Rh5DG314200
ERF Family

BEST Arabidopsis thaliana protein match is alpha beta-Hydrolases superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001884
Physical Location & Seq
Forward (+)
40293793 .. 40295692
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG314200.1

Sequence Viewer

Length: 1152 bp
ATGATTGCACCAGTAGTACTAGCTTTGACAGTGGGTTTTCTTGGGTGGGCTTATCAGGCACTAAAGCCTCCCCCTCCCAAAATATGTGGTTCACCTGACGGTCCTCCTGTCACTTCACCTAGAGTGAAACTCAGTGATGGTAGATATTTGGCCTACAGGGAGTTTGGAGTGCCTAAAGAAGAGGCAAAACACAAGATCATCATCATTTATGGCTTTAACAGTTCCAAAGATTCGGCTTTACCTATTGCTCAAGAACTCATTGACAAGTTAAGGCTATATTTCCTCTTCTTTGACAGAGCTGGTTATGGCGAAAGTGATCCATATCCGTCACGCTCAGTGAAGAGTGAAGCATACGATATTCAAGAACTAGCCGACAGGTTGCAGATTGGATCCAAATTCTATCTACTTGGAGTCTCAATGGGGGCTTACTCTGTTTGGAGTTGCTTAAAATATATACCGCACAGGCATGCTACTTACTTCAAGAGCCATGCCACTATTGTTATGTTTTTTGTTTTGAGTAATGCTTCTGCTGTGATTTTTATAAAGTTTGTTGTAAAGCATGCTTCTTACAGATGGTCGATACATCACTTGCAGATTGTTAGGAGCTTCCCTGGTAGTTCCTTTTGGAACTACTGGTGGCCTCGTATTCCTGCTAATCTATTGAGAGAGACCTTACAGCGGCTGCAGGTGTCGGACCAACGGACATTCCAAGTTGCACATTACACCCCATGGTTGCTTCATTGGTGGATGACCCAGAAATGGTTCACTACATTAAGTATCATGGCTGGAAATATTGGGATCTTCTGCCCCAAAGATTTAGAAATATTGAAGAAACTTTCAGAATCCCCAAGTGTTGGTCAGGAAAAGATAAGGCAGCAAGGAGAACATGAATCTCTCTACCGAGACCTACTGGCTGGCTATGGAAAATGGGAATTCGACCCTATAGACTTAACGAATCCATTTCCTAACAACGAAGGTTCAGTTCACATTTGGCAAGGTTATGCAGACAGGATCATTCGATATAAAGTAAACCGTTATATTGCAGAGAAGCTTCCCTGGATTCATTATCACGAAGTTCCTGATTATGGGCATTTGCTTATTTTTGAGAGTGATCTATGTGAGGCTGTTTTGAAGGCACTCTTGCTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

383

Amino Acids

44.22

Weight (kDa)

8.99

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 85 - 371 5.8e-06 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AarI CACCTGC 1 cut(s) 676
Acc36I ACCTGC 1 cut(s) 676
AccB7I CCANNNNNTGG 1 cut(s) 854
AciI CCGC 2 cut(s) 458, 679
AclWI GGATC 5 cut(s) 311, 384, 397, 806, 1019
AcsI RAATTY 2 cut(s) 395, 932
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 4 cut(s) 678, 759, 854, 1085
AgsI TTSAA 4 cut(s) 362, 481, 829, 1132
AjnI CCWGG 2 cut(s) 610, 1055
AluBI AGCT 4 cut(s) 23, 299, 606, 1051
AluI AGCT 4 cut(s) 23, 299, 606, 1051
Alw26I GTCTC 3 cut(s) 418, 662, 897
AlwI GGATC 5 cut(s) 311, 384, 397, 806, 1019
AlwNI CAGNNNCTG 1 cut(s) 682
AoxI GGCC 2 cut(s) 150, 638
ApeKI GCWGC 2 cut(s) 682, 874
ApoI RAATTY 2 cut(s) 395, 932
Asp700I GAANNNNTTC 1 cut(s) 761
AspS9I GGNCC 2 cut(s) 101, 694
AsuHPI GGTGA 2 cut(s) 84, 108
AvaII GGWCC 2 cut(s) 101, 694
BamHI GGATCC 1 cut(s) 389
BbvI GCAGC 2 cut(s) 669, 886
BccI CCATC 2 cut(s) 131, 567
BciT130I CCWGG 2 cut(s) 612, 1057
BcoDI GTCTC 3 cut(s) 418, 662, 897
BfaI CTAG 3 cut(s) 20, 120, 368
BfmI CTRYAG 3 cut(s) 154, 683, 942
BfuAI ACCTGC 1 cut(s) 676
BisI GCNGC 3 cut(s) 680, 683, 875
BlsI GCNGC 3 cut(s) 681, 684, 876
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 2 cut(s) 612, 1057
Bme18I GGWCC 2 cut(s) 101, 694
BmgT120I GGNCC 2 cut(s) 101, 694
BmiI GGNNCC 1 cut(s) 391
BmrFI CCNGG 2 cut(s) 612, 1057
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BpuEI CTTGAG 1 cut(s) 234
BsaBI GATNNNNATC 2 cut(s) 200, 321
BsaI GGTCTC 2 cut(s) 662, 897
BsaJI CCNNGG 3 cut(s) 610, 728, 1055
Bsc4I CCNNNNNNNGG 4 cut(s) 678, 759, 854, 1085
Bse1I ACTGG 3 cut(s) 11, 638, 915
Bse8I GATNNNNATC 2 cut(s) 200, 321
BseBI CCWGG 2 cut(s) 612, 1057
BseDI CCNNGG 3 cut(s) 610, 728, 1055
BseGI GGATG 1 cut(s) 753
BseJI GATNNNNATC 2 cut(s) 200, 321
BseLI CCNNNNNNNGG 4 cut(s) 678, 759, 854, 1085
BseMII CTCAG 2 cut(s) 145, 348
BseNI ACTGG 3 cut(s) 11, 638, 915
BseXI GCAGC 2 cut(s) 669, 886
BshFI GGCC 2 cut(s) 152, 640
BslI CCNNNNNNNGG 4 cut(s) 678, 759, 854, 1085
BsmAI GTCTC 3 cut(s) 418, 662, 897
BsnI GGCC 2 cut(s) 152, 640
Bso31I GGTCTC 2 cut(s) 662, 897
Bsp143I GATC 6 cut(s) 195, 316, 389, 798, 1011, 1111
Bsp19I CCATGG 1 cut(s) 728
BspACI CCGC 2 cut(s) 458, 679
BspANI GGCC 2 cut(s) 152, 640
BspCNI CTCAG 2 cut(s) 144, 347
BspLI GGNNCC 1 cut(s) 391
BspMAI CTGCAG 1 cut(s) 687
BspMI ACCTGC 1 cut(s) 676
BspPI GGATC 5 cut(s) 311, 384, 397, 806, 1019
BspTNI GGTCTC 2 cut(s) 662, 897
BsrI ACTGG 3 cut(s) 11, 638, 915
BssECI CCNNGG 3 cut(s) 610, 728, 1055
BssMI GATC 6 cut(s) 195, 316, 389, 798, 1011, 1111
BssT1I CCWWGG 1 cut(s) 728
Bst2UI CCWGG 2 cut(s) 612, 1057
Bst4CI ACNGT 4 cut(s) 31, 101, 221, 1034
Bst6I CTCTTC 3 cut(s) 174, 290, 335
BstC8I GCNNGC 3 cut(s) 468, 561, 916
BstDEI CTNAG 2 cut(s) 131, 334
BstDSI CCRYGG 1 cut(s) 728
BstF5I GGATG 1 cut(s) 753
BstKTI GATC 6 cut(s) 198, 319, 392, 801, 1014, 1114
BstMAI GTCTC 3 cut(s) 418, 662, 897
BstMBI GATC 6 cut(s) 195, 316, 389, 798, 1011, 1111
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 2 cut(s) 612, 1057
BstNSI RCATGY 2 cut(s) 470, 563
BstSCI CCNGG 2 cut(s) 610, 1055
BstSFI CTRYAG 3 cut(s) 154, 683, 942
BstV1I GCAGC 2 cut(s) 669, 886
BstX2I RGATCY 2 cut(s) 389, 798
BstYI RGATCY 2 cut(s) 389, 798
BsuRI GGCC 2 cut(s) 152, 640
BtgI CCRYGG 1 cut(s) 728
BtsCI GGATG 1 cut(s) 753
BtsIMutI CAGTG 3 cut(s) 36, 139, 342
BveI ACCTGC 1 cut(s) 676
Cac8I GCNNGC 3 cut(s) 468, 561, 916
CaiI CAGNNNCTG 1 cut(s) 682
Cfr13I GGNCC 2 cut(s) 101, 694
Csp6I GTAC 1 cut(s) 17
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 6 cut(s) 467, 488, 560, 729, 781, 887
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 2 cut(s) 131, 334
DpnI GATC 6 cut(s) 197, 318, 391, 800, 1013, 1113
DpnII GATC 6 cut(s) 195, 316, 389, 798, 1011, 1111
Eam1104I CTCTTC 3 cut(s) 174, 290, 335
EarI CTCTTC 3 cut(s) 174, 290, 335
Eco130I CCWWGG 1 cut(s) 728
Eco31I GGTCTC 2 cut(s) 662, 897
Eco47I GGWCC 2 cut(s) 101, 694
EcoRI GAATTC 1 cut(s) 932
EcoRII CCWGG 2 cut(s) 610, 1055
EcoT14I CCWWGG 1 cut(s) 728
ErhI CCWWGG 1 cut(s) 728
FaeI CATG 6 cut(s) 470, 491, 563, 732, 784, 890
FalI AAGNNNNNCTT 1 cut(s) 1124
FatI CATG 6 cut(s) 466, 487, 559, 728, 780, 886
Fnu4HI GCNGC 3 cut(s) 680, 683, 875
FokI GGATG 1 cut(s) 760
Fsp4HI GCNGC 3 cut(s) 680, 683, 875
FspBI CTAG 3 cut(s) 20, 120, 368
GluI GCNGC 3 cut(s) 680, 683, 875
HaeIII GGCC 2 cut(s) 152, 640
Hin1II CATG 6 cut(s) 470, 491, 563, 732, 784, 890
HindIII AAGCTT 1 cut(s) 1049
HinfI GANTC 6 cut(s) 230, 411, 842, 890, 955, 1060
HphI GGTGA 2 cut(s) 84, 108
Hpy166II GTNNAC 4 cut(s) 92, 765, 985, 1030
Hpy188I TCNGA 2 cut(s) 694, 841
Hpy188III TCNNGA 6 cut(s) 251, 362, 481, 860, 1070, 1079
Hpy8I GTNNAC 4 cut(s) 92, 765, 985, 1030
HpyAV CCTTC 2 cut(s) 968, 1126
HpyCH4III ACNGT 4 cut(s) 31, 101, 221, 1034
HpyCH4V TGCA 7 cut(s) 8, 382, 592, 685, 716, 1004, 1043
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 131, 334
Hsp92II CATG 6 cut(s) 470, 491, 563, 732, 784, 890
Kzo9I GATC 6 cut(s) 195, 316, 389, 798, 1011, 1111
LmnI GCTCC 1 cut(s) 603
Lsp1109I GCAGC 2 cut(s) 669, 886
MaeI CTAG 3 cut(s) 20, 120, 368
MaeIII GTNAC 2 cut(s) 109, 327
MalI GATC 6 cut(s) 197, 318, 391, 800, 1013, 1113
MboI GATC 6 cut(s) 195, 316, 389, 798, 1011, 1111
MboII GAAGA 5 cut(s) 191, 277, 352, 793, 841
MflI RGATCY 2 cut(s) 389, 798
MluCI AATT 2 cut(s) 395, 932
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 672
MnlI CCTC 7 cut(s) 78, 84, 114, 175, 293, 651, 1114
MroXI GAANNNNTTC 1 cut(s) 761
MseI TTAA 5 cut(s) 216, 269, 446, 773, 950
MslI CAYNNNNRTG 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 679
MspR9I CCNGG 2 cut(s) 612, 1057
MvaI CCWGG 2 cut(s) 612, 1057
MwoI GCNNNNNNNGC 1 cut(s) 56
NcoI CCATGG 1 cut(s) 728
NdeII GATC 6 cut(s) 195, 316, 389, 798, 1011, 1111
NlaIII CATG 6 cut(s) 470, 491, 563, 732, 784, 890
NlaIV GGNNCC 1 cut(s) 391
NmuCI GTSAC 2 cut(s) 109, 327
NspI RCATGY 2 cut(s) 470, 563
PaeI GCATGC 2 cut(s) 470, 563
PaqCI CACCTGC 1 cut(s) 676
PdmI GAANNNNTTC 1 cut(s) 761
PfeI GAWTC 5 cut(s) 230, 842, 890, 955, 1060
PflMI CCANNNNNTGG 1 cut(s) 854
PkrI GCNGC 3 cut(s) 681, 684, 876
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PsiI TTATAA 1 cut(s) 542
Psp6I CCWGG 2 cut(s) 610, 1055
PspGI CCWGG 2 cut(s) 610, 1055
PspN4I GGNNCC 1 cut(s) 391
PspPI GGNCC 2 cut(s) 101, 694
PstI CTGCAG 1 cut(s) 687
PstNI CAGNNNCTG 1 cut(s) 682
PsuI RGATCY 2 cut(s) 389, 798
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 5 cut(s) 216, 269, 446, 773, 950
SatI GCNGC 3 cut(s) 680, 683, 875
Sau3AI GATC 6 cut(s) 195, 316, 389, 798, 1011, 1111
Sau96I GGNCC 2 cut(s) 101, 694
ScaI AGTACT 1 cut(s) 18
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 2 cut(s) 612, 1057
SfcI CTRYAG 3 cut(s) 154, 683, 942
SinI GGWCC 2 cut(s) 101, 694
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 249
SmoI CTYRAG 1 cut(s) 249
SphI GCATGC 2 cut(s) 470, 563
Sse9I AATT 2 cut(s) 395, 932
SsiI CCGC 2 cut(s) 458, 679
SspI AATATT 2 cut(s) 793, 825
SspMI CTAG 3 cut(s) 20, 120, 368
StyD4I CCNGG 2 cut(s) 610, 1055
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 4 cut(s) 31, 101, 221, 1034
TaqI TCGA 3 cut(s) 578, 936, 1018
TasI AATT 2 cut(s) 395, 932
TatI WGTACW 1 cut(s) 16
TauI GCSGC 1 cut(s) 682
TfiI GAWTC 5 cut(s) 230, 842, 890, 955, 1060
Tru1I TTAA 5 cut(s) 216, 269, 446, 773, 950
Tru9I TTAA 5 cut(s) 216, 269, 446, 773, 950
TscAI CASTG 3 cut(s) 36, 139, 342
TseFI GTSAC 2 cut(s) 109, 327
TseI GCWGC 2 cut(s) 682, 874
Tsp45I GTSAC 2 cut(s) 109, 327
TspDTI ATGAA 3 cut(s) 728, 903, 1052
TspGWI ACGGA 2 cut(s) 315, 715
TspRI CASTG 3 cut(s) 36, 139, 342
Van91I CCANNNNNTGG 1 cut(s) 854
VpaK11BI GGWCC 2 cut(s) 101, 694
XapI RAATTY 2 cut(s) 395, 932
XceI RCATGY 2 cut(s) 470, 563
XmnI GAANNNNTTC 1 cut(s) 761
XspI CTAG 3 cut(s) 20, 120, 368
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.