Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016943.1

Orthogroup ID

OG0001884

Physical Location & Seq

Genomic Coordinates Forward (+)

4574 .. 5030

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016943.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgtttaggagagtcgcatttttgttgttggttggattgctggcatgggcttatcaggccacccaaccgccccctccgaagatttgcggttcccccgggggcccacccatcacagctcctagaataaagctaagagatggaagatatttggcctacaaggagcatggtgtgtcaaaacaagtggccagatataagattatctttgttcatgggttcggctcttccagacatgatgcagtgattgccaccaaaccttcagcagaatttatcgaagagttaggggtacacattgtgtctttggacagaccaggctatggtgaaagtgatccagatcctaagcgttggctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

116

Amino Acids

12.88

Weight (kDa)

9.72

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22460 AT5G22460 AT5G22460
fragaria_vesca	FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_7g05600
malus_domestica	MD07G1064300.v1.1 MD07G1064500.v1.1 MD11G1163800.v1.1
prunus_persica	Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1
pyrus_communis	pycom03g09790
rosa_chinensis	RchiOBHm_Chr5g0044301 RchiOBHm_Chr5g0044321 RchiOBHm_Chr5g0044331
rosa_laevigata	RLG00000034264 RLG00000034265
rosa_multiflora	Rmu_co8240737.1_g000001 Rmu_co8478079.1_g000001 Rmu_sc0002307.1_g000004 Rmu_sc0004741.1_g000022 Rmu_sc0015666.1_g000005 Rmu_sc0016943.1_g000002 Rmu_sc0039604.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036650 Rroxscaffold_1G00036660 Rroxscaffold_4G00311410 Rroxscaffold_7G00192630
rosa_rugosa	Rorug05G0212900 Rorug05G0213000 Rorug05G0213100
rosa_samantha	Rh3CG234200 Rh5AG297600 Rh5BG304900 Rh5BG305000 Rh5CG331800 Rh5CG331900 Rh5DG314100 Rh5DG314200
rosa_wichuraiana	Rw5G027540 Rw5G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	314
AciI	CCGC	2 cut(s)	68, 87
AclWI	GGATC	2 cut(s)	320, 326
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	292
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	2 cut(s)	116, 130
AluI	AGCT	2 cut(s)	116, 130
AlwI	GGATC	2 cut(s)	320, 326
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	4 cut(s)	57, 100, 150, 183
ApaI	GGGCCC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	100, 101
AsuC2I	CCSGG	2 cut(s)	96, 97
AsuHPI	GGTGA	1 cut(s)	329
AvaI	CYCGRG	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	104
BccI	CCATC	2 cut(s)	116, 131
BciT130I	CCWGG	1 cut(s)	309
BcnI	CCSGG	2 cut(s)	96, 97
BfaI	CTAG	1 cut(s)	120
Bme1390I	CCNGG	3 cut(s)	96, 97, 309
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	100, 101
BmiI	GGNNCC	3 cut(s)	91, 101, 102
BmrFI	CCNGG	3 cut(s)	96, 97, 309
BmsI	GCATC	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	336
BpuMI	CCSGG	2 cut(s)	96, 97
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	94, 95, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	3 cut(s)	94, 95, 96
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	104
BshFI	GGCC	4 cut(s)	59, 102, 152, 185
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	314
BsnI	GGCC	4 cut(s)	59, 102, 152, 185
BsoBI	CYCGRG	1 cut(s)	95
Bsp120I	GGGCCC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	325, 331
BspACI	CCGC	2 cut(s)	68, 87
BspANI	GGCC	4 cut(s)	59, 102, 152, 185
BspLI	GGNNCC	3 cut(s)	91, 101, 102
BspPI	GGATC	2 cut(s)	320, 326
BspQI	GCTCTTC	1 cut(s)	226
BssECI	CCNNGG	3 cut(s)	94, 95, 96
BssMI	GATC	2 cut(s)	325, 331
Bst2UI	CCWGG	1 cut(s)	309
Bst6I	CTCTTC	2 cut(s)	226, 267
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	131, 336
BstKTI	GATC	2 cut(s)	328, 334
BstMBI	GATC	2 cut(s)	325, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 242
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	3 cut(s)	94, 95, 307
BstSLI	GKGCMC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	4 cut(s)	59, 102, 152, 185
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	100, 101
Cfr9I	CCCGGG	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	284
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	4 cut(s)	45, 164, 209, 230
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	2 cut(s)	131, 336
DpnI	GATC	2 cut(s)	327, 333
DpnII	GATC	2 cut(s)	325, 331
DraIII	CACNNNGTG	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	2 cut(s)	226, 267
EarI	CTCTTC	2 cut(s)	226, 267
Eco24I	GRGCYC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	104
FaeI	CATG	4 cut(s)	48, 167, 212, 233
FaiI	YATR	6 cut(s)	46, 165, 192, 210, 231, 315
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	4 cut(s)	44, 163, 208, 229
FriOI	GRGCYC	1 cut(s)	104
FspBI	CTAG	1 cut(s)	120
HaeIII	GGCC	4 cut(s)	59, 102, 152, 185
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	4 cut(s)	48, 167, 212, 233
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	2 cut(s)	225, 329
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	1 cut(s)	264
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 242
HpyF3I	CTNAG	2 cut(s)	131, 336
Hsp92II	CATG	4 cut(s)	48, 167, 212, 233
Kzo9I	GATC	2 cut(s)	325, 331
LguI	GCTCTTC	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	121, 160
LpnPI	CCDG	8 cut(s)	26, 41, 109, 199, 238, 294, 321, 342
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	120
MalI	GATC	2 cut(s)	327, 333
MboI	GATC	2 cut(s)	325, 331
MboII	GAAGA	4 cut(s)	91, 153, 213, 284
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	1 cut(s)	263
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	1 cut(s)	84
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	185
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	3 cut(s)	96, 97, 309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	56, 242
NciI	CCSGG	2 cut(s)	96, 97
NdeII	GATC	2 cut(s)	325, 331
NlaIII	CATG	4 cut(s)	48, 167, 212, 233
NlaIV	GGNNCC	3 cut(s)	91, 101, 102
PciSI	GCTCTTC	1 cut(s)	226
PflMI	CCANNNNNTGG	1 cut(s)	314
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	3 cut(s)	91, 101, 102
PspOMI	GGGCCC	1 cut(s)	100
PspPI	GGNCC	2 cut(s)	100, 101
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SapI	GCTCTTC	1 cut(s)	226
Sau3AI	GATC	2 cut(s)	325, 331
Sau96I	GGNCC	2 cut(s)	100, 101
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	3 cut(s)	96, 97, 309
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	3 cut(s)	118, 132, 256
SfaNI	GCATC	1 cut(s)	223
SmaI	CCCGGG	1 cut(s)	97
Sse9I	AATT	1 cut(s)	263
SsiI	CCGC	2 cut(s)	68, 87
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	3 cut(s)	94, 95, 307
TaqI	TCGA	1 cut(s)	270
TasI	AATT	1 cut(s)	263
TscAI	CASTG	1 cut(s)	243
TspDTI	ATGAA	1 cut(s)	197
TspMI	CCCGGG	1 cut(s)	95
TspRI	CASTG	1 cut(s)	243
Van91I	CCANNNNNTGG	1 cut(s)	314
XapI	RAATTY	1 cut(s)	263
XmaI	CCCGGG	1 cut(s)	95
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.