Rroxscaffold_4G00311410
ERF Family

BEST Arabidopsis thaliana protein match is alpha beta-Hydrolases superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001884
Physical Location & Seq
Forward (+)
33955099 .. 33959826
4728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00311410.1

Sequence Viewer

Length: 363 bp
ATGGCAAGTTACCAAGCACTAAAGCCTCCCCCTCCTAAAATATGCGGTTCGCCTGGTGGTCCTCCCGTCACTTCACCTAGAGTGAAAGTGATGGTAGATATTTGGCCTATAGGGAGTTTGGAGTGCCTAAAGAAGAGGCAAAACACAAGATCATCATCATTCATGGCTTTGGCAGTTCCAAAGATCTGGCTTTACCTATTTCTCAAGGTCCGGTGGGCGAACCGCTACTCCGAGGATTTGATGGCCTTCGCTAGCTGTCACACGAGAGACAGGGCGTTAGAGGGAGACCACGTTGGGCGGTCTTCACTTATCCGATGCCTAAGTCGGTCAATGCATATAGGCAACATAACAATAAAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

120

Amino Acids

13.47

Weight (kDa)

9.97

Isoelectric Point (pI)

71.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 45, 223, 298
AjnI CCWGG 1 cut(s) 52
AloI GAACNNNNNNTCC 2 cut(s) 212, 244
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 261, 279
AoxI GGCC 2 cut(s) 104, 243
AspS9I GGNCC 2 cut(s) 59, 208
AsuHPI GGTGA 1 cut(s) 66
AsuNHI GCTAGC 1 cut(s) 251
AvaII GGWCC 2 cut(s) 59, 208
BauI CACGAG 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 294
BccI CCATC 2 cut(s) 85, 235
BciT130I CCWGG 1 cut(s) 54
BcoDI GTCTC 2 cut(s) 261, 279
BfaI CTAG 2 cut(s) 78, 252
BfmI CTRYAG 1 cut(s) 108
BglII AGATCT 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 54
Bme18I GGWCC 2 cut(s) 59, 208
BmgT120I GGNCC 2 cut(s) 59, 208
BmrFI CCNGG 1 cut(s) 54
BmsI GCATC 1 cut(s) 305
BmtI GCTAGC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 154
BsaI GGTCTC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 231
BsaWI WCCGGW 1 cut(s) 210
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 276, 306
Bse8I GATNNNNATC 1 cut(s) 154
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 231
BseJI GATNNNNATC 1 cut(s) 154
BshFI GGCC 2 cut(s) 106, 245
BsiSI CCGG 1 cut(s) 211
BsmAI GTCTC 2 cut(s) 261, 279
BsnI GGCC 2 cut(s) 106, 245
Bso31I GGTCTC 1 cut(s) 279
Bsp143I GATC 2 cut(s) 149, 183
BspACI CCGC 3 cut(s) 45, 223, 298
BspANI GGCC 2 cut(s) 106, 245
BspOI GCTAGC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 2 cut(s) 149, 183
BssSI CACGAG 1 cut(s) 262
Bst2BI CACGAG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 54
Bst6I CTCTTC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 320
BstKTI GATC 2 cut(s) 152, 186
BstMAI GTCTC 2 cut(s) 261, 279
BstMBI GATC 2 cut(s) 149, 183
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 52
BstSFI CTRYAG 1 cut(s) 108
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 186
BstYI RGATCY 1 cut(s) 183
BsuRI GGCC 2 cut(s) 106, 245
Cac8I GCNNGC 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 59, 208
CviAII CATG 1 cut(s) 163
CviJI RGCY 6 cut(s) 25, 106, 167, 190, 245, 255
CviKI_1 RGCY 6 cut(s) 25, 106, 167, 190, 245, 255
DdeI CTNAG 1 cut(s) 320
DpnI GATC 2 cut(s) 151, 185
DpnII GATC 2 cut(s) 149, 183
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 279
Eco47I GGWCC 2 cut(s) 59, 208
EcoRII CCWGG 1 cut(s) 52
EcoT22I ATGCAT 1 cut(s) 336
FaeI CATG 1 cut(s) 166
FaiI YATR 6 cut(s) 43, 110, 164, 336, 338, 347
FatI CATG 1 cut(s) 162
FspBI CTAG 2 cut(s) 78, 252
HaeIII GGCC 2 cut(s) 106, 245
HapII CCGG 1 cut(s) 211
Hin1II CATG 1 cut(s) 166
HpaII CCGG 1 cut(s) 211
HphI GGTGA 1 cut(s) 66
Hpy188I TCNGA 2 cut(s) 232, 314
HpyAV CCTTC 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 1 cut(s) 334
HpyF3I CTNAG 1 cut(s) 320
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 1 cut(s) 166
Kzo9I GATC 2 cut(s) 149, 183
LpnPI CCDG 5 cut(s) 39, 66, 172, 224, 256
LweI GCATC 1 cut(s) 305
MaeI CTAG 2 cut(s) 78, 252
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 8, 67, 257
MalI GATC 2 cut(s) 151, 185
MboI GATC 2 cut(s) 149, 183
MboII GAAGA 2 cut(s) 145, 294
MflI RGATCY 1 cut(s) 183
MnlI CCTC 6 cut(s) 36, 42, 72, 129, 226, 274
Mph1103I ATGCAT 1 cut(s) 336
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 54
NdeII GATC 2 cut(s) 149, 183
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 1 cut(s) 166
NmuCI GTSAC 2 cut(s) 67, 257
NsiI ATGCAT 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspPI GGNCC 2 cut(s) 59, 208
PsuI RGATCY 1 cut(s) 183
Sau3AI GATC 2 cut(s) 149, 183
Sau96I GGNCC 2 cut(s) 59, 208
ScrFI CCNGG 1 cut(s) 54
SetI ASST 5 cut(s) 79, 198, 210, 257, 294
SfaNI GCATC 1 cut(s) 305
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 2 cut(s) 59, 208
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SsiI CCGC 3 cut(s) 45, 223, 298
SspMI CTAG 2 cut(s) 78, 252
StyD4I CCNGG 1 cut(s) 52
TaiI ACGT 1 cut(s) 294
TaqII GACCGA 1 cut(s) 315
TseFI GTSAC 2 cut(s) 67, 257
Tsp45I GTSAC 2 cut(s) 67, 257
TspDTI ATGAA 1 cut(s) 151
VpaK11BI GGWCC 2 cut(s) 59, 208
XspI CTAG 2 cut(s) 78, 252
Zsp2I ATGCAT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.