Rmu_co8240737.1_g000001

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8240737.1
OG0001884
Physical Location & Seq
Forward (+)
366 .. 734
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8240737.1_g000001.1.cds

Sequence Viewer

Length: 282 bp
atgacagggatgatatcaaacacagctgtggtggtgatgggtttcttgggaatgctttacatggcaacaactcagcttccacctccacagacctctgctctgcctgaagatcctcctccaacatctccaagaatcaggcttgctgatgggaggcatctggcttacagagaaactggggtccccaagaacaaatcaaggttcaagatcatcatagttcatggctttggaagctctaaagaaatgagtttccaggcaccccaagtaatacacataaatctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

93

Amino Acids

10.19

Weight (kDa)

9.99

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 253
AclWI GGATC 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 126
AgsI TTSAA 1 cut(s) 202
AjnI CCWGG 1 cut(s) 249
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 3 cut(s) 26, 76, 231
AluI AGCT 3 cut(s) 26, 76, 231
AlwI GGATC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 178
BanI GGYRCC 1 cut(s) 253
BccI CCATC 2 cut(s) 31, 140
BciT130I CCWGG 1 cut(s) 251
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 3 cut(s) 179, 180, 255
BmrFI CCNGG 1 cut(s) 251
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 163
BmuI ACTGGG 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 105
BshNI GGYRCC 1 cut(s) 253
BslFI GGGAC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 109, 204
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 3 cut(s) 179, 180, 255
BspPI GGATC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 253
BsrI ACTGG 1 cut(s) 178
BssMI GATC 2 cut(s) 109, 204
Bst2UI CCWGG 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 15
BstKTI GATC 2 cut(s) 112, 207
BstMBI GATC 2 cut(s) 109, 204
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BtsCI GGATG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 178
CviAII CATG 2 cut(s) 61, 218
CviJI RGCY 6 cut(s) 26, 76, 139, 161, 222, 231
CviKI_1 RGCY 6 cut(s) 26, 76, 139, 161, 222, 231
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 111, 206
DpnII GATC 2 cut(s) 109, 204
Eco32I GATATC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 249
EcoRV GATATC 1 cut(s) 15
FaeI CATG 2 cut(s) 64, 221
FaiI YATR 4 cut(s) 62, 212, 219, 272
FaqI GGGAC 1 cut(s) 164
FatI CATG 2 cut(s) 60, 217
FokI GGATG 1 cut(s) 22
Hin1II CATG 2 cut(s) 64, 221
HinfI GANTC 1 cut(s) 132
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 281
Hpy188III TCNNGA 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 2 cut(s) 64, 221
KflI GGGWCCC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 109, 204
LpnPI CCDG 6 cut(s) 117, 121, 143, 159, 236, 263
LweI GCATC 1 cut(s) 163
MalI GATC 2 cut(s) 111, 206
MboI GATC 2 cut(s) 109, 204
MboII GAAGA 1 cut(s) 119
MflI RGATCY 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 5 cut(s) 93, 103, 123, 126, 144
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 251
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 228
NdeII GATC 2 cut(s) 109, 204
NlaIII CATG 2 cut(s) 64, 221
NlaIV GGNNCC 3 cut(s) 179, 180, 255
OliI CACNNNNGTG 1 cut(s) 26
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 132
PpuMI RGGWCCY 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 3 cut(s) 179, 180, 255
PspPI GGNCC 1 cut(s) 178
PspPPI RGGWCCY 1 cut(s) 178
PsuI RGATCY 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 26
Sau3AI GATC 2 cut(s) 109, 204
Sau96I GGNCC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 251
SetI ASST 6 cut(s) 28, 78, 85, 95, 200, 233
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 249
TfiI GAWTC 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.