Rh5CG331900
ERF Family

BEST Arabidopsis thaliana protein match is alpha beta-Hydrolases superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001884
Physical Location & Seq
Forward (+)
37400958 .. 37401938
981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG331900.1

Sequence Viewer

Length: 594 bp
ATGCTTCTTACTTATTGTCGATACATCACTTGCAGATTGTTAGGAGCTTCCCTGGTAGTTCCTTTTGTGAACTACTGGTGGCCTCGTATTCCTGCTAATCTATTGAGAGAGTCCTTTCAGAGGCTGCAGGTATCGGACCAACGGACATTCCAAGTTGCACATTACACCCCATGGTTACTTCATTGGTGGATGACCCAGAAATGGTTCACTGCATTAAGTATCATGGCTGGAAATATGGAGATCTTCTGCCCCAAAGATTTAGAAACATTGAAGAAACTTTCAGATTCCCCAAGTGTTGGTCAGGAAAAGATACAGCAGCAAGGAGAACACGAATCTCTCTACCGAGACCTACTGGCTGGCTATGGAAAATGGGAATTCGACCCCATAGACTTAACGAATCCATTTCCTAACAATGAGGGTTCAGTTCACATTTGGCAAGGCTATGCAGACAGGATCATTCCATATAAAGTAAACCGTTACATTGCAGAGAAGCTTCCCTGGATTCATTATCACGAAGTTCCTGATTATGGGCATTTGCTTATTTTTGAGAGTGATCACTGTGAGGCTGTTTTGAAGGCACTCTTGCGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

197

Amino Acids

23.27

Weight (kDa)

6.44

Isoelectric Point (pI)

30.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 118
AccB7I CCANNNNNTGG 1 cut(s) 296
AclWI GGATC 1 cut(s) 461
AcsI RAATTY 1 cut(s) 374
AfiI CCNNNNNNNGG 4 cut(s) 120, 201, 296, 527
AgsI TTSAA 2 cut(s) 271, 574
AjnI CCWGG 2 cut(s) 51, 497
AluBI AGCT 2 cut(s) 47, 493
AluI AGCT 2 cut(s) 47, 493
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 1 cut(s) 461
AlwNI CAGNNNCTG 1 cut(s) 124
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 124, 316
ApoI RAATTY 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 136
AvaII GGWCC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 111, 328
BciT130I CCWGG 2 cut(s) 53, 499
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 339
BfmI CTRYAG 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 118
BglII AGATCT 1 cut(s) 240
BisI GCNGC 2 cut(s) 125, 317
BlsI GCNGC 2 cut(s) 126, 318
Bme1390I CCNGG 2 cut(s) 53, 499
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 53, 499
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 51, 170, 497
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 201, 296, 527
Bse1I ACTGG 2 cut(s) 80, 357
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 2 cut(s) 53, 499
BseDI CCNNGG 3 cut(s) 51, 170, 497
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 4 cut(s) 120, 201, 296, 527
BseMI GCAATG 1 cut(s) 480
BseNI ACTGG 2 cut(s) 80, 357
BseXI GCAGC 2 cut(s) 111, 328
BshFI GGCC 1 cut(s) 82
BslI CCNNNNNNNGG 4 cut(s) 120, 201, 296, 527
BsmAI GTCTC 1 cut(s) 339
BsnI GGCC 1 cut(s) 82
Bso31I GGTCTC 1 cut(s) 339
Bsp143I GATC 3 cut(s) 240, 453, 553
Bsp19I CCATGG 1 cut(s) 170
BspANI GGCC 1 cut(s) 82
BspMAI CTGCAG 1 cut(s) 129
BspMI ACCTGC 1 cut(s) 118
BspPI GGATC 1 cut(s) 461
BspTNI GGTCTC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 2 cut(s) 80, 357
BssECI CCNNGG 3 cut(s) 51, 170, 497
BssMI GATC 3 cut(s) 240, 453, 553
BssT1I CCWWGG 1 cut(s) 170
Bst2UI CCWGG 2 cut(s) 53, 499
Bst4CI ACNGT 2 cut(s) 476, 560
BstC8I GCNNGC 1 cut(s) 358
BstDSI CCRYGG 1 cut(s) 170
BstENI CCTNNNNNAGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 195
BstKTI GATC 3 cut(s) 243, 456, 556
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 3 cut(s) 240, 453, 553
BstNI CCWGG 2 cut(s) 53, 499
BstSCI CCNGG 2 cut(s) 51, 497
BstSFI CTRYAG 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 111, 328
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 1 cut(s) 195
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 207, 556
BveI ACCTGC 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 358
CaiI CAGNNNCTG 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 136
CviAII CATG 2 cut(s) 171, 223
CviJI RGCY 9 cut(s) 47, 82, 124, 227, 356, 360, 441, 493, 566
CviKI_1 RGCY 9 cut(s) 47, 82, 124, 227, 356, 360, 441, 493, 566
DpnI GATC 3 cut(s) 242, 455, 555
DpnII GATC 3 cut(s) 240, 453, 553
Eco130I CCWWGG 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 136
EcoNI CCTNNNNNAGG 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 374
EcoRII CCWGG 2 cut(s) 51, 497
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 2 cut(s) 174, 226
FaiI YATR 9 cut(s) 172, 224, 236, 363, 386, 444, 463, 465, 528
FalI AAGNNNNNCTT 1 cut(s) 566
FatI CATG 2 cut(s) 170, 222
FbaI TGATCA 1 cut(s) 553
Fnu4HI GCNGC 2 cut(s) 125, 317
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 2 cut(s) 125, 317
GluI GCNGC 2 cut(s) 125, 317
HaeIII GGCC 1 cut(s) 82
Hin1II CATG 2 cut(s) 174, 226
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 5 cut(s) 110, 284, 332, 397, 502
Hpy166II GTNNAC 4 cut(s) 70, 207, 427, 472
Hpy188I TCNGA 3 cut(s) 120, 136, 283
Hpy188III TCNNGA 3 cut(s) 302, 512, 521
Hpy8I GTNNAC 4 cut(s) 70, 207, 427, 472
HpyAV CCTTC 1 cut(s) 568
HpyCH4III ACNGT 2 cut(s) 476, 560
HpyCH4V TGCA 6 cut(s) 33, 127, 158, 212, 446, 485
Hsp92II CATG 2 cut(s) 174, 226
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 3 cut(s) 240, 453, 553
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 2 cut(s) 111, 328
MaeIII GTNAC 2 cut(s) 174, 476
MalI GATC 3 cut(s) 242, 455, 555
MboI GATC 3 cut(s) 240, 453, 553
MboII GAAGA 2 cut(s) 235, 283
MflI RGATCY 1 cut(s) 240
MluCI AATT 1 cut(s) 374
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 4 cut(s) 93, 114, 409, 556
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 2 cut(s) 215, 392
MspR9I CCNGG 2 cut(s) 53, 499
MvaI CCWGG 2 cut(s) 53, 499
NcoI CCATGG 1 cut(s) 170
NdeII GATC 3 cut(s) 240, 453, 553
NlaIII CATG 2 cut(s) 174, 226
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 4 cut(s) 284, 332, 397, 502
PflMI CCANNNNNTGG 1 cut(s) 296
PkrI GCNGC 2 cut(s) 126, 318
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 51, 497
PspGI CCWGG 2 cut(s) 51, 497
PspPI GGNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 129
PstNI CAGNNNCTG 1 cut(s) 124
PsuI RGATCY 1 cut(s) 240
SaqAI TTAA 2 cut(s) 215, 392
SatI GCNGC 2 cut(s) 125, 317
Sau3AI GATC 3 cut(s) 240, 453, 553
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 53, 499
SetI ASST 4 cut(s) 49, 132, 351, 495
SfcI CTRYAG 1 cut(s) 125
SinI GGWCC 1 cut(s) 136
Sse9I AATT 1 cut(s) 374
StyD4I CCNGG 2 cut(s) 51, 497
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 2 cut(s) 476, 560
TaqI TCGA 2 cut(s) 19, 378
TasI AATT 1 cut(s) 374
TfiI GAWTC 4 cut(s) 284, 332, 397, 502
Tru1I TTAA 2 cut(s) 215, 392
Tru9I TTAA 2 cut(s) 215, 392
TscAI CASTG 2 cut(s) 214, 563
TseI GCWGC 2 cut(s) 124, 316
TspDTI ATGAA 2 cut(s) 170, 494
TspGWI ACGGA 1 cut(s) 157
TspRI CASTG 2 cut(s) 214, 563
Van91I CCANNNNNTGG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 136
XagI CCTNNNNNAGG 1 cut(s) 118
XapI RAATTY 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.