Rh3CG234200
ERF Family

BEST Arabidopsis thaliana protein match is alpha beta-Hydrolases superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001884
Physical Location & Seq
Reverse (-)
22210304 .. 22210654
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG234200.1

Sequence Viewer

Length: 351 bp
ATGGTTGGAGAAAATCTGTTTATACCTTATAGTTTCTATGGTTGTGTCACTAATGGTAGATCCTGTGGTATTAATTATTATTTTCTTTTTCCAGCAATGATTGCCCCAGTAGTACTAACTTTGACAGTGAGTTTTCTTGGGTGGGCATATCAGGCACTAAAGCCTCCCCCTCCTAAAATATGCGGTTCACCTGGTGGTCCTCCTGTCACTTCACCTAGAGTGAAACTCAGTGACGGTAGATATTTGGCCACAGGGAGTATGGAGTGCCTAAAGAAGAGGCAAAACACAAGATCATCATCATTCATGGCTTTGCCAGTTCCAAAGATTTGGCTTTACCTATTGCTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

116

Amino Acids

12.8

Weight (kDa)

9.7

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 183
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 246
AdeI CACNNNGTG 1 cut(s) 194
AfaI GTAC 1 cut(s) 114
AjnI CCWGG 1 cut(s) 190
AlwI GGATC 1 cut(s) 54
AoxI GGCC 1 cut(s) 246
AseI ATTAAT 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 180, 204
AvaII GGWCC 1 cut(s) 197
BalI TGGCCA 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 192
BfaI CTAG 1 cut(s) 216
BmcAI AGTACT 1 cut(s) 114
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 192
BmrI ACTGGG 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 101
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BpuEI CTTGAG 1 cut(s) 329
BsaBI GATNNNNATC 1 cut(s) 295
Bse1I ACTGG 2 cut(s) 107, 314
Bse3DI GCAATG 1 cut(s) 102
Bse8I GATNNNNATC 1 cut(s) 295
BseBI CCWGG 1 cut(s) 192
BseJI GATNNNNATC 1 cut(s) 295
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 241
BseNI ACTGG 2 cut(s) 107, 314
BshFI GGCC 1 cut(s) 248
BsnI GGCC 1 cut(s) 248
Bsp143I GATC 2 cut(s) 59, 290
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 1 cut(s) 240
BspPI GGATC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 102
BsrI ACTGG 2 cut(s) 107, 314
BssMI GATC 2 cut(s) 59, 290
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 127, 236
Bst6I CTCTTC 1 cut(s) 269
BstAPI GCANNNNNTGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 227
BstKTI GATC 2 cut(s) 62, 293
BstMBI GATC 2 cut(s) 59, 290
BstMWI GCNNNNNNNGC 2 cut(s) 101, 152
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 59
BstXI CCANNNNNNTGG 1 cut(s) 327
BstYI RGATCY 1 cut(s) 59
BsuRI GGCC 1 cut(s) 248
BtsIMutI CAGTG 2 cut(s) 132, 235
Cfr13I GGNCC 1 cut(s) 197
CsiI ACCWGGT 1 cut(s) 190
Csp6I GTAC 1 cut(s) 113
CviAII CATG 1 cut(s) 304
CviJI RGCY 4 cut(s) 163, 248, 308, 331
CviKI_1 RGCY 4 cut(s) 163, 248, 308, 331
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 1 cut(s) 227
DpnI GATC 2 cut(s) 61, 292
DpnII GATC 2 cut(s) 59, 290
DraIII CACNNNGTG 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 190
FaeI CATG 1 cut(s) 307
FaiI YATR 7 cut(s) 23, 30, 39, 148, 181, 260, 305
FatI CATG 1 cut(s) 303
FspBI CTAG 1 cut(s) 216
HaeIII GGCC 1 cut(s) 248
Hin1II CATG 1 cut(s) 307
HphI GGTGA 2 cut(s) 180, 204
Hpy166II GTNNAC 1 cut(s) 188
Hpy8I GTNNAC 1 cut(s) 188
HpyCH4III ACNGT 2 cut(s) 127, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 152
HpyF3I CTNAG 1 cut(s) 227
Hsp92II CATG 1 cut(s) 307
Kzo9I GATC 2 cut(s) 59, 290
LpnPI CCDG 9 cut(s) 76, 105, 120, 137, 177, 204, 216, 237, 327
MabI ACCWGGT 1 cut(s) 190
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 3 cut(s) 46, 205, 230
MalI GATC 2 cut(s) 61, 292
MboI GATC 2 cut(s) 59, 290
MboII GAAGA 1 cut(s) 286
MflI RGATCY 1 cut(s) 59
MlsI TGGCCA 1 cut(s) 248
MluCI AATT 1 cut(s) 73
MluNI TGGCCA 1 cut(s) 248
MnlI CCTC 4 cut(s) 174, 180, 210, 270
Mox20I TGGCCA 1 cut(s) 248
MscI TGGCCA 1 cut(s) 248
MseI TTAA 1 cut(s) 72
Msp20I TGGCCA 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 101, 152
NdeII GATC 2 cut(s) 59, 290
NlaIII CATG 1 cut(s) 307
NmuCI GTSAC 3 cut(s) 46, 205, 230
PshBI ATTAAT 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspPI GGNCC 1 cut(s) 197
PsuI RGATCY 1 cut(s) 59
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 72
Sau3AI GATC 2 cut(s) 59, 290
Sau96I GGNCC 1 cut(s) 197
ScaI AGTACT 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 192
SetI ASST 4 cut(s) 28, 193, 217, 339
SexAI ACCWGGT 1 cut(s) 190
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 1 cut(s) 73
SsiI CCGC 1 cut(s) 183
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 127, 236
TasI AATT 1 cut(s) 73
TatI WGTACW 1 cut(s) 112
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 2 cut(s) 132, 235
TseFI GTSAC 3 cut(s) 46, 205, 230
Tsp45I GTSAC 3 cut(s) 46, 205, 230
TspDTI ATGAA 1 cut(s) 292
TspRI CASTG 2 cut(s) 132, 235
VpaK11BI GGWCC 1 cut(s) 197
VspI ATTAAT 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XspI CTAG 1 cut(s) 216
ZrmI AGTACT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.