Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002307.1

Orthogroup ID

OG0001884

Physical Location & Seq

Genomic Coordinates Reverse (-)

40864 .. 41445

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002307.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgtttaggagagtcgcatttttgttgttggttggattgctggcatgggcttatcaggccacccaaccgccccctccgaagatctgcggatcccccggcggcccacccatcacagctcctagaataaagctaagagatggaagatatttggcctacaaggagcatggtgtgtcaaaacaagtggccagatataagattatctttgttcatggctttggttcttccagacatgatgcagtgattgcaaccaaaacctcaccagaagttatcgaagagttaggggtacacattgtgtcttttgacagaccaggctatggtgaaagtgatccagatcctaagcgaacagtgaagagtttggctttagatatagaagagcttgctgaccagctcagattcggatccaaattttatgtagttggaaattctatgggtggacaggttatctggagctgtcttcagtacatccctcataggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

158

Amino Acids

17.55

Weight (kDa)

9.45

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22460 AT5G22460 AT5G22460
fragaria_vesca	FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_7g05600
malus_domestica	MD07G1064300.v1.1 MD07G1064500.v1.1 MD11G1163800.v1.1
prunus_persica	Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1
pyrus_communis	pycom03g09790
rosa_chinensis	RchiOBHm_Chr5g0044301 RchiOBHm_Chr5g0044321 RchiOBHm_Chr5g0044331
rosa_laevigata	RLG00000034264 RLG00000034265
rosa_multiflora	Rmu_co8240737.1_g000001 Rmu_co8478079.1_g000001 Rmu_sc0002307.1_g000004 Rmu_sc0004741.1_g000022 Rmu_sc0015666.1_g000005 Rmu_sc0016943.1_g000002 Rmu_sc0039604.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036650 Rroxscaffold_1G00036660 Rroxscaffold_4G00311410 Rroxscaffold_7G00192630
rosa_rugosa	Rorug05G0212900 Rorug05G0213000 Rorug05G0213100
rosa_samantha	Rh3CG234200 Rh5AG297600 Rh5BG304900 Rh5BG305000 Rh5CG331800 Rh5CG331900 Rh5DG314100 Rh5DG314200
rosa_wichuraiana	Rw5G027540 Rw5G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	314
AciI	CCGC	3 cut(s)	68, 87, 99
AclWI	GGATC	6 cut(s)	84, 97, 320, 326, 393, 406
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	404, 421
AcuI	CTGAAG	1 cut(s)	440
AdeI	CACNNNGTG	1 cut(s)	292
AfaI	GTAC	2 cut(s)	285, 461
AfiI	CCNNNNNNNGG	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	5 cut(s)	116, 130, 376, 388, 450
AluI	AGCT	5 cut(s)	116, 130, 376, 388, 450
AlwI	GGATC	6 cut(s)	84, 97, 320, 326, 393, 406
AoxI	GGCC	4 cut(s)	57, 100, 150, 183
ApoI	RAATTY	2 cut(s)	404, 421
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	2 cut(s)	249, 329
BalI	TGGCCA	1 cut(s)	185
BamHI	GGATCC	2 cut(s)	89, 398
BbsI	GAAGAC	1 cut(s)	446
BccI	CCATC	2 cut(s)	116, 131
BciT130I	CCWGG	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	96
BfaI	CTAG	1 cut(s)	120
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
Bme1390I	CCNGG	2 cut(s)	96, 309
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	91, 400
BmrFI	CCNGG	2 cut(s)	96, 309
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	466
Bpu10I	CCTNAGC	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	96
BsaBI	GATNNNNATC	2 cut(s)	330, 397
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse8I	GATNNNNATC	2 cut(s)	330, 397
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	462
BseJI	GATNNNNATC	2 cut(s)	330, 397
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	403
BshFI	GGCC	4 cut(s)	59, 102, 152, 185
BsiSI	CCGG	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	314
BsnI	GGCC	4 cut(s)	59, 102, 152, 185
Bsp143I	GATC	5 cut(s)	81, 89, 325, 331, 398
BspACI	CCGC	3 cut(s)	68, 87, 99
BspANI	GGCC	4 cut(s)	59, 102, 152, 185
BspCNI	CTCAG	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	91, 400
BspPI	GGATC	6 cut(s)	84, 97, 320, 326, 393, 406
BspQI	GCTCTTC	1 cut(s)	366
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	5 cut(s)	81, 89, 325, 331, 398
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	3 cut(s)	267, 344, 366
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	42, 378
BstDEI	CTNAG	3 cut(s)	131, 336, 389
BstF5I	GGATG	1 cut(s)	462
BstKTI	GATC	5 cut(s)	84, 92, 328, 334, 401
BstMBI	GATC	5 cut(s)	81, 89, 325, 331, 398
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 242
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	2 cut(s)	94, 307
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	4 cut(s)	81, 89, 331, 398
BstYI	RGATCY	4 cut(s)	81, 89, 331, 398
BsuRI	GGCC	4 cut(s)	59, 102, 152, 185
BtsCI	GGATG	1 cut(s)	462
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	243, 351
Cac8I	GCNNGC	2 cut(s)	42, 378
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	284, 460
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	4 cut(s)	45, 164, 209, 230
CviQI	GTAC	2 cut(s)	284, 460
DdeI	CTNAG	3 cut(s)	131, 336, 389
DpnI	GATC	5 cut(s)	83, 91, 327, 333, 400
DpnII	GATC	5 cut(s)	81, 89, 325, 331, 398
DraIII	CACNNNGTG	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	3 cut(s)	267, 344, 366
EarI	CTCTTC	3 cut(s)	267, 344, 366
Eco57I	CTGAAG	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	307
FaeI	CATG	4 cut(s)	48, 167, 212, 233
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	4 cut(s)	44, 163, 208, 229
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	1 cut(s)	449
Fsp4HI	GCNGC	1 cut(s)	100
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	466
HaeIII	GGCC	4 cut(s)	59, 102, 152, 185
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	4 cut(s)	48, 167, 212, 233
HinfI	GANTC	2 cut(s)	12, 393
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	2 cut(s)	249, 329
Hpy166II	GTNNAC	2 cut(s)	286, 434
Hpy188I	TCNGA	3 cut(s)	78, 392, 398
Hpy188III	TCNNGA	3 cut(s)	225, 329, 445
Hpy8I	GTNNAC	2 cut(s)	286, 434
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	2 cut(s)	236, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 242
HpyF3I	CTNAG	3 cut(s)	131, 336, 389
Hsp92II	CATG	4 cut(s)	48, 167, 212, 233
Kzo9I	GATC	5 cut(s)	81, 89, 325, 331, 398
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	3 cut(s)	121, 160, 447
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	120
MalI	GATC	5 cut(s)	83, 91, 327, 333, 400
MboI	GATC	5 cut(s)	81, 89, 325, 331, 398
MboII	GAAGA	7 cut(s)	91, 153, 213, 284, 361, 383, 446
MflI	RGATCY	4 cut(s)	81, 89, 331, 398
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	2 cut(s)	404, 421
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	21
MmeI	TCCRAC	2 cut(s)	13, 397
MnlI	CCTC	3 cut(s)	84, 265, 477
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	185
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	2 cut(s)	96, 309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	56, 242
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	5 cut(s)	81, 89, 325, 331, 398
NlaIII	CATG	4 cut(s)	48, 167, 212, 233
NlaIV	GGNNCC	2 cut(s)	91, 400
PciSI	GCTCTTC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	393
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	101
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	91, 400
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	4 cut(s)	81, 89, 331, 398
RsaI	GTAC	2 cut(s)	285, 461
RsaNI	GTAC	2 cut(s)	284, 460
SapI	GCTCTTC	1 cut(s)	366
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	5 cut(s)	81, 89, 325, 331, 398
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	2 cut(s)	96, 309
SetI	ASST	8 cut(s)	118, 132, 257, 378, 390, 441, 452, 476
SfaNI	GCATC	1 cut(s)	223
Sse9I	AATT	2 cut(s)	404, 421
SsiI	CCGC	3 cut(s)	68, 87, 99
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	94, 307
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	404, 421
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	393
TscAI	CASTG	2 cut(s)	243, 351
TspDTI	ATGAA	1 cut(s)	197
TspRI	CASTG	2 cut(s)	243, 351
Van91I	CCANNNNNTGG	1 cut(s)	314
XapI	RAATTY	2 cut(s)	404, 421
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.