Rw3G016050

Alpha/beta hydrolase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
16720603 .. 16725849
5247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G016050.1

Sequence Viewer

Length: 1131 bp
ATGGCCGGTGGAGTTAACCGGAAGATATCGGCCGCTTCGGCCAGAGCTCACACCCGAAGAACCAAGCAAAACAGCTCCTTCCGTCTTCCTTCAGGGATGTTTAGGACAACACTGGTGGTGTTGTTTATGGGGTTTCTGGCATGGGCATATCAGGCCATCCAACCTCCTCCACCAAAGATTTGTGGCTCTCCTGATGGCCATCCTGTTACAGCACCAAGAATAAAACTTAGGGATGGAAGGCATTTAGCCTATCAAGAGCATGGGGTCCCAAAAGAAAATGCTCAGTATAAAATTGTTTATGTCCATGGTATCGATTCTTGCAGACATGATGCTGTTGCTGCACAAACCCTATCTCCAGAAATTGTTGAAGACTTGGGTGTCTACTTTGTGTCTTTTGACAGACCTGGTTATGGAGAGAGTGATCCTGATCCAAAGAGAACAGCGAAGAGTATGGCTTTAGATATAGAGGAGCTGGCTGATGAATTAGGATTAGGATCCAGATTCTATGTAATTGGTTTTTCCATGGGTGGACAGGTTCTTTGGGGTTGCCTCAAGTACATCCCTCACAGGCTAGCAGGAGCGGCACTATTAGCTCCAGTTGTTAATTACTGGTGGACCGGAATTCCTGCAAATCTATCTAACGAAGCATACCACCAACAGTTTCAGCAAGACCAATGGGCAGTTCGTGTTTCTCACTACACCCCTTGGCTTACCTATTTCTGGAACACTCAAAAATGGTTTCCCGCTTCAAGTGTTATGGCTCACAGCACAGATATTCTTTCTCAACAAGACAAAGAACTCCTCCCTAAGCTTTTCAAAAGAAAACCATATATGGACCAGGTAAGACAGCAAGGAGAATTCGAGTCCATTCACCGTGACATGAATATTGGATTTGGGACCTGGGAATTCAGTCCTCTGGATCTGGAAAATCCTTTTCCAAACAATGAAGCTTCTGTTCATGTGTGGCATGGAGATGAAGATAACATGGTTCCTGTTACTCTGCAACGATACATTGCCCAACAACTTCCCTGGATTCAATATCATGAGATACCAGGTGCTGGACACTTGTTCCCACATGCTGATGGGATGTGCAATACCATTGTCAAGGCACTTTTATCTGATGACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

376

Amino Acids

42.56

Weight (kDa)

6.59

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 98 - 360 9.2e-16 Alpha/beta hydrolase family
Abhydrolase_1 PF00561 121 - 357 3e-13 alpha/beta hydrolase fold
Hydrolase_4 PF12146 123 - 356 1.7e-07 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AccB7I CCANNNNNTGG 1 cut(s) 1058
AccBSI CCGCTC 1 cut(s) 581
AccI GTMKAC 1 cut(s) 381
AciI CCGC 3 cut(s) 33, 581, 744
AclWI GGATC 5 cut(s) 416, 422, 489, 502, 927
AcoI YGGCCR 4 cut(s) 3, 30, 39, 196
AcsI RAATTY 3 cut(s) 621, 857, 905
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 3 cut(s) 410, 720, 1058
AgsI TTSAA 4 cut(s) 368, 750, 817, 1037
AjnI CCWGG 5 cut(s) 403, 837, 899, 1028, 1051
AjuI GAANNNNNNNTTGG 2 cut(s) 666, 698
AluBI AGCT 6 cut(s) 47, 75, 472, 593, 811, 950
AluI AGCT 6 cut(s) 47, 75, 472, 593, 811, 950
Alw21I GWGCWC 1 cut(s) 49
AlwI GGATC 5 cut(s) 416, 422, 489, 502, 927
AlwNI CAGNNNCTG 1 cut(s) 1058
AoxI GGCC 5 cut(s) 3, 30, 39, 153, 196
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 3 cut(s) 621, 857, 905
ArsI GACNNNNNNTTYG 2 cut(s) 522, 554
AspS9I GGNCC 4 cut(s) 265, 615, 835, 897
AsuHPI GGTGA 1 cut(s) 863
AsuNHI GCTAGC 1 cut(s) 571
AvaII GGWCC 4 cut(s) 265, 615, 835, 897
BalI TGGCCA 1 cut(s) 198
BamHI GGATCC 1 cut(s) 494
BanII GRGCYC 1 cut(s) 49
BbsI GAAGAC 2 cut(s) 77, 375
Bbv12I GWGCWC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 325
BccI CCATC 5 cut(s) 164, 188, 207, 227, 1076
BciT130I CCWGG 5 cut(s) 405, 839, 901, 1030, 1053
BfaI CTAG 1 cut(s) 572
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 3 cut(s) 33, 339, 582
BlsI GCNGC 3 cut(s) 34, 340, 583
Bme1390I CCNGG 5 cut(s) 405, 839, 901, 1030, 1053
Bme18I GGWCC 4 cut(s) 265, 615, 835, 897
BmgT120I GGNCC 4 cut(s) 265, 615, 835, 897
BmiI GGNNCC 5 cut(s) 266, 267, 496, 898, 990
BmrFI CCNGG 5 cut(s) 405, 839, 901, 1030, 1053
BmsI GCATC 1 cut(s) 319
BmtI GCTAGC 1 cut(s) 575
BpiI GAAGAC 2 cut(s) 77, 375
BpmI CTGGAG 2 cut(s) 339, 579
Bpu10I CCTNAGC 1 cut(s) 807
BpuEI CTTGAG 1 cut(s) 536
Bsa29I ATCGAT 1 cut(s) 312
BsaBI GATNNNNATC 3 cut(s) 198, 426, 493
BsaJI CCNNGG 5 cut(s) 304, 522, 704, 900, 1028
BsaWI WCCGGW 2 cut(s) 18, 617
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bsc4I CCNNNNNNNGG 3 cut(s) 410, 720, 1058
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 3 cut(s) 117, 596, 614
Bse3DI GCAATG 1 cut(s) 1011
Bse8I GATNNNNATC 3 cut(s) 198, 426, 493
BseBI CCWGG 5 cut(s) 405, 839, 901, 1030, 1053
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 5 cut(s) 304, 522, 704, 900, 1028
BseGI GGATG 6 cut(s) 102, 156, 199, 238, 558, 1092
BseJI GATNNNNATC 3 cut(s) 198, 426, 493
BseLI CCNNNNNNNGG 3 cut(s) 410, 720, 1058
BseMI GCAATG 1 cut(s) 1011
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 3 cut(s) 117, 596, 614
BseRI GAGGAG 3 cut(s) 156, 482, 791
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 325
BsgI GTGCAG 1 cut(s) 324
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 5 cut(s) 5, 32, 41, 155, 198
BshVI ATCGAT 1 cut(s) 312
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 49
BsiSI CCGG 3 cut(s) 6, 19, 618
BslFI GGGAC 2 cut(s) 251, 910
BslI CCNNNNNNNGG 3 cut(s) 410, 720, 1058
BsmFI GGGAC 2 cut(s) 251, 910
BsnI GGCC 5 cut(s) 5, 32, 41, 155, 198
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 4 cut(s) 421, 427, 494, 919
Bsp19I CCATGG 2 cut(s) 304, 522
BspACI CCGC 3 cut(s) 33, 581, 744
BspANI GGCC 5 cut(s) 5, 32, 41, 155, 198
BspCNI CTCAG 1 cut(s) 295
BspDI ATCGAT 1 cut(s) 312
BspHI TCATGA 1 cut(s) 1042
BspLI GGNNCC 5 cut(s) 266, 267, 496, 898, 990
BspOI GCTAGC 1 cut(s) 575
BspPI GGATC 5 cut(s) 416, 422, 489, 502, 927
BsrBI CCGCTC 1 cut(s) 581
BsrDI GCAATG 1 cut(s) 1011
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 3 cut(s) 117, 596, 614
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 5 cut(s) 304, 522, 704, 900, 1028
BssMI GATC 4 cut(s) 421, 427, 494, 919
BssT1I CCWWGG 3 cut(s) 304, 522, 704
Bst2UI CCWGG 5 cut(s) 405, 839, 901, 1030, 1053
Bst4CI ACNGT 2 cut(s) 660, 875
Bst6I CTCTTC 1 cut(s) 440
BstC8I GCNNGC 2 cut(s) 474, 573
BstDEI CTNAG 3 cut(s) 227, 282, 807
BstDSI CCRYGG 2 cut(s) 304, 522
BstF5I GGATG 6 cut(s) 102, 156, 199, 238, 558, 1092
BstKTI GATC 4 cut(s) 424, 430, 497, 922
BstMBI GATC 4 cut(s) 421, 427, 494, 919
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 5 cut(s) 38, 152, 338, 581, 590
BstNI CCWGG 5 cut(s) 405, 839, 901, 1030, 1053
BstNSI RCATGY 1 cut(s) 1079
BstSCI CCNGG 5 cut(s) 403, 837, 899, 1028, 1051
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 2 cut(s) 77, 375
BstX2I RGATCY 2 cut(s) 494, 919
BstYI RGATCY 2 cut(s) 494, 919
BstZI CGGCCG 1 cut(s) 30
Bsu15I ATCGAT 1 cut(s) 312
BsuRI GGCC 5 cut(s) 5, 32, 41, 155, 198
BsuTUI ATCGAT 1 cut(s) 312
BtgI CCRYGG 2 cut(s) 304, 522
BtsCI GGATG 6 cut(s) 102, 156, 199, 238, 558, 1092
BtsIMutI CAGTG 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 474, 573
CaiI CAGNNNCTG 1 cut(s) 1058
CciI TCATGA 1 cut(s) 1042
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 4 cut(s) 265, 615, 835, 897
ClaI ATCGAT 1 cut(s) 312
CsiI ACCWGGT 3 cut(s) 403, 837, 1051
Csp6I GTAC 1 cut(s) 556
CspCI CAANNNNNGTGG 2 cut(s) 96, 131
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 3 cut(s) 227, 282, 807
DpnI GATC 4 cut(s) 423, 429, 496, 921
DpnII GATC 4 cut(s) 421, 427, 494, 919
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 4 cut(s) 3, 30, 39, 196
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Ecl136II GAGCTC 1 cut(s) 47
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 3 cut(s) 304, 522, 704
Eco24I GRGCYC 1 cut(s) 49
Eco32I GATATC 1 cut(s) 27
Eco47I GGWCC 4 cut(s) 265, 615, 835, 897
Eco52I CGGCCG 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 47
EcoO109I RGGNCCY 2 cut(s) 265, 897
EcoRI GAATTC 3 cut(s) 621, 857, 905
EcoRII CCWGG 5 cut(s) 403, 837, 899, 1028, 1051
EcoRV GATATC 1 cut(s) 27
EcoT14I CCWWGG 3 cut(s) 304, 522, 704
EcoT38I GRGCYC 1 cut(s) 49
ErhI CCWWGG 3 cut(s) 304, 522, 704
FaqI GGGAC 2 cut(s) 251, 910
FauI CCCGC 1 cut(s) 751
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 3 cut(s) 33, 339, 582
FokI GGATG 6 cut(s) 109, 143, 186, 245, 545, 1099
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 3 cut(s) 33, 339, 582
FspBI CTAG 1 cut(s) 572
GluI GCNGC 3 cut(s) 33, 339, 582
GsuI CTGGAG 2 cut(s) 339, 579
HaeIII GGCC 5 cut(s) 5, 32, 41, 155, 198
HapII CCGG 3 cut(s) 6, 19, 618
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 2 cut(s) 809, 948
HinfI GANTC 4 cut(s) 314, 501, 863, 1033
HpaI GTTAAC 1 cut(s) 16
HpaII CCGG 3 cut(s) 6, 19, 618
HphI GGTGA 1 cut(s) 863
Hpy166II GTNNAC 4 cut(s) 16, 382, 530, 615
Hpy188I TCNGA 1 cut(s) 1120
Hpy188III TCNNGA 9 cut(s) 191, 254, 356, 425, 498, 721, 917, 923, 1043
Hpy8I GTNNAC 4 cut(s) 16, 382, 530, 615
HpyAV CCTTC 3 cut(s) 88, 99, 231
HpyCH4III ACNGT 2 cut(s) 660, 875
HpyCH4V TGCA 5 cut(s) 321, 341, 629, 1003, 1092
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 152, 338, 581, 590
HpyF3I CTNAG 3 cut(s) 227, 282, 807
KflI GGGWCCC 1 cut(s) 265
KspAI GTTAAC 1 cut(s) 16
Kzo9I GATC 4 cut(s) 421, 427, 494, 919
LmnI GCTCC 4 cut(s) 80, 469, 578, 598
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 319
MabI ACCWGGT 3 cut(s) 403, 837, 1051
MaeI CTAG 1 cut(s) 572
MaeIII GTNAC 3 cut(s) 205, 875, 994
MalI GATC 4 cut(s) 423, 429, 496, 921
MbiI CCGCTC 1 cut(s) 581
MboI GATC 4 cut(s) 421, 427, 494, 919
MboII GAAGA 6 cut(s) 34, 69, 77, 380, 457, 989
MflI RGATCY 2 cut(s) 494, 919
MhlI GDGCHC 1 cut(s) 49
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 8 cut(s) 291, 360, 482, 510, 604, 621, 857, 905
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 1 cut(s) 872
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 7 cut(s) 174, 177, 460, 560, 573, 812, 924
Mox20I TGGCCA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 198
MseI TTAA 2 cut(s) 15, 603
MslI CAYNNNNRTG 2 cut(s) 972, 1080
Msp20I TGGCCA 1 cut(s) 198
MspI CCGG 3 cut(s) 6, 19, 618
MspR9I CCNGG 5 cut(s) 405, 839, 901, 1030, 1053
MvaI CCWGG 5 cut(s) 405, 839, 901, 1030, 1053
MwoI GCNNNNNNNGC 5 cut(s) 38, 152, 338, 581, 590
NcoI CCATGG 2 cut(s) 304, 522
NdeII GATC 4 cut(s) 421, 427, 494, 919
NheI GCTAGC 1 cut(s) 571
NlaIV GGNNCC 5 cut(s) 266, 267, 496, 898, 990
NmuCI GTSAC 1 cut(s) 875
NspI RCATGY 1 cut(s) 1079
PagI TCATGA 1 cut(s) 1042
PfeI GAWTC 3 cut(s) 314, 501, 1033
PflMI CCANNNNNTGG 1 cut(s) 1058
PkrI GCNGC 3 cut(s) 34, 340, 583
PleI GAGTC 1 cut(s) 871
PpsI GAGTC 1 cut(s) 871
PpuMI RGGWCCY 2 cut(s) 265, 897
Psp124BI GAGCTC 1 cut(s) 49
Psp5II RGGWCCY 2 cut(s) 265, 897
Psp6I CCWGG 5 cut(s) 403, 837, 899, 1028, 1051
PspGI CCWGG 5 cut(s) 403, 837, 899, 1028, 1051
PspN4I GGNNCC 5 cut(s) 266, 267, 496, 898, 990
PspPI GGNCC 4 cut(s) 265, 615, 835, 897
PspPPI RGGWCCY 2 cut(s) 265, 897
PstNI CAGNNNCTG 1 cut(s) 1058
PsuI RGATCY 2 cut(s) 494, 919
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
RseI CAYNNNNRTG 2 cut(s) 972, 1080
SacI GAGCTC 1 cut(s) 49
SaqAI TTAA 2 cut(s) 15, 603
SatI GCNGC 3 cut(s) 33, 339, 582
Sau3AI GATC 4 cut(s) 421, 427, 494, 919
Sau96I GGNCC 4 cut(s) 265, 615, 835, 897
SchI GAGTC 1 cut(s) 872
ScrFI CCNGG 5 cut(s) 405, 839, 901, 1030, 1053
SduI GDGCHC 1 cut(s) 49
SexAI ACCWGGT 3 cut(s) 403, 837, 1051
SfaNI GCATC 1 cut(s) 319
SfiI GGCCNNNNNGGCC 1 cut(s) 38
SinI GGWCC 4 cut(s) 265, 615, 835, 897
SmiMI CAYNNNNRTG 2 cut(s) 972, 1080
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 8 cut(s) 291, 360, 482, 510, 604, 621, 857, 905
SsiI CCGC 3 cut(s) 33, 581, 744
SspI AATATT 1 cut(s) 886
SspMI CTAG 1 cut(s) 572
SstI GAGCTC 1 cut(s) 49
StyD4I CCNGG 5 cut(s) 403, 837, 899, 1028, 1051
StyI CCWWGG 3 cut(s) 304, 522, 704
TaaI ACNGT 2 cut(s) 660, 875
TaqI TCGA 2 cut(s) 312, 861
TasI AATT 8 cut(s) 291, 360, 482, 510, 604, 621, 857, 905
TatI WGTACW 1 cut(s) 555
TauI GCSGC 2 cut(s) 35, 584
TfiI GAWTC 3 cut(s) 314, 501, 1033
Tru1I TTAA 2 cut(s) 15, 603
Tru9I TTAA 2 cut(s) 15, 603
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 1 cut(s) 875
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 875
TspDTI ATGAA 5 cut(s) 495, 896, 947, 960, 990
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 117
Van91I CCANNNNNTGG 1 cut(s) 1058
VpaK11BI GGWCC 4 cut(s) 265, 615, 835, 897
XapI RAATTY 3 cut(s) 621, 857, 905
XceI RCATGY 1 cut(s) 1079
XmiI GTMKAC 1 cut(s) 381
XspI CTAG 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.