583, 775, 903, 979
BstV2I	GAAGAC	1 cut(s)	449
BstX2I	RGATCY	3 cut(s)	334, 401, 835
BstYI	RGATCY	3 cut(s)	334, 401, 835
BsuI	GTATCC	2 cut(s)	416, 676
BsuRI	GGCC	4 cut(s)	62, 155, 188, 523
BtgI	CCRYGG	1 cut(s)	944
BtsCI	GGATG	3 cut(s)	145, 211, 465
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	2 cut(s)	446, 495
Cac8I	GCNNGC	4 cut(s)	45, 480, 856, 990
CfoI	GCGC	2 cut(s)	121, 589
Cfr13I	GGNCC	3 cut(s)	104, 827, 871
CsiI	ACCWGGT	1 cut(s)	967
Csp6I	GTAC	5 cut(s)	222, 289, 316, 463, 965
CspCI	CAANNNNNGTGG	2 cut(s)	165, 200
CviAII	CATG	6 cut(s)	167, 233, 755, 796, 945, 959
CviQI	GTAC	5 cut(s)	222, 289, 316, 463, 965
DdeI	CTNAG	4 cut(s)	134, 339, 636, 777
EaeI	YGGCCR	2 cut(s)	186, 521
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
Eco130I	CCWWGG	2 cut(s)	611, 944
Eco47I	GGWCC	3 cut(s)	104, 827, 871
Eco57I	CTGAAG	2 cut(s)	443, 860
EcoRII	CCWGG	4 cut(s)	97, 310, 523, 967
EcoT14I	CCWWGG	2 cut(s)	611, 944
ErhI	CCWWGG	2 cut(s)	611, 944
FaeI	CATG	6 cut(s)	170, 236, 758, 799, 948, 962
FalI	AAGNNNNNCTT	4 cut(s)	188, 220, 885, 917
FaqI	GGGAC	1 cut(s)	890
FatI	CATG	6 cut(s)	166, 232, 754, 795, 944, 958
FauI	CCCGC	1 cut(s)	701
FbaI	TGATCA	2 cut(s)	385, 507
Fnu4HI	GCNGC	5 cut(s)	63, 597, 764, 917, 993
FokI	GGATG	3 cut(s)	152, 198, 452
Fsp4HI	GCNGC	5 cut(s)	63, 597, 764, 917, 993
FspBI	CTAG	2 cut(s)	123, 479
GlaI	GCGC	2 cut(s)	120, 588
GluI	GCNGC	5 cut(s)	63, 597, 764, 917, 993
GsaI	CCCAGC	1 cut(s)	820
HaeII	RGCGCY	2 cut(s)	122, 590
HaeIII	GGCC	4 cut(s)	62, 155, 188, 523
HapII	CCGG	4 cut(s)	263, 332, 503, 669
HhaI	GCGC	2 cut(s)	121, 589
Hin1II	CATG	6 cut(s)	170, 236, 758, 799, 948, 962
Hin6I	GCGC	2 cut(s)	119, 587
HinP1I	GCGC	2 cut(s)	119, 587
HincII	GTYRAC	1 cut(s)	618
HindII	GTYRAC	1 cut(s)	618
HindIII	AAGCTT	2 cut(s)	899, 938
HinfI	GANTC	2 cut(s)	779, 949
HpaI	GTTAAC	1 cut(s)	618
HpaII	CCGG	4 cut(s)	263, 332, 503, 669
HphI	GGTGA	4 cut(s)	332, 395, 517, 899
Hpy166II	GTNNAC	4 cut(s)	107, 289, 618, 977
Hpy188I	TCNGA	4 cut(s)	81, 401, 639, 840
Hpy188III	TCNNGA	7 cut(s)	228, 263, 332, 448, 669, 732, 791
Hpy8I	GTNNAC	4 cut(s)	107, 289, 618, 977
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	2 cut(s)	320, 441
HpyCH4V	TGCA	4 cut(s)	248, 444, 919, 995
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 571, 593, 864
HpyF3I	CTNAG	4 cut(s)	134, 339, 636, 777
Hsp92II	CATG	6 cut(s)	170, 236, 758, 799, 948, 962
HspAI	GCGC	2 cut(s)	119, 587
Kpn2I	TCCGGA	3 cut(s)	262, 331, 668
KpnI	GGTACC	1 cut(s)	968
Ksp22I	TGATCA	2 cut(s)	385, 507
KspAI	GTTAAC	1 cut(s)	618
LguI	GCTCTTC	1 cut(s)	347
LmnI	GCTCC	4 cut(s)	376, 485, 505, 813
Lsp1109I	GCAGC	4 cut(s)	583, 775, 903, 979
LweI	GCATC	1 cut(s)	453
MabI	ACCWGGT	1 cut(s)	967
MaeI	CTAG	2 cut(s)	123, 479
MaeIII	GTNAC	4 cut(s)	112, 757, 791, 887
MboII	GAAGA	6 cut(s)	156, 287, 364, 449, 853, 905
MflI	RGATCY	3 cut(s)	334, 401, 835
MhlI	GDGCHC	1 cut(s)	55
MlsI	TGGCCA	2 cut(s)	188, 523
MluCI	AATT	4 cut(s)	407, 640, 821, 1032
MluNI	TGGCCA	2 cut(s)	188, 523
MlyI	GAGTC	1 cut(s)	788
MmeI	TCCRAC	2 cut(s)	16, 784
MnlI	CCTC	7 cut(s)	87, 367, 428, 480, 579, 955, 1003
Mox20I	TGGCCA	2 cut(s)	188, 523
MroI	TCCGGA	3 cut(s)	262, 331, 668
MroXI	GAANNNNTTC	2 cut(s)	727, 939
MscI	TGGCCA	2 cut(s)	188, 523
MseI	TTAA	3 cut(s)	9, 617, 1019
MslI	CAYNNNNRTG	1 cut(s)	957
Msp20I	TGGCCA	2 cut(s)	188, 523
MspA1I	CMGCKG	2 cut(s)	391, 992
MspI	CCGG	4 cut(s)	263, 332, 503, 669
MspR9I	CCNGG	4 cut(s)	99, 312, 525, 969
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	4 cut(s)	99, 312, 525, 969
MwoI	GCNNNNNNNGC	4 cut(s)	59, 571, 593, 864
NcoI	CCATGG	1 cut(s)	944
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	6 cut(s)	170, 236, 758, 799, 948, 962
NlaIV	GGNNCC	3 cut(s)	336, 403, 966
NmuCI	GTSAC	4 cut(s)	112, 757, 791, 887
NspI	RCATGY	1 cut(s)	758
PciI	ACATGT	1 cut(s)	754
PciSI	GCTCTTC	1 cut(s)	347
PctI	GAATGC	1 cut(s)	20
PdmI	GAANNNNTTC	2 cut(s)	727, 939
PfeI	GAWTC	1 cut(s)	949
PflMI	CCANNNNNTGG	1 cut(s)	974
PkrI	GCNGC	5 cut(s)	64, 598, 765, 918, 994
PleI	GAGTC	1 cut(s)	787
PpsI	GAGTC	1 cut(s)	787
PscI	ACATGT	1 cut(s)	754
Psp6I	CCWGG	4 cut(s)	97, 310, 523, 967
PspFI	CCCAGC	1 cut(s)	816
PspGI	CCWGG	4 cut(s)	97, 310, 523, 967
PspN4I	GGNNCC	3 cut(s)	336, 403, 966
PspPI	GGNCC	3 cut(s)	104, 827, 871
PstI	CTGCAG	1 cut(s)	997
PsuI	RGATCY	3 cut(s)	334, 401, 835
PvuII	CAGCTG	2 cut(s)	391, 992
RsaI	GTAC	5 cut(s)	223, 290, 317, 464, 966
RsaNI	GTAC	5 cut(s)	222, 289, 316, 463, 965
RseI	CAYNNNNRTG	1 cut(s)	957
SapI	GCTCTTC	1 cut(s)	347
SaqAI	TTAA	3 cut(s)	9, 617, 1019
SatI	GCNGC	5 cut(s)	63, 597, 764, 917, 993
Sau96I	GGNCC	3 cut(s)	104, 827, 871
SchI	GAGTC	1 cut(s)	788
ScrFI	CCNGG	4 cut(s)	99, 312, 525, 969
SduI	GDGCHC	1 cut(s)	55
SexAI	ACCWGGT	1 cut(s)	967
SfaNI	GCATC	1 cut(s)	453
SfcI	CTRYAG	1 cut(s)	993
SinI	GGWCC	3 cut(s)	104, 827, 871
SmiMI	CAYNNNNRTG	1 cut(s)	957
Sse9I	AATT	4 cut(s)	407, 640, 821, 1032
SsiI	CCGC	4 cut(s)	63, 102, 572, 694
SspMI	CTAG	2 cut(s)	123, 479
StyD4I	CCNGG	4 cut(s)	97, 310, 523, 967
StyI	CCWWGG	2 cut(s)	611, 944
TaaI	ACNGT	2 cut(s)	320, 441
TaqI	TCGA	2 cut(s)	303, 592
TaqII	GACCGA	1 cut(s)	859
TasI	AATT	4 cut(s)	407, 640, 821, 1032
TatI	WGTACW	2 cut(s)	288, 462
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	949
Tru1I	TTAA	3 cut(s)	9, 617, 1019
Tru9I	TTAA	3 cut(s)	9, 617, 1019
TscAI	CASTG	2 cut(s)	446, 495
TseFI	GTSAC	4 cut(s)	112, 757, 791, 887
TseI	GCWGC	4 cut(s)	596, 763, 916, 992
Tsp45I	GTSAC	4 cut(s)	112, 757, 791, 887
TspDTI	ATGAA	3 cut(s)	13, 200, 876
TspRI	CASTG	2 cut(s)	446, 495
Van91I	CCANNNNNTGG	1 cut(s)	974
VpaK11BI	GGWCC	3 cut(s)	104, 827, 871
XapI	RAATTY	3 cut(s)	407, 640, 821
XceI	RCATGY	1 cut(s)	758
XmnI	GAANNNNTTC	2 cut(s)	727, 939
XspI	CTAG	2 cut(s)	123, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.