Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001884

Physical Location & Seq

Genomic Coordinates Reverse (-)

6040555 .. 6041051

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1064500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTTTAAGAGGATCACATTCATCTTGTTGGTTGGATTGCTGGCGTGGGCGTATCAGGCCGCCCGACCACCACCTCCGAACATCTGTGGTTCGCCTGGCGGTCCACTCGTCACAGCGTCTAGAATAAGGCTAAGGGATGGAAGATTTTTGGCCTACAAGGAACATGGTGTTCCAAAACAAGTGACCAAGTACAAGATTATCTTTGTTCATCCCTTCTTTAGTTCCCGACATGATCCAATCATTGCAACAGCCGTCTCTCCGGAAGTTATTGAAGATTTAGGTGTGTACATTGTGTCTTTCGACAGACCAGGGCACGGTGAAAGTGATCCGGATCCTAAGCGAACAACGAAAAGCTTGGCGTTAGATATAGATGTTGTCCTGTTCATGAGCTTACTGAGTTTATTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

137

Amino Acids

15.06

Weight (kDa)

9.41

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22460 AT5G22460 AT5G22460
fragaria_vesca	FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_7g05600
malus_domestica	MD07G1064300.v1.1 MD07G1064500.v1.1 MD11G1163800.v1.1
prunus_persica	Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1
pyrus_communis	pycom03g09790
rosa_chinensis	RchiOBHm_Chr5g0044301 RchiOBHm_Chr5g0044321 RchiOBHm_Chr5g0044331
rosa_laevigata	RLG00000034264 RLG00000034265
rosa_multiflora	Rmu_co8240737.1_g000001 Rmu_co8478079.1_g000001 Rmu_sc0002307.1_g000004 Rmu_sc0004741.1_g000022 Rmu_sc0015666.1_g000005 Rmu_sc0016943.1_g000002 Rmu_sc0039604.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036650 Rroxscaffold_1G00036660 Rroxscaffold_4G00311410 Rroxscaffold_7G00192630
rosa_rugosa	Rorug05G0212900 Rorug05G0213000 Rorug05G0213100
rosa_samantha	Rh3CG234200 Rh5AG297600 Rh5BG304900 Rh5BG305000 Rh5CG331800 Rh5CG331900 Rh5DG314100 Rh5DG314200
rosa_wichuraiana	Rw5G027540 Rw5G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	259, 328
AciI	CCGC	2 cut(s)	60, 99
AclWI	GGATC	5 cut(s)	20, 227, 320, 326, 339
AfaI	GTAC	2 cut(s)	191, 287
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	272
AjnI	CCWGG	2 cut(s)	94, 307
AluBI	AGCT	2 cut(s)	354, 390
AluI	AGCT	2 cut(s)	354, 390
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	5 cut(s)	20, 227, 320, 326, 339
Aor13HI	TCCGGA	2 cut(s)	259, 328
AoxI	GGCC	2 cut(s)	57, 150
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	315
BamHI	GGATCC	1 cut(s)	331
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	2 cut(s)	96, 309
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	2 cut(s)	96, 309
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	2 cut(s)	96, 309
Bpu10I	CCTNAGC	2 cut(s)	131, 336
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	308
BsaWI	WCCGGW	2 cut(s)	259, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	330
BseAI	TCCGGA	2 cut(s)	259, 328
BseBI	CCWGG	2 cut(s)	96, 309
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	2 cut(s)	142, 208
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	386
BseSI	GKGCMC	1 cut(s)	315
BshFI	GGCC	2 cut(s)	59, 152
BsiSI	CCGG	2 cut(s)	260, 329
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	259
BsmBI	CGTCTC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	59, 152
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp13I	TCCGGA	2 cut(s)	259, 328
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	4 cut(s)	12, 232, 325, 331
BspACI	CCGC	2 cut(s)	60, 99
BspANI	GGCC	2 cut(s)	59, 152
BspCNI	CTCAG	1 cut(s)	387
BspEI	TCCGGA	2 cut(s)	259, 328
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	333
BspPI	GGATC	5 cut(s)	20, 227, 320, 326, 339
BsrDI	GCAATG	1 cut(s)	240
BsrGI	TGTACA	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	4 cut(s)	12, 232, 325, 331
Bst2UI	CCWGG	2 cut(s)	96, 309
Bst4CI	ACNGT	1 cut(s)	317
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	3 cut(s)	131, 336, 395
BstF5I	GGATG	2 cut(s)	142, 208
BstKTI	GATC	4 cut(s)	15, 235, 328, 334
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	4 cut(s)	12, 232, 325, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	96, 309
BstSCI	CCNGG	2 cut(s)	94, 307
BstSLI	GKGCMC	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	59, 152
BtsCI	GGATG	2 cut(s)	142, 208
Cac8I	GCNNGC	1 cut(s)	42
CciI	TCATGA	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	101
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	190, 286
CviAII	CATG	3 cut(s)	164, 230, 385
CviJI	RGCY	6 cut(s)	59, 130, 152, 251, 354, 390
CviKI_1	RGCY	6 cut(s)	59, 130, 152, 251, 354, 390
CviQI	GTAC	2 cut(s)	190, 286
DdeI	CTNAG	3 cut(s)	131, 336, 395
DpnI	GATC	4 cut(s)	14, 234, 327, 333
DpnII	GATC	4 cut(s)	12, 232, 325, 331
Eco47I	GGWCC	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	94, 307
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	3 cut(s)	167, 233, 388
FaiI	YATR	5 cut(s)	165, 231, 368, 386, 409
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	3 cut(s)	163, 229, 384
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	2 cut(s)	149, 195
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	59, 152
HapII	CCGG	2 cut(s)	260, 329
HgaI	GACGC	1 cut(s)	105
Hin1II	CATG	3 cut(s)	167, 233, 388
HindIII	AAGCTT	1 cut(s)	352
HpaII	CCGG	2 cut(s)	260, 329
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	2 cut(s)	104, 286
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	5 cut(s)	120, 225, 260, 329, 385
Hpy8I	GTNNAC	2 cut(s)	104, 286
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	3 cut(s)	131, 336, 395
Hsp92II	CATG	3 cut(s)	167, 233, 388
Kpn2I	TCCGGA	2 cut(s)	259, 328
Kzo9I	GATC	4 cut(s)	12, 232, 325, 331
LpnPI	CCDG	9 cut(s)	26, 41, 81, 108, 273, 294, 321, 342, 392
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	109, 181
MalI	GATC	4 cut(s)	14, 234, 327, 333
MboI	GATC	4 cut(s)	12, 232, 325, 331
MboII	GAAGA	2 cut(s)	153, 284
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	315
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	2 cut(s)	3, 84
MroI	TCCGGA	2 cut(s)	259, 328
MseI	TTAA	1 cut(s)	6
MspI	CCGG	2 cut(s)	260, 329
MspR9I	CCNGG	2 cut(s)	96, 309
MvaI	CCWGG	2 cut(s)	96, 309
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	4 cut(s)	12, 232, 325, 331
NlaIII	CATG	3 cut(s)	167, 233, 388
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	2 cut(s)	109, 181
PagI	TCATGA	1 cut(s)	384
PkrI	GCNGC	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	94, 307
PspGI	CCWGG	2 cut(s)	94, 307
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	2 cut(s)	191, 287
RsaNI	GTAC	2 cut(s)	190, 286
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	4 cut(s)	12, 232, 325, 331
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	96, 309
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	4 cut(s)	76, 283, 356, 392
SinI	GGWCC	1 cut(s)	101
SsiI	CCGC	2 cut(s)	60, 99
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	94, 307
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	1 cut(s)	300
TatI	WGTACW	2 cut(s)	189, 285
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseFI	GTSAC	2 cut(s)	109, 181
Tsp45I	GTSAC	2 cut(s)	109, 181
TspDTI	ATGAA	3 cut(s)	10, 197, 373
VpaK11BI	GGWCC	1 cut(s)	101
XbaI	TCTAGA	1 cut(s)	119
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.