Rh1AG126000

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000873
Physical Location & Seq
Reverse (-)
23442893 .. 23445349
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG126000.1

Sequence Viewer

Length: 1041 bp
ATGTTTAGGAGAGTCGCATTTTTGTTGTTGGTTGGATTGCTGGCATGGGCTTATCAGGCCACCCAACCACCCCCTCCGAAGATTTGCGGTTCCCCCGGCGGCCCACCCGTCACAGCTCCTAGAATAAAGCTTAGAGATGGAAGATATTTGGCCTACAAGGAGCATGGTGTGTCAAAACAAGTGGCCAGATATAAGATTATCTTTGTTCATGGCTTTGGTTCTTCCAGACATGATGCAGTGATTGCAACCAAAACCTCACCAGAAGTTATCGAAGAGTTAGGGGTACACATTGTGTCTTTTGACAGACCAGGCTATGGTGAAAGTGATCCAGATCCTAAGCGAACAGTGAAGAGTTTGGCTTTAGATATAGAAGAGCTTGCTGACCAGCTCAGATTCGGATCCAAATTTTATGTAGTTGGAAATTCTATGGGTGGACAGGTTATCTGGAGCTGTCTTCAGTACATCCCTCATAGGCTAGCTGGAGCTACACTGTATGCTCCTGTTGTCAACTACTGGTGGCCAGGCTTTCCTGCCAACTTGTCGACAGATGCCTACTATAAACAACCCCCCGGGGATCAATGGGCACTTCGAGTTGCTCACCATATACCATGGCTAACATACTGGTGGAACACTCAGAAATTATTTCCTTCATCAAGCGCTATAGTTCATAGACCAGAGATTTTCTCCAGTCAGGACTTGGAAATACTTAGGAAGATGCAGGCTTCTGGCATACAAACTAACAGGGCACACGGAAAGCAGCAAGGGGTATACGAGTCGATCCATCGTGACATGATGATTGGATTTGGGAGTTGGGAGTTTGACCCTATGGAAATCGAGAACCCATTTCCCAACAATGAAGGGTCCGTCCATCTGTGGCATGGTGATGACGATAGGCTTGTTCCAGTTGAACTTCAACGCTTTATTGTGGGAAAGCTTCCATGGATTGACTACCATGAGTTACCAGGTGCTGGGCACTTCTTTGCATATGATGATGGTATAAATGAAGCTATGTTAAAGGCAATGCTGACTGGGGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

346

Amino Acids

39.13

Weight (kDa)

6.7

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 63 - 325 2.5e-10 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 66 - 330 7.7e-17 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 66 - 330 3.5e-16 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 314, 968
AccI GTMKAC 2 cut(s) 542, 768
AciI CCGC 2 cut(s) 87, 99
AclWI GGATC 6 cut(s) 320, 326, 393, 406, 582, 772
AcoI YGGCCR 2 cut(s) 183, 518
AcsI RAATTY 2 cut(s) 404, 421
AcuI CTGAAG 1 cut(s) 440
AdeI CACNNNGTG 1 cut(s) 292
AfaI GTAC 2 cut(s) 285, 461
AfeI AGCGCT 1 cut(s) 658
AfiI CCNNNNNNNGG 2 cut(s) 314, 968
AgsI TTSAA 2 cut(s) 908, 914
AjnI CCWGG 3 cut(s) 307, 520, 961
AluBI AGCT 9 cut(s) 116, 130, 376, 388, 450, 479, 485, 934, 1007
AluI AGCT 9 cut(s) 116, 130, 376, 388, 450, 479, 485, 934, 1007
AlwI GGATC 6 cut(s) 320, 326, 393, 406, 582, 772
AlwNI CAGNNNCTG 1 cut(s) 968
Ama87I CYCGRG 1 cut(s) 569
Aor51HI AGCGCT 1 cut(s) 658
AoxI GGCC 5 cut(s) 57, 100, 150, 183, 518
ApeKI GCWGC 1 cut(s) 757
ApoI RAATTY 2 cut(s) 404, 421
AspLEI GCGC 1 cut(s) 659
AspS9I GGNCC 2 cut(s) 101, 861
AsuC2I CCSGG 3 cut(s) 96, 570, 571
AsuHPI GGTGA 4 cut(s) 249, 329, 590, 893
AsuNHI GCTAGC 1 cut(s) 475
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 1 cut(s) 861
BaeGI GKGCMC 3 cut(s) 586, 748, 975
BalI TGGCCA 2 cut(s) 185, 520
BamHI GGATCC 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 769
BccI CCATC 4 cut(s) 131, 789, 876, 986
BciT130I CCWGG 3 cut(s) 309, 522, 963
BcnI CCSGG 3 cut(s) 96, 570, 571
BfaI CTAG 2 cut(s) 120, 476
BfmI CTRYAG 1 cut(s) 660
BfoI RGCGCY 1 cut(s) 660
BisI GCNGC 2 cut(s) 100, 758
BlsI GCNGC 2 cut(s) 101, 759
Bme1390I CCNGG 6 cut(s) 96, 309, 522, 570, 571, 963
Bme18I GGWCC 1 cut(s) 861
BmeT110I CYCGRG 1 cut(s) 569
BmgT120I GGNCC 2 cut(s) 101, 861
BmiI GGNNCC 3 cut(s) 91, 400, 862
BmrFI CCNGG 6 cut(s) 96, 309, 522, 570, 571, 963
BmrI ACTGGG 1 cut(s) 1038
BmsI GCATC 3 cut(s) 223, 538, 705
BmtI GCTAGC 1 cut(s) 479
BmuI ACTGGG 1 cut(s) 1038
BpiI GAAGAC 1 cut(s) 446
BplI GAGNNNNNCTC 2 cut(s) 668, 700
BpmI CTGGAG 3 cut(s) 466, 501, 670
Bpu10I CCTNAGC 1 cut(s) 336
BpuMI CCSGG 3 cut(s) 96, 570, 571
BsaBI GATNNNNATC 2 cut(s) 330, 397
BsaJI CCNNGG 6 cut(s) 94, 568, 569, 570, 608, 938
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 968
Bse1I ACTGG 5 cut(s) 518, 626, 687, 902, 1033
Bse3DI GCAATG 1 cut(s) 1026
Bse8I GATNNNNATC 2 cut(s) 330, 397
BseBI CCWGG 3 cut(s) 309, 522, 963
BseDI CCNNGG 6 cut(s) 94, 568, 569, 570, 608, 938
BseGI GGATG 1 cut(s) 462
BseJI GATNNNNATC 2 cut(s) 330, 397
BseLI CCNNNNNNNGG 2 cut(s) 314, 968
BseMI GCAATG 1 cut(s) 1026
BseMII CTCAG 2 cut(s) 403, 647
BseNI ACTGG 5 cut(s) 518, 626, 687, 902, 1033
BseSI GKGCMC 3 cut(s) 586, 748, 975
BseXI GCAGC 1 cut(s) 769
BseYI CCCAGC 1 cut(s) 968
BshFI GGCC 5 cut(s) 59, 102, 152, 185, 520
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 2 cut(s) 96, 570
BslI CCNNNNNNNGG 2 cut(s) 314, 968
BsnI GGCC 5 cut(s) 59, 102, 152, 185, 520
BsoBI CYCGRG 1 cut(s) 569
Bsp1286I GDGCHC 3 cut(s) 586, 748, 975
Bsp143I GATC 5 cut(s) 325, 331, 398, 574, 777
Bsp19I CCATGG 2 cut(s) 608, 938
BspACI CCGC 2 cut(s) 87, 99
BspANI GGCC 5 cut(s) 59, 102, 152, 185, 520
BspCNI CTCAG 2 cut(s) 402, 646
BspLI GGNNCC 3 cut(s) 91, 400, 862
BspOI GCTAGC 1 cut(s) 479
BspPI GGATC 6 cut(s) 320, 326, 393, 406, 582, 772
BspQI GCTCTTC 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 1026
BsrI ACTGG 5 cut(s) 518, 626, 687, 902, 1033
BssECI CCNNGG 6 cut(s) 94, 568, 569, 570, 608, 938
BssMI GATC 5 cut(s) 325, 331, 398, 574, 777
BssNAI GTATAC 1 cut(s) 769
BssT1I CCWWGG 2 cut(s) 608, 938
Bst1107I GTATAC 1 cut(s) 769
Bst2UI CCWGG 3 cut(s) 309, 522, 963
Bst4CI ACNGT 2 cut(s) 346, 492
Bst6I CTCTTC 3 cut(s) 267, 344, 366
BstAPI GCANNNNNTGC 1 cut(s) 242
BstC8I GCNNGC 4 cut(s) 42, 378, 477, 720
BstDEI CTNAG 5 cut(s) 131, 336, 389, 633, 707
BstDSI CCRYGG 2 cut(s) 608, 938
BstF5I GGATG 1 cut(s) 462
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 1 cut(s) 659
BstKTI GATC 5 cut(s) 328, 334, 401, 577, 780
BstMBI GATC 5 cut(s) 325, 331, 398, 574, 777
BstMWI GCNNNNNNNGC 2 cut(s) 56, 242
BstNI CCWGG 3 cut(s) 309, 522, 963
BstSCI CCNGG 6 cut(s) 94, 307, 520, 568, 569, 961
BstSFI CTRYAG 1 cut(s) 660
BstSLI GKGCMC 3 cut(s) 586, 748, 975
BstV1I GCAGC 1 cut(s) 769
BstV2I GAAGAC 1 cut(s) 446
BstX2I RGATCY 2 cut(s) 331, 398
BstYI RGATCY 2 cut(s) 331, 398
BstZ17I GTATAC 1 cut(s) 769
BsuRI GGCC 5 cut(s) 59, 102, 152, 185, 520
BtgI CCRYGG 2 cut(s) 608, 938
BtsCI GGATG 1 cut(s) 462
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 3 cut(s) 243, 351, 488
Cac8I GCNNGC 4 cut(s) 42, 378, 477, 720
CaiI CAGNNNCTG 1 cut(s) 968
CfoI GCGC 1 cut(s) 659
Cfr13I GGNCC 2 cut(s) 101, 861
Cfr9I CCCGGG 1 cut(s) 569
CsiI ACCWGGT 1 cut(s) 961
Csp6I GTAC 2 cut(s) 284, 460
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 9 cut(s) 45, 164, 209, 230, 609, 790, 878, 939, 953
CviQI GTAC 2 cut(s) 284, 460
DdeI CTNAG 5 cut(s) 131, 336, 389, 633, 707
DpnI GATC 5 cut(s) 327, 333, 400, 576, 779
DpnII GATC 5 cut(s) 325, 331, 398, 574, 777
DraIII CACNNNGTG 1 cut(s) 292
EaeI YGGCCR 2 cut(s) 183, 518
Eam1104I CTCTTC 3 cut(s) 267, 344, 366
EarI CTCTTC 3 cut(s) 267, 344, 366
Eco130I CCWWGG 2 cut(s) 608, 938
Eco47I GGWCC 1 cut(s) 861
Eco47III AGCGCT 1 cut(s) 658
Eco57I CTGAAG 1 cut(s) 440
Eco88I CYCGRG 1 cut(s) 569
EcoRII CCWGG 3 cut(s) 307, 520, 961
EcoT14I CCWWGG 2 cut(s) 608, 938
ErhI CCWWGG 2 cut(s) 608, 938
FaeI CATG 9 cut(s) 48, 167, 212, 233, 612, 793, 881, 942, 956
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 9 cut(s) 44, 163, 208, 229, 608, 789, 877, 938, 952
FauNDI CATATG 1 cut(s) 985
FblI GTMKAC 2 cut(s) 542, 768
Fnu4HI GCNGC 2 cut(s) 100, 758
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 2 cut(s) 100, 758
FspBI CTAG 2 cut(s) 120, 476
GlaI GCGC 1 cut(s) 658
GluI GCNGC 2 cut(s) 100, 758
GsaI CCCAGC 1 cut(s) 972
GsuI CTGGAG 3 cut(s) 466, 501, 670
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 5 cut(s) 59, 102, 152, 185, 520
HapII CCGG 2 cut(s) 96, 570
HhaI GCGC 1 cut(s) 659
Hin1II CATG 9 cut(s) 48, 167, 212, 233, 612, 793, 881, 942, 956
Hin6I GCGC 1 cut(s) 657
HinP1I GCGC 1 cut(s) 657
HincII GTYRAC 2 cut(s) 508, 543
HindII GTYRAC 2 cut(s) 508, 543
HindIII AAGCTT 2 cut(s) 128, 932
HinfI GANTC 3 cut(s) 12, 393, 773
HpaII CCGG 2 cut(s) 96, 570
HphI GGTGA 4 cut(s) 249, 329, 590, 893
Hpy166II GTNNAC 5 cut(s) 286, 434, 508, 543, 769
Hpy188I TCNGA 4 cut(s) 78, 392, 398, 636
Hpy188III TCNNGA 6 cut(s) 225, 329, 445, 692, 785, 835
Hpy8I GTNNAC 5 cut(s) 286, 434, 508, 543, 769
HpyAV CCTTC 2 cut(s) 657, 851
HpyCH4III ACNGT 2 cut(s) 346, 492
HpyCH4V TGCA 4 cut(s) 236, 245, 718, 983
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 242
HpyF3I CTNAG 5 cut(s) 131, 336, 389, 633, 707
Hsp92II CATG 9 cut(s) 48, 167, 212, 233, 612, 793, 881, 942, 956
HspAI GCGC 1 cut(s) 657
Kzo9I GATC 5 cut(s) 325, 331, 398, 574, 777
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 5 cut(s) 121, 160, 447, 482, 502
Lsp1109I GCAGC 1 cut(s) 769
LweI GCATC 3 cut(s) 223, 538, 705
MabI ACCWGGT 1 cut(s) 961
MaeI CTAG 2 cut(s) 120, 476
MaeIII GTNAC 3 cut(s) 109, 785, 957
MalI GATC 5 cut(s) 327, 333, 400, 576, 779
MboI GATC 5 cut(s) 325, 331, 398, 574, 777
MboII GAAGA 8 cut(s) 91, 153, 213, 284, 361, 383, 446, 724
MflI RGATCY 2 cut(s) 331, 398
MhlI GDGCHC 3 cut(s) 586, 748, 975
MlsI TGGCCA 2 cut(s) 185, 520
MluCI AATT 3 cut(s) 404, 421, 638
MluNI TGGCCA 2 cut(s) 185, 520
MlyI GAGTC 2 cut(s) 21, 782
MmeI TCCRAC 2 cut(s) 13, 397
MnlI CCTC 3 cut(s) 84, 265, 477
Mox20I TGGCCA 2 cut(s) 185, 520
MscI TGGCCA 2 cut(s) 185, 520
MseI TTAA 1 cut(s) 1013
MslI CAYNNNNRTG 2 cut(s) 622, 882
Msp20I TGGCCA 2 cut(s) 185, 520
MspI CCGG 2 cut(s) 96, 570
MspR9I CCNGG 6 cut(s) 96, 309, 522, 570, 571, 963
MvaI CCWGG 3 cut(s) 309, 522, 963
MwoI GCNNNNNNNGC 2 cut(s) 56, 242
NciI CCSGG 3 cut(s) 96, 570, 571
NcoI CCATGG 2 cut(s) 608, 938
NdeI CATATG 1 cut(s) 985
NdeII GATC 5 cut(s) 325, 331, 398, 574, 777
NheI GCTAGC 1 cut(s) 475
NlaIII CATG 9 cut(s) 48, 167, 212, 233, 612, 793, 881, 942, 956
NlaIV GGNNCC 3 cut(s) 91, 400, 862
NmuCI GTSAC 2 cut(s) 109, 785
PciSI GCTCTTC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 393
PflMI CCANNNNNTGG 2 cut(s) 314, 968
PkrI GCNGC 2 cut(s) 101, 759
PleI GAGTC 2 cut(s) 20, 781
PpsI GAGTC 2 cut(s) 20, 781
Psp6I CCWGG 3 cut(s) 307, 520, 961
PspFI CCCAGC 1 cut(s) 968
PspGI CCWGG 3 cut(s) 307, 520, 961
PspN4I GGNNCC 3 cut(s) 91, 400, 862
PspPI GGNCC 2 cut(s) 101, 861
PstNI CAGNNNCTG 1 cut(s) 968
PsuI RGATCY 2 cut(s) 331, 398
RsaI GTAC 2 cut(s) 285, 461
RsaNI GTAC 2 cut(s) 284, 460
RseI CAYNNNNRTG 2 cut(s) 622, 882
SalI GTCGAC 1 cut(s) 541
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 1013
SatI GCNGC 2 cut(s) 100, 758
Sau3AI GATC 5 cut(s) 325, 331, 398, 574, 777
Sau96I GGNCC 2 cut(s) 101, 861
SchI GAGTC 2 cut(s) 21, 782
ScrFI CCNGG 6 cut(s) 96, 309, 522, 570, 571, 963
SduI GDGCHC 3 cut(s) 586, 748, 975
SexAI ACCWGGT 1 cut(s) 961
SfaNI GCATC 3 cut(s) 223, 538, 705
SfcI CTRYAG 1 cut(s) 660
SinI GGWCC 1 cut(s) 861
SmaI CCCGGG 1 cut(s) 571
SmiMI CAYNNNNRTG 2 cut(s) 622, 882
Sse9I AATT 3 cut(s) 404, 421, 638
SsiI CCGC 2 cut(s) 87, 99
SspMI CTAG 2 cut(s) 120, 476
StyD4I CCNGG 6 cut(s) 94, 307, 520, 568, 569, 961
StyI CCWWGG 2 cut(s) 608, 938
TaaI ACNGT 2 cut(s) 346, 492
TaqI TCGA 5 cut(s) 270, 542, 589, 776, 834
TasI AATT 3 cut(s) 404, 421, 638
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 1 cut(s) 393
Tru1I TTAA 1 cut(s) 1013
Tru9I TTAA 1 cut(s) 1013
TscAI CASTG 3 cut(s) 243, 351, 495
TseFI GTSAC 2 cut(s) 109, 785
TseI GCWGC 1 cut(s) 757
Tsp45I GTSAC 2 cut(s) 109, 785
TspDTI ATGAA 5 cut(s) 197, 639, 656, 870, 1017
TspGWI ACGGA 2 cut(s) 765, 853
TspMI CCCGGG 1 cut(s) 569
TspRI CASTG 3 cut(s) 243, 351, 495
Van91I CCANNNNNTGG 2 cut(s) 314, 968
VpaK11BI GGWCC 1 cut(s) 861
XapI RAATTY 2 cut(s) 404, 421
XcmI CCANNNNNNNNNTGG 2 cut(s) 694, 875
XmaI CCCGGG 1 cut(s) 569
XmiI GTMKAC 2 cut(s) 542, 768
XspI CTAG 2 cut(s) 120, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.