Rroxscaffold_1G00036660
ERF Family

BEST Arabidopsis thaliana protein match is alpha beta-Hydrolases superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001884
Physical Location & Seq
Reverse (-)
53496279 .. 53500515
4237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036660.1

Sequence Viewer

Length: 606 bp
ATGGGGGCTTACCCGGTTTGGAGTTGCTTGAAATACATACCGCACAGATTGTTAGGAGCTTCCCTGGTAGTTCCTTTTGTGAACTACTGGTGGCCTCGTATTCCTGCTAATCTATTGAGAGAGTCCTTTCAGAGGCTGCAGATATCGGACCAACGGACATTCCAAGTTGCACATTACGCCCCATGGTTACTTCATTGGTGGATGACCCAGAAATGGTTCACTGCATTAAGTATCATGGCTGGAAATATGGAGATCTTCTGCCCCAAAGATTTAGAAACATTGAAGAAACTTTCAGAATCCCCAAGTGTTGGTCAGGAAAAGATACAGCAGCAAGGAGAACACGAATCTCTCTACCGAGACCTACTGGCTGGCTATGGAAAATGGGAATTCGACCCCATAGACTTAACGAATCCATTTCCTAACAATGAGGGTTCAGTTCACATTTGGCAAGGCTATGCAGACAGGATCATTCCATATAAAGTAAACCGTTACATTGCAGAGAAGCTTCCCTGGATTCATTATCACGAAGTTCCTGATTATGGGCATTTGCTTATTTTTGAGAGTGATCTCTGTGAGGCTGTTTTGAAGGCACTCTTGCGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

201

Amino Acids

23.63

Weight (kDa)

6.44

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 308
AciI CCGC 1 cut(s) 41
AclWI GGATC 1 cut(s) 473
AcsI RAATTY 1 cut(s) 386
AfiI CCNNNNNNNGG 4 cut(s) 132, 213, 308, 539
AgsI TTSAA 3 cut(s) 31, 283, 586
AjnI CCWGG 2 cut(s) 63, 509
AluBI AGCT 2 cut(s) 59, 505
AluI AGCT 2 cut(s) 59, 505
Alw26I GTCTC 1 cut(s) 351
AlwI GGATC 1 cut(s) 473
AlwNI CAGNNNCTG 1 cut(s) 136
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 136, 328
ApoI RAATTY 1 cut(s) 386
Asp700I GAANNNNTTC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 14
AvaII GGWCC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 123, 340
BciT130I CCWGG 2 cut(s) 65, 511
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 137
BglII AGATCT 1 cut(s) 252
BisI GCNGC 2 cut(s) 137, 329
BlsI GCNGC 2 cut(s) 138, 330
Bme1390I CCNGG 3 cut(s) 14, 65, 511
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmrFI CCNGG 3 cut(s) 14, 65, 511
BpuMI CCSGG 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 351
BsaJI CCNNGG 3 cut(s) 63, 182, 509
Bsc4I CCNNNNNNNGG 4 cut(s) 132, 213, 308, 539
Bse1I ACTGG 2 cut(s) 92, 369
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 2 cut(s) 65, 511
BseDI CCNNGG 3 cut(s) 63, 182, 509
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 4 cut(s) 132, 213, 308, 539
BseMI GCAATG 1 cut(s) 492
BseNI ACTGG 2 cut(s) 92, 369
BseXI GCAGC 2 cut(s) 123, 340
BshFI GGCC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 4 cut(s) 132, 213, 308, 539
BsmAI GTCTC 1 cut(s) 351
BsnI GGCC 1 cut(s) 94
Bso31I GGTCTC 1 cut(s) 351
Bsp143I GATC 3 cut(s) 252, 465, 565
Bsp19I CCATGG 1 cut(s) 182
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 94
BspMAI CTGCAG 1 cut(s) 141
BspPI GGATC 1 cut(s) 473
BspTNI GGTCTC 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 492
BsrI ACTGG 2 cut(s) 92, 369
BssECI CCNNGG 3 cut(s) 63, 182, 509
BssMI GATC 3 cut(s) 252, 465, 565
BssT1I CCWWGG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 65, 511
Bst4CI ACNGT 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 370
BstDSI CCRYGG 1 cut(s) 182
BstENI CCTNNNNNAGG 1 cut(s) 130
BstF5I GGATG 1 cut(s) 207
BstKTI GATC 3 cut(s) 255, 468, 568
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 3 cut(s) 252, 465, 565
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 2 cut(s) 65, 511
BstSCI CCNGG 3 cut(s) 12, 63, 509
BstSFI CTRYAG 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 123, 340
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BsuRI GGCC 1 cut(s) 94
BtgI CCRYGG 1 cut(s) 182
BtsCI GGATG 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 370
CaiI CAGNNNCTG 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 148
CviAII CATG 2 cut(s) 183, 235
DpnI GATC 3 cut(s) 254, 467, 567
DpnII GATC 3 cut(s) 252, 465, 565
Eco130I CCWWGG 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 351
Eco32I GATATC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 63, 509
EcoRV GATATC 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 182
FaeI CATG 2 cut(s) 186, 238
FalI AAGNNNNNCTT 1 cut(s) 578
FatI CATG 2 cut(s) 182, 234
Fnu4HI GCNGC 2 cut(s) 137, 329
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 2 cut(s) 137, 329
GluI GCNGC 2 cut(s) 137, 329
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 14
Hin1II CATG 2 cut(s) 186, 238
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 5 cut(s) 122, 296, 344, 409, 514
HpaII CCGG 1 cut(s) 14
Hpy166II GTNNAC 4 cut(s) 82, 219, 439, 484
Hpy188I TCNGA 3 cut(s) 132, 148, 295
Hpy188III TCNNGA 3 cut(s) 314, 524, 533
Hpy8I GTNNAC 4 cut(s) 82, 219, 439, 484
HpyAV CCTTC 1 cut(s) 580
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4V TGCA 5 cut(s) 139, 170, 224, 458, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
Hsp92II CATG 2 cut(s) 186, 238
Kzo9I GATC 3 cut(s) 252, 465, 565
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 2 cut(s) 123, 340
MaeIII GTNAC 2 cut(s) 186, 488
MalI GATC 3 cut(s) 254, 467, 567
MboI GATC 3 cut(s) 252, 465, 565
MboII GAAGA 2 cut(s) 247, 295
MflI RGATCY 1 cut(s) 252
MluCI AATT 1 cut(s) 386
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 4 cut(s) 105, 126, 421, 568
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 2 cut(s) 227, 404
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 3 cut(s) 14, 65, 511
MvaI CCWGG 2 cut(s) 65, 511
MwoI GCNNNNNNNGC 1 cut(s) 176
NciI CCSGG 1 cut(s) 14
NcoI CCATGG 1 cut(s) 182
NdeII GATC 3 cut(s) 252, 465, 565
NlaIII CATG 2 cut(s) 186, 238
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 4 cut(s) 296, 344, 409, 514
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 2 cut(s) 138, 330
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Psp6I CCWGG 2 cut(s) 63, 509
PspGI CCWGG 2 cut(s) 63, 509
PspPI GGNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 252
SaqAI TTAA 2 cut(s) 227, 404
SatI GCNGC 2 cut(s) 137, 329
Sau3AI GATC 3 cut(s) 252, 465, 565
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 3 cut(s) 14, 65, 511
SetI ASST 3 cut(s) 61, 363, 507
SfcI CTRYAG 1 cut(s) 137
SinI GGWCC 1 cut(s) 148
Sse9I AATT 1 cut(s) 386
SsiI CCGC 1 cut(s) 41
StyD4I CCNGG 3 cut(s) 12, 63, 509
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 488
TaqI TCGA 1 cut(s) 390
TasI AATT 1 cut(s) 386
TfiI GAWTC 4 cut(s) 296, 344, 409, 514
Tru1I TTAA 2 cut(s) 227, 404
Tru9I TTAA 2 cut(s) 227, 404
TscAI CASTG 1 cut(s) 226
TseI GCWGC 2 cut(s) 136, 328
TspDTI ATGAA 2 cut(s) 182, 506
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 1 cut(s) 226
Van91I CCANNNNNTGG 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 148
XagI CCTNNNNNAGG 1 cut(s) 130
XapI RAATTY 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.