Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000873

Physical Location & Seq

Genomic Coordinates Reverse (-)

6162687 .. 6165911

Gene Structure 3225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1065100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTTTAAGAGGATCACATTCATCTTGTTGGTTGGATTGCTGGCGTGGGCATATCAGGCCGCCCGACCCCCACCTCCGACCATCTGTGGTTCGCCTGGCGGTCCACCCATAACAGCGCCTAGAATAAGGCTAAGGGATGGAAGATTTTTGGCCTACAAGGAACATGGTGTTCCAAAACCAATCGCAAAGTACAAGATTATCTTTGTTCATCCCTTCAGTAGTTCCCGACACGATCTAATCATTACAATATCCGTCTCTCCGGAAGTCATTGAAGATTTAGGTGTGTACATTGTGTCATTCGACAGACCAGGGTACGGGGAAAGTGATCCGGATCTTAAGAGAACAGCAAAGAGCTTGGCGTTAGATATAGAGGAGCTTGGTGATCAGCTGGAACTCGGATCCAATTTTTATGTAATTGGATACTCAATGGGAGGACAGTGCATCTGGAAGTGTCTTCAGTACATCCCTCATAGGCTAGCAGGAGCAGCACTGATCGCTCCGGTGATCAACTACTGGTGGCCAGGACTTCCTGCCAACTTGTCATCTTATGCCTATAAGAAGCAACCTCCGCAGGATCAATGGGCGCTTCGAGCTGCTCACTATATACCTTGGTTAACCTACTGGTGGAACACTCAGAAATTCTTTCCTAAATCCAGCGTTGTATCCGGGAAACCAGAGAATATGTTTTCCCGCCAAGATTGGGAAATCATTAGGAATGCAAAGGTTTCTGGAAGAGAAAAGCACAAGGCACATGTCACGCAGCAAGGAGAAGCTGAGTCCATCTTTCGCGACATGGTAGTTGGATTTGGGAGCTGGGAATTTGATCTAATGGATCTGCAGAACCCCTTTGCCAGCAACGAAGGCTCGGTCCATCTATGGCAGGGTGACGAAGATAAGCTTGTGCCAGTTGAGCTGCAACGCTATATTGCCGAAAAGCTTCCATGGATTCACTACCATGAGGTACCAGGTGGTGGACATTTGTTTCCAGCTGCAGATGGTATGAGCGAAGTCATCTTAAATGCACTTCTAATTAGAGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

348

Amino Acids

39.31

Weight (kDa)

7.18

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	66 - 330	1.9e-13	Alpha/beta hydrolase family
Hydrolase_4	PF12146	93 - 326	1.2e-07	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	94 - 327	2e-12	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74300 AT1G74300 AT2G36290 AT2G36290
fragaria_vesca	FvH4_6g18490 FvH4_6g18490 FvH4_6g18490 FvH4_7g05600 FvH4_7g05600
malus_domestica	MD07G1064200.v1.1 MD07G1064400.v1.1 MD07G1064600.v1.1 MD07G1065000.v1.1 MD07G1065100.v1.1 MD07G1065200.v1.1 MD07G1065300.v1.1 MD12G1024000.v1.1 MD14G1021400.v1.1
prunus_persica	Prupe.2G079000_v2.0.a1 Prupe.2G079000_v2.0.a1 Prupe.2G079000_v2.0.a1 Prupe.7G112400_v2.0.a1
pyrus_communis	pycom07g04990 pycom12g02260 pycom14g02080
rosa_chinensis	RchiOBHm_Chr1g0332431 RchiOBHm_Chr1g0332511 RchiOBHm_Chr1g0332561 RchiOBHm_Chr3g0473031
rosa_laevigata	RLG00000024036 RLG00000029596 RLG00000029656 RLG00000029665 RLG00000029670
rosa_multiflora	Rmu_sc0002307.1_g000026 Rmu_sc0006336.1_g000009 Rmu_sc0007458.1_g000015 Rmu_ssc0000161.1_g000006
rosa_roxburghii	Rroxscaffold_4G00318150 Rroxscaffold_4G00318180 Rroxscaffold_6G00408360
rosa_rugosa	Rorug01G0100700 Rorug01G0100800 Rorug01G0100900 Rorug01G0101600 Rorug01G0101600 Rorug03G0130800
rosa_samantha	Rh1AG124900 Rh1AG126000 Rh1AG126200 Rh1BG095300 Rh1CG119000 Rh1CG119900 Rh1CG120100 Rh1DG129800 Rh1DG130300 Rh1DG130400 Rh3AG182600 Rh3BG208900 Rh3CG206000 Rh3DG206000
rosa_wichuraiana	Rw0G002590 Rw1G010150 Rw1G010180 Rw1G010700 Rw3G016050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	961
AccB1I	GGYRCC	1 cut(s)	961
AccB7I	CCANNNNNTGG	1 cut(s)	971
AccII	CGCG	1 cut(s)	789
AccIII	TCCGGA	2 cut(s)	259, 328
AciI	CCGC	4 cut(s)	60, 99, 569, 691
AclWI	GGATC	7 cut(s)	20, 320, 339, 393, 406, 582, 840
AcoI	YGGCCR	1 cut(s)	518
AcsI	RAATTY	2 cut(s)	638, 818
AcuI	CTGAAG	2 cut(s)	199, 440
AfaI	GTAC	5 cut(s)	191, 287, 314, 461, 963
AfiI	CCNNNNNNNGG	4 cut(s)	314, 624, 700, 971
AflII	CTTAAG	1 cut(s)	335
AflIII	ACRYGT	1 cut(s)	751
AgsI	TTSAA	1 cut(s)	272
AjnI	CCWGG	4 cut(s)	94, 307, 520, 964
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	7 cut(s)	20, 320, 339, 393, 406, 582, 840
Aor13HI	TCCGGA	2 cut(s)	259, 328
AoxI	GGCC	3 cut(s)	57, 150, 518
ApeKI	GCWGC	5 cut(s)	485, 593, 760, 913, 989
ApoI	RAATTY	2 cut(s)	638, 818
ArsI	GACNNNNNNTTYG	2 cut(s)	852, 884
Asp700I	GAANNNNTTC	1 cut(s)	936
Asp718I	GGTACC	1 cut(s)	961
AspLEI	GCGC	2 cut(s)	118, 586
AspS9I	GGNCC	2 cut(s)	101, 868
AsuC2I	CCSGG	1 cut(s)	667
AsuHPI	GGTGA	3 cut(s)	392, 514, 896
AsuNHI	GCTAGC	1 cut(s)	475
AvaII	GGWCC	2 cut(s)	101, 868
BalI	TGGCCA	1 cut(s)	520
BamHI	GGATCC	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	961
BbsI	GAAGAC	1 cut(s)	446
BbvI	GCAGC	5 cut(s)	497, 580, 772, 900, 976
BccI	CCATC	5 cut(s)	89, 131, 788, 879, 989
BciT130I	CCWGG	4 cut(s)	96, 309, 522, 966
BciVI	GTATCC	2 cut(s)	413, 673
BclI	TGATCA	2 cut(s)	382, 504
BcnI	CCSGG	1 cut(s)	667
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	2 cut(s)	120, 476
BfmI	CTRYAG	2 cut(s)	836, 990
BfoI	RGCGCY	2 cut(s)	119, 587
BfrI	CTTAAG	1 cut(s)	335
BfuI	GTATCC	2 cut(s)	413, 673
BisI	GCNGC	6 cut(s)	60, 486, 594, 761, 914, 990
BlsI	GCNGC	6 cut(s)	61, 487, 595, 762, 915, 991
Bme1390I	CCNGG	5 cut(s)	96, 309, 522, 667, 966
Bme18I	GGWCC	2 cut(s)	101, 868
BmgT120I	GGNCC	2 cut(s)	101, 868
BmiI	GGNNCC	2 cut(s)	400, 963
BmrFI	CCNGG	5 cut(s)	96, 309, 522, 667, 966
BmsI	GCATC	1 cut(s)	450
BmtI	GCTAGC	1 cut(s)	479
BpiI	GAAGAC	1 cut(s)	446
Bpu10I	CCTNAGC	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	667
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	308, 608, 941
BsaWI	WCCGGW	3 cut(s)	259, 328, 499
Bsc4I	CCNNNNNNNGG	4 cut(s)	314, 624, 700, 971
Bse1I	ACTGG	3 cut(s)	518, 626, 905
Bse8I	GATNNNNATC	1 cut(s)	330
BseAI	TCCGGA	2 cut(s)	259, 328
BseBI	CCWGG	4 cut(s)	96, 309, 522, 966
BseDI	CCNNGG	3 cut(s)	308, 608, 941
BseGI	GGATG	3 cut(s)	142, 208, 462
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	4 cut(s)	314, 624, 700, 971
BseMII	CTCAG	2 cut(s)	647, 765
BseNI	ACTGG	3 cut(s)	518, 626, 905
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	5 cut(s)	497, 580, 772, 900, 976
BseYI	CCCAGC	1 cut(s)	813
Bsh1236I	CGCG	1 cut(s)	789
BshFI	GGCC	3 cut(s)	59, 152, 520
BshNI	GGYRCC	1 cut(s)	961
BsiSI	CCGG	4 cut(s)	260, 329, 500, 666
BslI	CCNNNNNNNGG	4 cut(s)	314, 624, 700, 971
BsmAI	GTCTC	1 cut(s)	259
BsmBI	CGTCTC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	3 cut(s)	59, 152, 520
Bsp13I	TCCGGA	2 cut(s)	259, 328
Bsp1407I	TGTACA	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	941
Bsp68I	TCGCGA	1 cut(s)	789
BspACI	CCGC	4 cut(s)	60, 99, 569, 691
BspANI	GGCC	3 cut(s)	59, 152, 520
BspCNI	CTCAG	2 cut(s)	646, 766
BspEI	TCCGGA	2 cut(s)	259, 328
BspFNI	CGCG	1 cut(s)	789
BspLI	GGNNCC	2 cut(s)	400, 963
BspMAI	CTGCAG	2 cut(s)	840, 994
BspOI	GCTAGC	1 cut(s)	479
BspPI	GGATC	7 cut(s)	20, 320, 339, 393, 406, 582, 840
BspT107I	GGYRCC	1 cut(s)	961
BspTI	CTTAAG	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	3 cut(s)	518, 626, 905
BssECI	CCNNGG	3 cut(s)	308, 608, 941
BssT1I	CCWWGG	2 cut(s)	608, 941
Bst2UI	CCWGG	4 cut(s)	96, 309, 522, 966
Bst4CI	ACNGT	1 cut(s)	438
Bst6I	CTCTTC	1 cut(s)	727
BstAFI	CTTAAG	1 cut(s)	335
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	3 cut(s)	42, 477, 853
BstDEI	CTNAG	3 cut(s)	131, 633, 774
BstDSI	CCRYGG	1 cut(s)	941
BstF5I	GGATG	3 cut(s)	142, 208, 462
BstFNI	CGCG	1 cut(s)	789
BstH2I	RGCGCY	2 cut(s)	119, 587
BstHHI	GCGC	2 cut(s)	118, 586
BstMAI	GTCTC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 485, 494, 568, 590, 861, 910
BstNI	CCWGG	4 cut(s)	96, 309, 522, 966
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	5 cut(s)	94, 307, 520, 665, 964
BstSFI	CTRYAG	2 cut(s)	836, 990
BstUI	CGCG	1 cut(s)	789
BstV1I	GCAGC	5 cut(s)	497, 580, 772, 900, 976
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	3 cut(s)	331, 398, 832
BstYI	RGATCY	3 cut(s)	331, 398, 832
BsuI	GTATCC	2 cut(s)	413, 673
BsuRI	GGCC	3 cut(s)	59, 152, 520
BtgI	CCRYGG	1 cut(s)	941
BtsCI	GGATG	3 cut(s)	142, 208, 462
BtsIMutI	CAGTG	2 cut(s)	443, 488
BtuMI	TCGCGA	1 cut(s)	789
Cac8I	GCNNGC	3 cut(s)	42, 477, 853
CfoI	GCGC	2 cut(s)	118, 586
Cfr13I	GGNCC	2 cut(s)	101, 868
CsiI	ACCWGGT	1 cut(s)	964
Csp6I	GTAC	5 cut(s)	190, 286, 313, 460, 962
CviAII	CATG	5 cut(s)	164, 752, 793, 942, 956
CviQI	GTAC	5 cut(s)	190, 286, 313, 460, 962
DdeI	CTNAG	3 cut(s)	131, 633, 774
EaeI	YGGCCR	1 cut(s)	518
Eam1104I	CTCTTC	1 cut(s)	727
EarI	CTCTTC	1 cut(s)	727
Eco130I	CCWWGG	2 cut(s)	608, 941
Eco47I	GGWCC	2 cut(s)	101, 868
Eco57I	CTGAAG	2 cut(s)	199, 440
EcoRII	CCWGG	4 cut(s)	94, 307, 520, 964
EcoT14I	CCWWGG	2 cut(s)	608, 941
ErhI	CCWWGG	2 cut(s)	608, 941
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	5 cut(s)	167, 755, 796, 945, 959
FalI	AAGNNNNNCTT	4 cut(s)	185, 217, 882, 914
FatI	CATG	5 cut(s)	163, 751, 792, 941, 955
FauI	CCCGC	1 cut(s)	698
FbaI	TGATCA	2 cut(s)	382, 504
Fnu4HI	GCNGC	6 cut(s)	60, 486, 594, 761, 914, 990
FokI	GGATG	3 cut(s)	149, 195, 449
Fsp4HI	GCNGC	6 cut(s)	60, 486, 594, 761, 914, 990
FspBI	CTAG	2 cut(s)	120, 476
GlaI	GCGC	2 cut(s)	117, 585
GluI	GCNGC	6 cut(s)	60, 486, 594, 761, 914, 990
GsaI	CCCAGC	1 cut(s)	817
HaeII	RGCGCY	2 cut(s)	119, 587
HaeIII	GGCC	3 cut(s)	59, 152, 520
HapII	CCGG	4 cut(s)	260, 329, 500, 666
HhaI	GCGC	2 cut(s)	118, 586
Hin1II	CATG	5 cut(s)	167, 755, 796, 945, 959
Hin6I	GCGC	2 cut(s)	116, 584
HinP1I	GCGC	2 cut(s)	116, 584
HincII	GTYRAC	1 cut(s)	615
HindII	GTYRAC	1 cut(s)	615
HindIII	AAGCTT	2 cut(s)	896, 935
HinfI	GANTC	2 cut(s)	776, 946
HpaI	GTTAAC	1 cut(s)	615
HpaII	CCGG	4 cut(s)	260, 329, 500, 666
HphI	GGTGA	3 cut(s)	392, 514, 896
Hpy166II	GTNNAC	4 cut(s)	104, 286, 615, 974
Hpy188I	TCNGA	3 cut(s)	78, 398, 636
Hpy188III	TCNNGA	6 cut(s)	225, 260, 329, 445, 729, 788
Hpy8I	GTNNAC	4 cut(s)	104, 286, 615, 974
HpyAV	CCTTC	2 cut(s)	223, 854
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4V	TGCA	6 cut(s)	441, 719, 838, 916, 992, 1022
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 485, 494, 568, 590, 861, 910
HpyF3I	CTNAG	3 cut(s)	131, 633, 774
Hsp92II	CATG	5 cut(s)	167, 755, 796, 945, 959
HspAI	GCGC	2 cut(s)	116, 584
Kpn2I	TCCGGA	2 cut(s)	259, 328
KpnI	GGTACC	1 cut(s)	965
Ksp22I	TGATCA	2 cut(s)	382, 504
KspAI	GTTAAC	1 cut(s)	615
LmnI	GCTCC	4 cut(s)	373, 482, 502, 810
Lsp1109I	GCAGC	5 cut(s)	497, 580, 772, 900, 976
LweI	GCATC	1 cut(s)	450
MabI	ACCWGGT	1 cut(s)	964
MaeI	CTAG	2 cut(s)	120, 476
MaeIII	GTNAC	2 cut(s)	754, 884
MboII	GAAGA	5 cut(s)	153, 284, 446, 744, 902
MflI	RGATCY	3 cut(s)	331, 398, 832
MlsI	TGGCCA	1 cut(s)	520
MluCI	AATT	5 cut(s)	403, 414, 638, 818, 1029
MluNI	TGGCCA	1 cut(s)	520
MlyI	GAGTC	1 cut(s)	785
MmeI	TCCRAC	3 cut(s)	13, 101, 781
MnlI	CCTC	7 cut(s)	3, 84, 364, 425, 477, 576, 952
Mox20I	TGGCCA	1 cut(s)	520
MroI	TCCGGA	2 cut(s)	259, 328
MroXI	GAANNNNTTC	1 cut(s)	936
MscI	TGGCCA	1 cut(s)	520
MseI	TTAA	4 cut(s)	6, 336, 614, 1016
MslI	CAYNNNNRTG	1 cut(s)	954
Msp20I	TGGCCA	1 cut(s)	520
MspA1I	CMGCKG	2 cut(s)	388, 989
MspCI	CTTAAG	1 cut(s)	335
MspI	CCGG	4 cut(s)	260, 329, 500, 666
MspR9I	CCNGG	5 cut(s)	96, 309, 522, 667, 966
Mva1269I	GAATGC	1 cut(s)	721
MvaI	CCWGG	4 cut(s)	96, 309, 522, 966
MvnI	CGCG	1 cut(s)	789
MwoI	GCNNNNNNNGC	7 cut(s)	56, 485, 494, 568, 590, 861, 910
NciI	CCSGG	1 cut(s)	667
NcoI	CCATGG	1 cut(s)	941
NheI	GCTAGC	1 cut(s)	475
NlaIII	CATG	5 cut(s)	167, 755, 796, 945, 959
NlaIV	GGNNCC	2 cut(s)	400, 963
NmuCI	GTSAC	2 cut(s)	754, 884
NruI	TCGCGA	1 cut(s)	789
NspI	RCATGY	1 cut(s)	755
PciI	ACATGT	1 cut(s)	751
PctI	GAATGC	1 cut(s)	721
PdmI	GAANNNNTTC	1 cut(s)	936
PfeI	GAWTC	1 cut(s)	946
PflMI	CCANNNNNTGG	1 cut(s)	971
PfoI	TCCNGGA	1 cut(s)	665
PkrI	GCNGC	6 cut(s)	61, 487, 595, 762, 915, 991
PleI	GAGTC	1 cut(s)	784
PpsI	GAGTC	1 cut(s)	784
PscI	ACATGT	1 cut(s)	751
Psp6I	CCWGG	4 cut(s)	94, 307, 520, 964
PspFI	CCCAGC	1 cut(s)	813
PspGI	CCWGG	4 cut(s)	94, 307, 520, 964
PspN4I	GGNNCC	2 cut(s)	400, 963
PspPI	GGNCC	2 cut(s)	101, 868
PstI	CTGCAG	2 cut(s)	840, 994
PsuI	RGATCY	3 cut(s)	331, 398, 832
PvuII	CAGCTG	2 cut(s)	388, 989
RruI	TCGCGA	1 cut(s)	789
RsaI	GTAC	5 cut(s)	191, 287, 314, 461, 963
RsaNI	GTAC	5 cut(s)	190, 286, 313, 460, 962
RseI	CAYNNNNRTG	1 cut(s)	954
SaqAI	TTAA	4 cut(s)	6, 336, 614, 1016
SatI	GCNGC	6 cut(s)	60, 486, 594, 761, 914, 990
Sau96I	GGNCC	2 cut(s)	101, 868
SchI	GAGTC	1 cut(s)	785
ScrFI	CCNGG	5 cut(s)	96, 309, 522, 667, 966
SexAI	ACCWGGT	1 cut(s)	964
SfaNI	GCATC	1 cut(s)	450
SfcI	CTRYAG	2 cut(s)	836, 990
SinI	GGWCC	2 cut(s)	101, 868
SmiMI	CAYNNNNRTG	1 cut(s)	954
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	5 cut(s)	403, 414, 638, 818, 1029
SsiI	CCGC	4 cut(s)	60, 99, 569, 691
SspMI	CTAG	2 cut(s)	120, 476
StyD4I	CCNGG	5 cut(s)	94, 307, 520, 665, 964
StyI	CCWWGG	2 cut(s)	608, 941
TaaI	ACNGT	1 cut(s)	438
TaqI	TCGA	2 cut(s)	300, 589
TaqII	GACCGA	1 cut(s)	856
TasI	AATT	5 cut(s)	403, 414, 638, 818, 1029
TatI	WGTACW	3 cut(s)	189, 285, 459
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	946
Tru1I	TTAA	4 cut(s)	6, 336, 614, 1016
Tru9I	TTAA	4 cut(s)	6, 336, 614, 1016
TscAI	CASTG	2 cut(s)	443, 495
TseFI	GTSAC	2 cut(s)	754, 884
TseI	GCWGC	5 cut(s)	485, 593, 760, 913, 989
Tsp45I	GTSAC	2 cut(s)	754, 884
TspDTI	ATGAA	2 cut(s)	10, 197
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	2 cut(s)	443, 495
Van91I	CCANNNNNTGG	1 cut(s)	971
Vha464I	CTTAAG	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	101, 868
XapI	RAATTY	2 cut(s)	638, 818
XceI	RCATGY	1 cut(s)	755
XmnI	GAANNNNTTC	1 cut(s)	936
XspI	CTAG	2 cut(s)	120, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.