Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000873

Physical Location & Seq

Genomic Coordinates Forward (+)

18822579 .. 18830189

Gene Structure 7611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG208900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTTTAGGACAACACTGGTGGTGTTGTTTATGGGGTTTCTGGCATGGGCATATCAGGCCATCCAACCTCCTCCACCAAAGATTTGTGGCTCTCCTGATGGCCCTCCTGTTACAGCACCAAGAATAAAACTTAGGGATGGAAGGCATTTAGCCTATCAAGAGCATGGGGTCCCAAAAGAAAATGCTCAGTATAAAATTGTTTATGTCCATGGTATTGATTCTTGCAGACATGATGCTGTTGCTGCACAAACCCTATCTCCAGAAATTGTTGAAGACTTGGGTGTCTACTTTGTGTCTTTTGACAGACCTGGTTATGGAGAGAGTGATCCTGATCCAAATAGAACAGCAAAGAGTATGGCTTTAGATATAGAGGAGCTGGCTGATGAATTAGGATTAGGATCCAGATTCTATGTAATTGGTTTTTCCATGGGTGGACAGGTTCTTTGGGGTTGCCTCAAGTACATCCCTCACAGGCTAGCAGGAGCGGCACTATTAGCTCCAGTTGTTAATTACTGGTGGACCGGTATTCCTGCAAATCTATCTAACGAAGCATACCACCAACAGTTTCAGCAAGACCAGTGGGCAGTTCGTGTTTCTCACTACACCCCTTGGCTTACCTATTTCTGGAACACTCAAAAATGGTTTCCCGCTTCAAGTGTTATGGCTCACAGCACAGATATTCTTTCTCAACAAGACAAAGAACTCCTCCCTAAGCTTTTCAAAAGAAAACCATATATGGACCAGGTAAGACAGCAAGGAGAATTCGAGTCCATTCACCGTGACATGAATCTTGGATTTGGGACCTGGGAATTCAGTCCTCTGGATCTGGAAAATCCTTTTCCAAACAATGAAGCTTCTGTTCATGTGTGGCATGGAGATGAAGATAACATGGTTCCTGTTACTCTGCAACGATACATTGCCCAACAACTTCCCTGGATTCAATATCATGAGATACCAGGTGCTGGACACTTGTTCCCACATGCTGATGGGATGTGCAATACCATTGTCAAGGCACTTTTAACTGATGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

344

Amino Acids

39.13

Weight (kDa)

5.65

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	66 - 328	5.1e-16	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	89 - 325	1.2e-13	alpha/beta hydrolase fold
Hydrolase_4	PF12146	91 - 324	1.7e-07	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74300 AT1G74300 AT2G36290 AT2G36290
fragaria_vesca	FvH4_6g18490 FvH4_6g18490 FvH4_6g18490 FvH4_7g05600 FvH4_7g05600
malus_domestica	MD07G1064200.v1.1 MD07G1064400.v1.1 MD07G1064600.v1.1 MD07G1065000.v1.1 MD07G1065100.v1.1 MD07G1065200.v1.1 MD07G1065300.v1.1 MD12G1024000.v1.1 MD14G1021400.v1.1
prunus_persica	Prupe.2G079000_v2.0.a1 Prupe.2G079000_v2.0.a1 Prupe.2G079000_v2.0.a1 Prupe.7G112400_v2.0.a1
pyrus_communis	pycom07g04990 pycom12g02260 pycom14g02080
rosa_chinensis	RchiOBHm_Chr1g0332431 RchiOBHm_Chr1g0332511 RchiOBHm_Chr1g0332561 RchiOBHm_Chr3g0473031
rosa_laevigata	RLG00000024036 RLG00000029596 RLG00000029656 RLG00000029665 RLG00000029670
rosa_multiflora	Rmu_sc0002307.1_g000026 Rmu_sc0006336.1_g000009 Rmu_sc0007458.1_g000015 Rmu_ssc0000161.1_g000006
rosa_roxburghii	Rroxscaffold_4G00318150 Rroxscaffold_4G00318180 Rroxscaffold_6G00408360
rosa_rugosa	Rorug01G0100700 Rorug01G0100800 Rorug01G0100900 Rorug01G0101600 Rorug01G0101600 Rorug03G0130800
rosa_samantha	Rh1AG124900 Rh1AG126000 Rh1AG126200 Rh1BG095300 Rh1CG119000 Rh1CG119900 Rh1CG120100 Rh1DG129800 Rh1DG130300 Rh1DG130400 Rh3AG182600 Rh3BG208900 Rh3CG206000 Rh3DG206000
rosa_wichuraiana	Rw0G002590 Rw1G010150 Rw1G010180 Rw1G010700 Rw3G016050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AccB7I	CCANNNNNTGG	1 cut(s)	962
AccBSI	CCGCTC	1 cut(s)	485
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	2 cut(s)	485, 648
AclWI	GGATC	5 cut(s)	320, 326, 393, 406, 831
AcsI	RAATTY	2 cut(s)	761, 809
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	3 cut(s)	314, 624, 962
AgeI	ACCGGT	1 cut(s)	521
AgsI	TTSAA	4 cut(s)	272, 654, 721, 941
AjnI	CCWGG	5 cut(s)	307, 741, 803, 932, 955
AluBI	AGCT	4 cut(s)	376, 497, 715, 854
AluI	AGCT	4 cut(s)	376, 497, 715, 854
AlwI	GGATC	5 cut(s)	320, 326, 393, 406, 831
AlwNI	CAGNNNCTG	1 cut(s)	962
AoxI	GGCC	2 cut(s)	57, 100
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	2 cut(s)	761, 809
ArsI	GACNNNNNNTTYG	2 cut(s)	426, 458
AsiGI	ACCGGT	1 cut(s)	521
AspS9I	GGNCC	5 cut(s)	101, 169, 519, 739, 801
AsuHPI	GGTGA	1 cut(s)	767
AsuNHI	GCTAGC	1 cut(s)	475
AvaII	GGWCC	4 cut(s)	169, 519, 739, 801
BamHI	GGATCC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	4 cut(s)	68, 92, 131, 980
BciT130I	CCWGG	5 cut(s)	309, 743, 805, 934, 957
BfaI	CTAG	1 cut(s)	476
BisI	GCNGC	2 cut(s)	243, 486
BlsI	GCNGC	2 cut(s)	244, 487
Bme1390I	CCNGG	5 cut(s)	309, 743, 805, 934, 957
Bme18I	GGWCC	4 cut(s)	169, 519, 739, 801
BmgT120I	GGNCC	5 cut(s)	101, 169, 519, 739, 801
BmiI	GGNNCC	5 cut(s)	170, 171, 400, 802, 894
BmrFI	CCNGG	5 cut(s)	309, 743, 805, 934, 957
BmsI	GCATC	1 cut(s)	223
BmtI	GCTAGC	1 cut(s)	479
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	2 cut(s)	243, 483
Bpu10I	CCTNAGC	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	440
BsaBI	GATNNNNATC	2 cut(s)	330, 397
BsaJI	CCNNGG	5 cut(s)	208, 426, 608, 804, 932
BsaWI	WCCGGW	1 cut(s)	521
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 624, 962
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	4 cut(s)	21, 500, 518, 577
Bse3DI	GCAATG	1 cut(s)	915
Bse8I	GATNNNNATC	2 cut(s)	330, 397
BseBI	CCWGG	5 cut(s)	309, 743, 805, 934, 957
BseDI	CCNNGG	5 cut(s)	208, 426, 608, 804, 932
BseGI	GGATG	4 cut(s)	60, 142, 462, 996
BseJI	GATNNNNATC	2 cut(s)	330, 397
BseLI	CCNNNNNNNGG	3 cut(s)	314, 624, 962
BseMI	GCAATG	1 cut(s)	915
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	4 cut(s)	21, 500, 518, 577
BseRI	GAGGAG	3 cut(s)	60, 386, 695
BseXI	GCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	59, 102
BshTI	ACCGGT	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	2 cut(s)	155, 814
BslI	CCNNNNNNNGG	3 cut(s)	314, 624, 962
BsmFI	GGGAC	2 cut(s)	155, 814
BsnI	GGCC	2 cut(s)	59, 102
Bsp143I	GATC	4 cut(s)	325, 331, 398, 823
Bsp19I	CCATGG	2 cut(s)	208, 426
BspACI	CCGC	2 cut(s)	485, 648
BspANI	GGCC	2 cut(s)	59, 102
BspCNI	CTCAG	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	946
BspLI	GGNNCC	5 cut(s)	170, 171, 400, 802, 894
BspOI	GCTAGC	1 cut(s)	479
BspPI	GGATC	5 cut(s)	320, 326, 393, 406, 831
BsrBI	CCGCTC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	915
BsrFI	RCCGGY	1 cut(s)	521
BsrI	ACTGG	4 cut(s)	21, 500, 518, 577
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	5 cut(s)	208, 426, 608, 804, 932
BssMI	GATC	4 cut(s)	325, 331, 398, 823
BssT1I	CCWWGG	3 cut(s)	208, 426, 608
Bst2UI	CCWGG	5 cut(s)	309, 743, 805, 934, 957
Bst4CI	ACNGT	2 cut(s)	564, 779
BstC8I	GCNNGC	2 cut(s)	378, 477
BstDEI	CTNAG	3 cut(s)	131, 186, 711
BstDSI	CCRYGG	2 cut(s)	208, 426
BstF5I	GGATG	4 cut(s)	60, 142, 462, 996
BstKTI	GATC	4 cut(s)	328, 334, 401, 826
BstMBI	GATC	4 cut(s)	325, 331, 398, 823
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 242, 485, 494
BstNI	CCWGG	5 cut(s)	309, 743, 805, 934, 957
BstNSI	RCATGY	1 cut(s)	983
BstSCI	CCNGG	5 cut(s)	307, 741, 803, 932, 955
BstV1I	GCAGC	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	2 cut(s)	398, 823
BstYI	RGATCY	2 cut(s)	398, 823
BsuRI	GGCC	2 cut(s)	59, 102
BtgI	CCRYGG	2 cut(s)	208, 426
BtsCI	GGATG	4 cut(s)	60, 142, 462, 996
BtsIMutI	CAGTG	2 cut(s)	14, 584
Cac8I	GCNNGC	2 cut(s)	378, 477
CaiI	CAGNNNCTG	1 cut(s)	962
CciI	TCATGA	1 cut(s)	946
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	5 cut(s)	101, 169, 519, 739, 801
CsiI	ACCWGGT	3 cut(s)	307, 741, 955
Csp6I	GTAC	1 cut(s)	460
CspAI	ACCGGT	1 cut(s)	521
CspCI	CAANNNNNGTGG	3 cut(s)	35, 560, 595
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	3 cut(s)	131, 186, 711
DpnI	GATC	4 cut(s)	327, 333, 400, 825
DpnII	GATC	4 cut(s)	325, 331, 398, 823
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
Eco130I	CCWWGG	3 cut(s)	208, 426, 608
Eco47I	GGWCC	4 cut(s)	169, 519, 739, 801
EcoO109I	RGGNCCY	2 cut(s)	169, 801
EcoRI	GAATTC	2 cut(s)	761, 809
EcoRII	CCWGG	5 cut(s)	307, 741, 803, 932, 955
EcoT14I	CCWWGG	3 cut(s)	208, 426, 608
ErhI	CCWWGG	3 cut(s)	208, 426, 608
FaqI	GGGAC	2 cut(s)	155, 814
FauI	CCCGC	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	243, 486
FokI	GGATG	4 cut(s)	47, 149, 449, 1003
Fsp4HI	GCNGC	2 cut(s)	243, 486
FspBI	CTAG	1 cut(s)	476
GluI	GCNGC	2 cut(s)	243, 486
GsuI	CTGGAG	2 cut(s)	243, 483
HaeIII	GGCC	2 cut(s)	59, 102
HapII	CCGG	1 cut(s)	522
HindIII	AAGCTT	2 cut(s)	713, 852
HinfI	GANTC	5 cut(s)	218, 405, 767, 787, 937
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	1 cut(s)	767
Hpy166II	GTNNAC	3 cut(s)	286, 434, 519
Hpy188III	TCNNGA	9 cut(s)	95, 158, 260, 329, 402, 625, 821, 827, 947
Hpy8I	GTNNAC	3 cut(s)	286, 434, 519
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	2 cut(s)	564, 779
HpyCH4V	TGCA	5 cut(s)	225, 245, 533, 907, 996
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 242, 485, 494
HpyF3I	CTNAG	3 cut(s)	131, 186, 711
KflI	GGGWCCC	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	325, 331, 398, 823
LmnI	GCTCC	3 cut(s)	373, 482, 502
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	1 cut(s)	223
MabI	ACCWGGT	3 cut(s)	307, 741, 955
MaeI	CTAG	1 cut(s)	476
MaeIII	GTNAC	3 cut(s)	109, 779, 898
MalI	GATC	4 cut(s)	327, 333, 400, 825
MbiI	CCGCTC	1 cut(s)	485
MboI	GATC	4 cut(s)	325, 331, 398, 823
MboII	GAAGA	2 cut(s)	284, 893
MflI	RGATCY	2 cut(s)	398, 823
MluCI	AATT	7 cut(s)	195, 264, 386, 414, 508, 761, 809
MlyI	GAGTC	1 cut(s)	776
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	8 cut(s)	78, 81, 114, 364, 464, 477, 716, 828
MseI	TTAA	2 cut(s)	507, 1019
MslI	CAYNNNNRTG	2 cut(s)	876, 984
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	5 cut(s)	309, 743, 805, 934, 957
MvaI	CCWGG	5 cut(s)	309, 743, 805, 934, 957
MwoI	GCNNNNNNNGC	4 cut(s)	56, 242, 485, 494
NcoI	CCATGG	2 cut(s)	208, 426
NdeII	GATC	4 cut(s)	325, 331, 398, 823
NheI	GCTAGC	1 cut(s)	475
NlaIV	GGNNCC	5 cut(s)	170, 171, 400, 802, 894
NmuCI	GTSAC	1 cut(s)	779
NspI	RCATGY	1 cut(s)	983
PagI	TCATGA	1 cut(s)	946
PfeI	GAWTC	4 cut(s)	218, 405, 787, 937
PflMI	CCANNNNNTGG	1 cut(s)	962
PinAI	ACCGGT	1 cut(s)	521
PkrI	GCNGC	2 cut(s)	244, 487
PleI	GAGTC	1 cut(s)	775
PpsI	GAGTC	1 cut(s)	775
PpuMI	RGGWCCY	2 cut(s)	169, 801
Psp5II	RGGWCCY	2 cut(s)	169, 801
Psp6I	CCWGG	5 cut(s)	307, 741, 803, 932, 955
PspGI	CCWGG	5 cut(s)	307, 741, 803, 932, 955
PspN4I	GGNNCC	5 cut(s)	170, 171, 400, 802, 894
PspPI	GGNCC	5 cut(s)	101, 169, 519, 739, 801
PspPPI	RGGWCCY	2 cut(s)	169, 801
PstNI	CAGNNNCTG	1 cut(s)	962
PsuI	RGATCY	2 cut(s)	398, 823
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
RseI	CAYNNNNRTG	2 cut(s)	876, 984
SaqAI	TTAA	2 cut(s)	507, 1019
SatI	GCNGC	2 cut(s)	243, 486
Sau3AI	GATC	4 cut(s)	325, 331, 398, 823
Sau96I	GGNCC	5 cut(s)	101, 169, 519, 739, 801
SchI	GAGTC	1 cut(s)	776
ScrFI	CCNGG	5 cut(s)	309, 743, 805, 934, 957
SexAI	ACCWGGT	3 cut(s)	307, 741, 955
SfaNI	GCATC	1 cut(s)	223
SinI	GGWCC	4 cut(s)	169, 519, 739, 801
SmiMI	CAYNNNNRTG	2 cut(s)	876, 984
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	7 cut(s)	195, 264, 386, 414, 508, 761, 809
SsiI	CCGC	2 cut(s)	485, 648
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	5 cut(s)	307, 741, 803, 932, 955
StyI	CCWWGG	3 cut(s)	208, 426, 608
TaaI	ACNGT	2 cut(s)	564, 779
TaqI	TCGA	1 cut(s)	765
TasI	AATT	7 cut(s)	195, 264, 386, 414, 508, 761, 809
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	4 cut(s)	218, 405, 787, 937
Tru1I	TTAA	2 cut(s)	507, 1019
Tru9I	TTAA	2 cut(s)	507, 1019
TscAI	CASTG	2 cut(s)	21, 584
TseFI	GTSAC	1 cut(s)	779
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	779
TspDTI	ATGAA	5 cut(s)	399, 800, 851, 864, 894
TspRI	CASTG	2 cut(s)	21, 584
Van91I	CCANNNNNTGG	1 cut(s)	962
VpaK11BI	GGWCC	4 cut(s)	169, 519, 739, 801
XapI	RAATTY	2 cut(s)	761, 809
XceI	RCATGY	1 cut(s)	983
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.