Rorug05G0213000
ERF Family

BEST Arabidopsis thaliana protein match is alpha beta-Hydrolases superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001884
Physical Location & Seq
Forward (+)
21858309 .. 21859038
730 bp
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UTR
Exon/CDS
Intron
Rorug05G0213000.1

Sequence Viewer

Length: 504 bp
ATGTGTCTTCATTATCAAACTCTTAACAAGCCGTTGACTATTGCTACAACTGACGAGTTAAATGATATTGTAACGTCAGCGAATATTCAAAGGTCTACTAGAGGTCTAGAAAGAGAAGTGCGGCGAAAGACAAGACGGTTGAATTTTGAGAAGCTGCATTCTCAGCTTAATGTTAAAATACCGGTCACTTTGATACAACATAATGAAAGGCCCACAGGTCCATATGCAGAATTGTTCGTGAATGATATTAGCTTAATAGTTAGGAACTTTGCACCTATGAATAGTAAGTTCGACATTAACATGTCTCTTCCTTGGGTCAAGAGATATGTAAACAAGATGTGTATGGCGGCATTTTTTAAATTCCGTTATAGGCTAAAGAAGTATTTTGAGAAATACTCAACAGTGGATGAAGCACGAGAAAACAAGCCTGAAGCAGTTAAAACTCAAGCAGAATGGGATTTTCTTTGTACTCGTTTTTCTAGTGAAGAGTTACAGGTATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

167

Amino Acids

19.79

Weight (kDa)

9.51

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 95
AciI CCGC 2 cut(s) 121, 347
AcsI RAATTY 2 cut(s) 142, 359
AcuI CTGAAG 1 cut(s) 450
AfaI GTAC 1 cut(s) 469
AflIII ACRYGT 1 cut(s) 300
AgeI ACCGGT 1 cut(s) 181
AgsI TTSAA 2 cut(s) 89, 142
AluBI AGCT 3 cut(s) 154, 166, 252
AluI AGCT 3 cut(s) 154, 166, 252
Alw26I GTCTC 1 cut(s) 309
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 154
ApoI RAATTY 2 cut(s) 142, 359
AsiGI ACCGGT 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 210, 218
AvaII GGWCC 1 cut(s) 218
BauI CACGAG 1 cut(s) 414
BbvI GCAGC 1 cut(s) 141
BceAI ACGGC 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 3 cut(s) 99, 107, 480
BisI GCNGC 3 cut(s) 122, 155, 348
BlsI GCNGC 3 cut(s) 123, 156, 349
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 210, 218
BplI GAGNNNNNCTC 2 cut(s) 380, 412
BpuEI CTTGAG 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 311
BsaWI WCCGGW 1 cut(s) 181
Bse118I RCCGGY 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 311
BseGI GGATG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 141
BshFI GGCC 1 cut(s) 211
BshTI ACCGGT 1 cut(s) 181
BsiSI CCGG 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 309
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 1 cut(s) 211
BspACI CCGC 2 cut(s) 121, 347
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 311
BssSI CACGAG 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 311
Bst2BI CACGAG 1 cut(s) 414
Bst4CI ACNGT 2 cut(s) 138, 403
Bst6I CTCTTC 2 cut(s) 312, 480
BstDEI CTNAG 2 cut(s) 162, 501
BstF5I GGATG 1 cut(s) 412
BstMAI GTCTC 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 304
BstV1I GCAGC 1 cut(s) 141
BsuRI GGCC 1 cut(s) 211
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 408
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 210, 218
Csp6I GTAC 1 cut(s) 468
CspAI ACCGGT 1 cut(s) 181
CviAII CATG 1 cut(s) 301
CviJI RGCY 7 cut(s) 31, 154, 166, 211, 252, 373, 427
CviKI_1 RGCY 7 cut(s) 31, 154, 166, 211, 252, 373, 427
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 2 cut(s) 162, 501
DraI TTTAAA 1 cut(s) 358
Eam1104I CTCTTC 2 cut(s) 312, 480
EarI CTCTTC 2 cut(s) 312, 480
Eco130I CCWWGG 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 450
EcoT14I CCWWGG 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 1 cut(s) 304
FaiI YATR 8 cut(s) 201, 223, 225, 278, 302, 327, 344, 369
FatI CATG 1 cut(s) 300
FauNDI CATATG 1 cut(s) 223
FblI GTMKAC 1 cut(s) 95
Fnu4HI GCNGC 3 cut(s) 122, 155, 348
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 3 cut(s) 122, 155, 348
FspBI CTAG 3 cut(s) 99, 107, 480
GluI GCNGC 3 cut(s) 122, 155, 348
HaeIII GGCC 1 cut(s) 211
HapII CCGG 1 cut(s) 182
Hin1II CATG 1 cut(s) 304
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HpaII CCGG 1 cut(s) 182
Hpy166II GTNNAC 3 cut(s) 36, 96, 331
Hpy188III TCNNGA 3 cut(s) 107, 238, 319
Hpy8I GTNNAC 3 cut(s) 36, 96, 331
HpyCH4III ACNGT 2 cut(s) 138, 403
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 3 cut(s) 157, 227, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 2 cut(s) 162, 501
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 1 cut(s) 304
LpnPI CCDG 4 cut(s) 195, 201, 441, 479
Lsp1109I GCAGC 1 cut(s) 141
MaeI CTAG 3 cut(s) 99, 107, 480
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 3 cut(s) 70, 184, 489
MboII GAAGA 2 cut(s) 299, 497
MluCI AATT 3 cut(s) 142, 230, 359
MnlI CCTC 1 cut(s) 95
MseI TTAA 8 cut(s) 24, 59, 168, 174, 254, 297, 357, 438
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 163
NdeI CATATG 1 cut(s) 223
NlaIII CATG 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 184
NspI RCATGY 1 cut(s) 304
PciI ACATGT 1 cut(s) 300
PctI GAATGC 1 cut(s) 157
PinAI ACCGGT 1 cut(s) 181
PkrI GCNGC 3 cut(s) 123, 156, 349
PscI ACATGT 1 cut(s) 300
PspPI GGNCC 2 cut(s) 210, 218
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 8 cut(s) 24, 59, 168, 174, 254, 297, 357, 438
SatI GCNGC 3 cut(s) 122, 155, 348
Sau96I GGNCC 2 cut(s) 210, 218
SetI ASST 9 cut(s) 77, 95, 106, 156, 168, 220, 254, 277, 498
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 444
SmoI CTYRAG 1 cut(s) 444
Sse9I AATT 3 cut(s) 142, 230, 359
SsiI CCGC 2 cut(s) 121, 347
SspI AATATT 1 cut(s) 85
SspMI CTAG 3 cut(s) 99, 107, 480
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 2 cut(s) 138, 403
TaiI ACGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 291
TasI AATT 3 cut(s) 142, 230, 359
TatI WGTACW 1 cut(s) 467
TauI GCSGC 2 cut(s) 124, 350
Tru1I TTAA 8 cut(s) 24, 59, 168, 174, 254, 297, 357, 438
Tru9I TTAA 8 cut(s) 24, 59, 168, 174, 254, 297, 357, 438
TscAI CASTG 1 cut(s) 408
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 3 cut(s) 219, 293, 423
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 1 cut(s) 408
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 2 cut(s) 142, 359
XbaI TCTAGA 1 cut(s) 106
XceI RCATGY 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 95
XspI CTAG 3 cut(s) 99, 107, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.