Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000873

Physical Location & Seq

Genomic Coordinates Reverse (-)

16827442 .. 16828041

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0100900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAAGCGGAGCAGGTGGACTCCCACTATAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGATAATGTTGCCAATTCATCTGCACATGCTTCTGCTTCTTCTGCTGGTGTGATGATTGCTGTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

199

Amino Acids

21.84

Weight (kDa)

9.2

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	5.2e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74300 AT1G74300 AT2G36290 AT2G36290
fragaria_vesca	FvH4_6g18490 FvH4_6g18490 FvH4_6g18490 FvH4_7g05600 FvH4_7g05600
malus_domestica	MD07G1064200.v1.1 MD07G1064400.v1.1 MD07G1064600.v1.1 MD07G1065000.v1.1 MD07G1065100.v1.1 MD07G1065200.v1.1 MD07G1065300.v1.1 MD12G1024000.v1.1 MD14G1021400.v1.1
prunus_persica	Prupe.2G079000_v2.0.a1 Prupe.2G079000_v2.0.a1 Prupe.2G079000_v2.0.a1 Prupe.7G112400_v2.0.a1
pyrus_communis	pycom07g04990 pycom12g02260 pycom14g02080
rosa_chinensis	RchiOBHm_Chr1g0332431 RchiOBHm_Chr1g0332511 RchiOBHm_Chr1g0332561 RchiOBHm_Chr3g0473031
rosa_laevigata	RLG00000024036 RLG00000029596 RLG00000029656 RLG00000029665 RLG00000029670
rosa_multiflora	Rmu_sc0002307.1_g000026 Rmu_sc0006336.1_g000009 Rmu_sc0007458.1_g000015 Rmu_ssc0000161.1_g000006
rosa_roxburghii	Rroxscaffold_4G00318150 Rroxscaffold_4G00318180 Rroxscaffold_6G00408360
rosa_rugosa	Rorug01G0100700 Rorug01G0100800 Rorug01G0100900 Rorug01G0101600 Rorug01G0101600 Rorug03G0130800
rosa_samantha	Rh1AG124900 Rh1AG126000 Rh1AG126200 Rh1BG095300 Rh1CG119000 Rh1CG119900 Rh1CG120100 Rh1DG129800 Rh1DG130300 Rh1DG130400 Rh3AG182600 Rh3BG208900 Rh3CG206000 Rh3DG206000
rosa_wichuraiana	Rw0G002590 Rw1G010150 Rw1G010180 Rw1G010700 Rw3G016050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	78
Acc36I	ACCTGC	2 cut(s)	78, 160
AccIII	TCCGGA	1 cut(s)	588
AciI	CCGC	3 cut(s)	82, 516, 595
AclWI	GGATC	2 cut(s)	188, 430
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	220, 443
AleI	CACNNNNGTG	1 cut(s)	525
AluBI	AGCT	4 cut(s)	130, 193, 550, 575
AluI	AGCT	4 cut(s)	130, 193, 550, 575
Alw21I	GWGCWC	1 cut(s)	552
AlwI	GGATC	2 cut(s)	188, 430
Ama87I	CYCGRG	1 cut(s)	255
Aor13HI	TCCGGA	1 cut(s)	588
ApeKI	GCWGC	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	335, 482
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	2 cut(s)	256, 552
BbsI	GAAGAC	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	3 cut(s)	26, 394, 500
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BfmI	CTRYAG	2 cut(s)	102, 162
BfuAI	ACCTGC	2 cut(s)	78, 160
BisI	GCNGC	2 cut(s)	51, 595
BlpI	GCTNAGC	1 cut(s)	551
BlsI	GCNGC	2 cut(s)	52, 596
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	3 cut(s)	6, 155, 593
BmrFI	CCNGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	551
BpuEI	CTTGAG	2 cut(s)	107, 566
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	588
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse8I	GATNNNNATC	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	588
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 292
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	565
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	552
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	54, 589
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	3 cut(s)	256, 300, 552
Bsp13I	TCCGGA	1 cut(s)	588
Bsp143I	GATC	5 cut(s)	106, 180, 210, 308, 422
Bsp1720I	GCTNAGC	1 cut(s)	551
BspACI	CCGC	3 cut(s)	82, 516, 595
BspCNI	CTCAG	1 cut(s)	564
BspEI	TCCGGA	1 cut(s)	588
BspLI	GGNNCC	3 cut(s)	6, 155, 593
BspMI	ACCTGC	2 cut(s)	78, 160
BspPI	GGATC	2 cut(s)	188, 430
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	5 cut(s)	106, 180, 210, 308, 422
Bst4CI	ACNGT	1 cut(s)	524
BstDEI	CTNAG	1 cut(s)	551
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	5 cut(s)	109, 183, 213, 311, 425
BstMBI	GATC	5 cut(s)	106, 180, 210, 308, 422
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 368, 561
BstNSI	RCATGY	2 cut(s)	73, 356
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	500
BstX2I	RGATCY	2 cut(s)	180, 422
BstYI	RGATCY	2 cut(s)	180, 422
BtsCI	GGATG	2 cut(s)	37, 292
BveI	ACCTGC	2 cut(s)	78, 160
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	8 cut(s)	70, 293, 301, 353, 433, 463, 467, 490
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	551
DpnI	GATC	5 cut(s)	108, 182, 212, 310, 424
DpnII	GATC	5 cut(s)	106, 180, 210, 308, 422
Ecl136II	GAGCTC	1 cut(s)	550
Eco24I	GRGCYC	2 cut(s)	256, 552
Eco47I	GGWCC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	550
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	550
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	468
EcoT38I	GRGCYC	2 cut(s)	256, 552
FaeI	CATG	8 cut(s)	73, 296, 304, 356, 436, 466, 470, 493
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	8 cut(s)	69, 292, 300, 352, 432, 462, 466, 489
Fnu4HI	GCNGC	2 cut(s)	51, 595
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	2 cut(s)	256, 552
Fsp4HI	GCNGC	2 cut(s)	51, 595
GluI	GCNGC	2 cut(s)	51, 595
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	2 cut(s)	54, 589
Hin1II	CATG	8 cut(s)	73, 296, 304, 356, 436, 466, 470, 493
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	2 cut(s)	94, 117
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	2 cut(s)	54, 589
HphI	GGTGA	2 cut(s)	335, 482
Hpy166II	GTNNAC	4 cut(s)	93, 244, 279, 391
Hpy188I	TCNGA	3 cut(s)	111, 286, 505
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 589
Hpy8I	GTNNAC	4 cut(s)	93, 244, 279, 391
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	304, 350, 466
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 368, 561
HpyF3I	CTNAG	1 cut(s)	551
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	8 cut(s)	73, 296, 304, 356, 436, 466, 470, 493
Kpn2I	TCCGGA	1 cut(s)	588
KspAI	GTTAAC	1 cut(s)	391
Kzo9I	GATC	5 cut(s)	106, 180, 210, 308, 422
LmnI	GCTCC	3 cut(s)	84, 127, 591
LpnPI	CCDG	9 cut(s)	29, 67, 73, 155, 203, 297, 357, 561, 574
Lsp1109I	GCAGC	1 cut(s)	62
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	5 cut(s)	108, 182, 212, 310, 424
MboI	GATC	5 cut(s)	106, 180, 210, 308, 422
MboII	GAAGA	4 cut(s)	280, 283, 357, 505
MflI	RGATCY	2 cut(s)	180, 422
MhlI	GDGCHC	3 cut(s)	256, 300, 552
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	8 cut(s)	22, 29, 131, 171, 462, 466, 503, 559
Mph1103I	ATGCAT	1 cut(s)	468
MroI	TCCGGA	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	2 cut(s)	193, 597
MspI	CCGG	2 cut(s)	54, 589
MspR9I	CCNGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	3 cut(s)	79, 368, 561
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	5 cut(s)	106, 180, 210, 308, 422
NlaIII	CATG	8 cut(s)	73, 296, 304, 356, 436, 466, 470, 493
NlaIV	GGNNCC	3 cut(s)	6, 155, 593
NmuCI	GTSAC	1 cut(s)	518
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	2 cut(s)	73, 356
OliI	CACNNNNGTG	1 cut(s)	525
PaqCI	CACCTGC	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	52, 596
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	6, 155, 593
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	180, 422
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	2 cut(s)	51, 595
Sau3AI	GATC	5 cut(s)	106, 180, 210, 308, 422
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	3 cut(s)	256, 300, 552
SetI	ASST	9 cut(s)	92, 132, 155, 174, 195, 228, 514, 552, 577
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	2 cut(s)	122, 545
SmoI	CTYRAG	2 cut(s)	122, 545
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	3 cut(s)	82, 516, 595
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	597
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	4 cut(s)	281, 333, 443, 506
VpaK11BI	GGWCC	1 cut(s)	153
XceI	RCATGY	2 cut(s)	73, 356
XmnI	GAANNNNTTC	1 cut(s)	447
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.