Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001884

Physical Location & Seq

Genomic Coordinates Reverse (-)

6034670 .. 6035700

Gene Structure 1031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1064300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTTTCCCGCCAAGATTGGGAAACCATTAGGAATGCAAAGGTTTGTGGAAGAGAAAAGCACAAGGAACATGTCACGCAGCGAGGAGAAGCTGAGTCCATCTTTCGCGACATCATAATTGGATTTGGGAGCTGGGAATTTGATCCTACGGATCTGAAGAACCCTTTTGTCAACAACGAAGGCTCGGTCCATCTATGGCAGGGTGACGAAGATAAGCTTGTCCCAGTTGAGCTGCAACGCTATATTGCCGAAAAGCTTCCATGGATTCACTACCATGAGTTACCAGGTGGTGGACATTTGTTGCCAGCTGTAGATGGTATGAGTGAAGTCATCTTAAAGGCACTTCTAATTAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

120

Amino Acids

13.73

Weight (kDa)

5.49

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22460 AT5G22460 AT5G22460
fragaria_vesca	FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_7g05600
malus_domestica	MD07G1064300.v1.1 MD07G1064500.v1.1 MD11G1163800.v1.1
prunus_persica	Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1
pyrus_communis	pycom03g09790
rosa_chinensis	RchiOBHm_Chr5g0044301 RchiOBHm_Chr5g0044321 RchiOBHm_Chr5g0044331
rosa_laevigata	RLG00000034264 RLG00000034265
rosa_multiflora	Rmu_co8240737.1_g000001 Rmu_co8478079.1_g000001 Rmu_sc0002307.1_g000004 Rmu_sc0004741.1_g000022 Rmu_sc0015666.1_g000005 Rmu_sc0016943.1_g000002 Rmu_sc0039604.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036650 Rroxscaffold_1G00036660 Rroxscaffold_4G00311410 Rroxscaffold_7G00192630
rosa_rugosa	Rorug05G0212900 Rorug05G0213000 Rorug05G0213100
rosa_samantha	Rh3CG234200 Rh5AG297600 Rh5BG304900 Rh5BG305000 Rh5CG331800 Rh5CG331900 Rh5DG314100 Rh5DG314200
rosa_wichuraiana	Rw5G027540 Rw5G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	290
AccII	CGCG	1 cut(s)	108
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	2 cut(s)	137, 159
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	19, 290
AflIII	ACRYGT	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	6 cut(s)	92, 132, 217, 232, 256, 308
AluI	AGCT	6 cut(s)	92, 132, 217, 232, 256, 308
AlwI	GGATC	2 cut(s)	137, 159
ApeKI	GCWGC	2 cut(s)	79, 232
ApoI	RAATTY	1 cut(s)	137
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	91, 219
BccI	CCATC	3 cut(s)	107, 198, 308
BciT130I	CCWGG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	2 cut(s)	80, 233
BlsI	GCNGC	2 cut(s)	81, 234
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	285
BmrI	ACTGGG	1 cut(s)	218
BmuI	ACTGGG	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 290
Bse1I	ACTGG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	260
BseLI	CCNNNNNNNGG	2 cut(s)	19, 290
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	91, 219
BseYI	CCCAGC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	19, 290
BsmFI	GGGAC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	142, 151
Bsp19I	CCATGG	1 cut(s)	260
Bsp68I	TCGCGA	1 cut(s)	108
BspACI	CCGC	1 cut(s)	10
BspCNI	CTCAG	1 cut(s)	85
BspFNI	CGCG	1 cut(s)	108
BspPI	GGATC	2 cut(s)	137, 159
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	2 cut(s)	142, 151
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	285
Bst6I	CTCTTC	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	260
BstFNI	CGCG	1 cut(s)	108
BstKTI	GATC	2 cut(s)	145, 154
BstMBI	GATC	2 cut(s)	142, 151
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	309
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	91, 219
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	260
BtuMI	TCGCGA	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	187
CsiI	ACCWGGT	1 cut(s)	283
CviAII	CATG	3 cut(s)	71, 261, 275
CviJI	RGCY	7 cut(s)	92, 132, 183, 217, 232, 256, 308
CviKI_1	RGCY	7 cut(s)	92, 132, 183, 217, 232, 256, 308
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	2 cut(s)	144, 153
DpnII	GATC	2 cut(s)	142, 151
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	3 cut(s)	74, 264, 278
FaiI	YATR	7 cut(s)	72, 116, 196, 243, 262, 276, 320
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	3 cut(s)	70, 260, 274
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	80, 233
Fsp4HI	GCNGC	2 cut(s)	80, 233
GluI	GCNGC	2 cut(s)	80, 233
GsaI	CCCAGC	1 cut(s)	136
Hin1II	CATG	3 cut(s)	74, 264, 278
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	2 cut(s)	215, 254
HinfI	GANTC	2 cut(s)	95, 265
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	172, 293
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	2 cut(s)	172, 293
HpyAV	CCTTC	1 cut(s)	173
HpyCH4V	TGCA	2 cut(s)	38, 235
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	74, 264, 278
Kzo9I	GATC	2 cut(s)	142, 151
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	6 cut(s)	118, 185, 237, 270, 297, 318
Lsp1109I	GCAGC	2 cut(s)	91, 219
MabI	ACCWGGT	1 cut(s)	283
MaeIII	GTNAC	3 cut(s)	73, 203, 279
MalI	GATC	2 cut(s)	144, 153
MboI	GATC	2 cut(s)	142, 151
MboII	GAAGA	3 cut(s)	63, 169, 221
MflI	RGATCY	1 cut(s)	151
MluCI	AATT	3 cut(s)	117, 137, 348
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	2 cut(s)	335, 351
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	108
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	142, 151
NlaIII	CATG	3 cut(s)	74, 264, 278
NmuCI	GTSAC	2 cut(s)	73, 203
NruI	TCGCGA	1 cut(s)	108
NspI	RCATGY	1 cut(s)	74
PciI	ACATGT	1 cut(s)	70
PctI	GAATGC	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	265
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	81, 234
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PscI	ACATGT	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	308
RruI	TCGCGA	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	335, 351
SatI	GCNGC	2 cut(s)	80, 233
Sau3AI	GATC	2 cut(s)	142, 151
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	8 cut(s)	45, 94, 134, 219, 234, 258, 289, 310
SexAI	ACCWGGT	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	3 cut(s)	117, 137, 348
SsiI	CCGC	1 cut(s)	10
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	260
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	3 cut(s)	117, 137, 348
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	2 cut(s)	335, 351
Tru9I	TTAA	2 cut(s)	335, 351
TseFI	GTSAC	2 cut(s)	73, 203
TseI	GCWGC	2 cut(s)	79, 232
Tsp45I	GTSAC	2 cut(s)	73, 203
TspGWI	ACGGA	1 cut(s)	164
Van91I	CCANNNNNTGG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	1 cut(s)	137
XceI	RCATGY	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.