RchiOBHm_Chr5g0044331
ERF Family

BEST Arabidopsis thaliana protein match is alpha beta-Hydrolases superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001884
Physical Location & Seq
Forward (+)
39651463 .. 39653361
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32254

Sequence Viewer

Length: 1089 bp
ATGATTGCACCAGTAGTACTAGCTTTGACAGTGGGTTTTCTTGGGTGGGCTTATCAGGCACTAAAGCCTCCCCCTCCCAAAATATGTGGTTCACCTGACGGTCCTCCTGTCACTTCACCTAGAGTGAAACTCAGTGATGGTAGATATTTGGCCTACAGGGAGTTTGGAGTGCCTAAAGAAGAGGCAAAACACAAGATCATCATCATTTATGGCTTTAACAGTTCCAAAGATTCGGCTTTACCTATTGCTCAAGAACTCATTGACAAGTTAAGGCTATATTTCCTCTTCTTTGACAGAGCTGGTTATGGCGAAAGTGATCCATATCCGTCACGCTCAGTGAAGAGTGAAGCATACGATATTCAAGAACTAGCCGACAGGTTGCAGATTGGATCCAAATTCTATCTACTTGGAGTCTCAATGGGGGCTTACTCTGTTTGGAGTTGCTTAAAATATATACCGCACAGGCATGCTACTTACTTCAAGAGCCATGCCACTATTGTTATGTTTTTATGGTCGATACATCACTTGCAGATTGTTAGGAGCTTCCCTGGTAGTTCCTTTTGGAACTACTGGTGGCCTCGTATTCCTGCTAATCTATTGAGAGAGACCTTACAGCGGCTGCAGGTGTCGGACCAACGGACATTCCAAGTTGCACATTACACCCCATGGTTGCTTCATTGGTGGATGACCCAGAAATGGTTCACTACATTAAGTATCATGGCTGGAAATATTGGGATCTTCTGCCCCAAAGATTTAGAAATATTGAAGAAACTTTCAGAATCCCCAAGTGTTGGTCAGGAAAAGATAAGGCAGCAAGGAGAACATGAATCTCTCTACCGAGACCTACTGGCTGGCTATGGAAAATGGGAATTCGACCCTATAGACTTAACGAATCCATTTCCTAACAACGAAGGTTCAGTTCACATTTGGCAAGGTTATGCAGACAGGATCATTCGATATAAAGTAAACCGTTATATTGCAGAGAAGCTTCCCTGGATTCATTATCACGAAGTTCCTGATTATGGGCATTTGCTTATTTTTGAGAGTGATCTATGTGAGGCTGTTTTGAAGGCACTCTTGCTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

362

Amino Acids

41.86

Weight (kDa)

8.65

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 85 - 350 1.7e-06 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 613
Acc36I ACCTGC 1 cut(s) 613
AccB7I CCANNNNNTGG 1 cut(s) 791
AciI CCGC 2 cut(s) 458, 616
AclWI GGATC 5 cut(s) 311, 384, 397, 743, 956
AcsI RAATTY 2 cut(s) 395, 869
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 4 cut(s) 615, 696, 791, 1022
AgsI TTSAA 4 cut(s) 362, 481, 766, 1069
AjnI CCWGG 2 cut(s) 547, 992
AluBI AGCT 4 cut(s) 23, 299, 543, 988
AluI AGCT 4 cut(s) 23, 299, 543, 988
Alw26I GTCTC 3 cut(s) 418, 599, 834
AlwI GGATC 5 cut(s) 311, 384, 397, 743, 956
AlwNI CAGNNNCTG 1 cut(s) 619
AoxI GGCC 2 cut(s) 150, 575
ApeKI GCWGC 2 cut(s) 619, 811
ApoI RAATTY 2 cut(s) 395, 869
Asp700I GAANNNNTTC 1 cut(s) 698
AspS9I GGNCC 2 cut(s) 101, 631
AsuHPI GGTGA 2 cut(s) 84, 108
AvaII GGWCC 2 cut(s) 101, 631
BamHI GGATCC 1 cut(s) 389
BbvI GCAGC 2 cut(s) 606, 823
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 2 cut(s) 549, 994
BcoDI GTCTC 3 cut(s) 418, 599, 834
BfaI CTAG 3 cut(s) 20, 120, 368
BfmI CTRYAG 3 cut(s) 154, 620, 879
BfuAI ACCTGC 1 cut(s) 613
BisI GCNGC 3 cut(s) 617, 620, 812
BlsI GCNGC 3 cut(s) 618, 621, 813
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 2 cut(s) 549, 994
Bme18I GGWCC 2 cut(s) 101, 631
BmgT120I GGNCC 2 cut(s) 101, 631
BmiI GGNNCC 1 cut(s) 391
BmrFI CCNGG 2 cut(s) 549, 994
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BpuEI CTTGAG 1 cut(s) 234
BsaBI GATNNNNATC 2 cut(s) 200, 321
BsaI GGTCTC 2 cut(s) 599, 834
BsaJI CCNNGG 3 cut(s) 547, 665, 992
Bsc4I CCNNNNNNNGG 4 cut(s) 615, 696, 791, 1022
Bse1I ACTGG 3 cut(s) 11, 575, 852
Bse8I GATNNNNATC 2 cut(s) 200, 321
BseBI CCWGG 2 cut(s) 549, 994
BseDI CCNNGG 3 cut(s) 547, 665, 992
BseGI GGATG 1 cut(s) 690
BseJI GATNNNNATC 2 cut(s) 200, 321
BseLI CCNNNNNNNGG 4 cut(s) 615, 696, 791, 1022
BseMII CTCAG 2 cut(s) 145, 348
BseNI ACTGG 3 cut(s) 11, 575, 852
BseXI GCAGC 2 cut(s) 606, 823
BshFI GGCC 2 cut(s) 152, 577
BslI CCNNNNNNNGG 4 cut(s) 615, 696, 791, 1022
BsmAI GTCTC 3 cut(s) 418, 599, 834
BsnI GGCC 2 cut(s) 152, 577
Bso31I GGTCTC 2 cut(s) 599, 834
Bsp143I GATC 6 cut(s) 195, 316, 389, 735, 948, 1048
Bsp19I CCATGG 1 cut(s) 665
BspACI CCGC 2 cut(s) 458, 616
BspANI GGCC 2 cut(s) 152, 577
BspCNI CTCAG 2 cut(s) 144, 347
BspLI GGNNCC 1 cut(s) 391
BspMAI CTGCAG 1 cut(s) 624
BspMI ACCTGC 1 cut(s) 613
BspPI GGATC 5 cut(s) 311, 384, 397, 743, 956
BspTNI GGTCTC 2 cut(s) 599, 834
BsrI ACTGG 3 cut(s) 11, 575, 852
BssECI CCNNGG 3 cut(s) 547, 665, 992
BssMI GATC 6 cut(s) 195, 316, 389, 735, 948, 1048
BssT1I CCWWGG 1 cut(s) 665
Bst2UI CCWGG 2 cut(s) 549, 994
Bst4CI ACNGT 4 cut(s) 31, 101, 221, 971
Bst6I CTCTTC 3 cut(s) 174, 290, 335
BstC8I GCNNGC 2 cut(s) 468, 853
BstDEI CTNAG 2 cut(s) 131, 334
BstDSI CCRYGG 1 cut(s) 665
BstF5I GGATG 1 cut(s) 690
BstKTI GATC 6 cut(s) 198, 319, 392, 738, 951, 1051
BstMAI GTCTC 3 cut(s) 418, 599, 834
BstMBI GATC 6 cut(s) 195, 316, 389, 735, 948, 1048
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 2 cut(s) 549, 994
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 2 cut(s) 547, 992
BstSFI CTRYAG 3 cut(s) 154, 620, 879
BstV1I GCAGC 2 cut(s) 606, 823
BstX2I RGATCY 2 cut(s) 389, 735
BstYI RGATCY 2 cut(s) 389, 735
BsuRI GGCC 2 cut(s) 152, 577
BtgI CCRYGG 1 cut(s) 665
BtsCI GGATG 1 cut(s) 690
BtsIMutI CAGTG 3 cut(s) 36, 139, 342
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 2 cut(s) 468, 853
CaiI CAGNNNCTG 1 cut(s) 619
Cfr13I GGNCC 2 cut(s) 101, 631
Csp6I GTAC 1 cut(s) 17
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 5 cut(s) 467, 488, 666, 718, 824
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 2 cut(s) 131, 334
DpnI GATC 6 cut(s) 197, 318, 391, 737, 950, 1050
DpnII GATC 6 cut(s) 195, 316, 389, 735, 948, 1048
Eam1104I CTCTTC 3 cut(s) 174, 290, 335
EarI CTCTTC 3 cut(s) 174, 290, 335
Eco130I CCWWGG 1 cut(s) 665
Eco31I GGTCTC 2 cut(s) 599, 834
Eco47I GGWCC 2 cut(s) 101, 631
EcoRI GAATTC 1 cut(s) 869
EcoRII CCWGG 2 cut(s) 547, 992
EcoT14I CCWWGG 1 cut(s) 665
ErhI CCWWGG 1 cut(s) 665
FaeI CATG 5 cut(s) 470, 491, 669, 721, 827
FalI AAGNNNNNCTT 1 cut(s) 1061
FatI CATG 5 cut(s) 466, 487, 665, 717, 823
Fnu4HI GCNGC 3 cut(s) 617, 620, 812
FokI GGATG 1 cut(s) 697
Fsp4HI GCNGC 3 cut(s) 617, 620, 812
FspBI CTAG 3 cut(s) 20, 120, 368
GluI GCNGC 3 cut(s) 617, 620, 812
HaeIII GGCC 2 cut(s) 152, 577
Hin1II CATG 5 cut(s) 470, 491, 669, 721, 827
HindIII AAGCTT 1 cut(s) 986
HinfI GANTC 6 cut(s) 230, 411, 779, 827, 892, 997
HphI GGTGA 2 cut(s) 84, 108
Hpy166II GTNNAC 4 cut(s) 92, 702, 922, 967
Hpy188I TCNGA 2 cut(s) 631, 778
Hpy188III TCNNGA 6 cut(s) 251, 362, 481, 797, 1007, 1016
Hpy8I GTNNAC 4 cut(s) 92, 702, 922, 967
HpyAV CCTTC 2 cut(s) 905, 1063
HpyCH4III ACNGT 4 cut(s) 31, 101, 221, 971
HpyCH4V TGCA 7 cut(s) 8, 382, 529, 622, 653, 941, 980
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 131, 334
Hsp92II CATG 5 cut(s) 470, 491, 669, 721, 827
Kzo9I GATC 6 cut(s) 195, 316, 389, 735, 948, 1048
LmnI GCTCC 1 cut(s) 540
Lsp1109I GCAGC 2 cut(s) 606, 823
MaeI CTAG 3 cut(s) 20, 120, 368
MaeIII GTNAC 2 cut(s) 109, 327
MalI GATC 6 cut(s) 197, 318, 391, 737, 950, 1050
MboI GATC 6 cut(s) 195, 316, 389, 735, 948, 1048
MboII GAAGA 5 cut(s) 191, 277, 352, 730, 778
MflI RGATCY 2 cut(s) 389, 735
MluCI AATT 2 cut(s) 395, 869
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 7 cut(s) 78, 84, 114, 175, 293, 588, 1051
MroXI GAANNNNTTC 1 cut(s) 698
MseI TTAA 5 cut(s) 216, 269, 446, 710, 887
MslI CAYNNNNRTG 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 616
MspR9I CCNGG 2 cut(s) 549, 994
MvaI CCWGG 2 cut(s) 549, 994
MwoI GCNNNNNNNGC 1 cut(s) 56
NcoI CCATGG 1 cut(s) 665
NdeII GATC 6 cut(s) 195, 316, 389, 735, 948, 1048
NlaIII CATG 5 cut(s) 470, 491, 669, 721, 827
NlaIV GGNNCC 1 cut(s) 391
NmuCI GTSAC 2 cut(s) 109, 327
NspI RCATGY 1 cut(s) 470
PaeI GCATGC 1 cut(s) 470
PaqCI CACCTGC 1 cut(s) 613
PdmI GAANNNNTTC 1 cut(s) 698
PfeI GAWTC 5 cut(s) 230, 779, 827, 892, 997
PflMI CCANNNNNTGG 1 cut(s) 791
PkrI GCNGC 3 cut(s) 618, 621, 813
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
Psp6I CCWGG 2 cut(s) 547, 992
PspGI CCWGG 2 cut(s) 547, 992
PspN4I GGNNCC 1 cut(s) 391
PspPI GGNCC 2 cut(s) 101, 631
PstI CTGCAG 1 cut(s) 624
PstNI CAGNNNCTG 1 cut(s) 619
PsuI RGATCY 2 cut(s) 389, 735
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 5 cut(s) 216, 269, 446, 710, 887
SatI GCNGC 3 cut(s) 617, 620, 812
Sau3AI GATC 6 cut(s) 195, 316, 389, 735, 948, 1048
Sau96I GGNCC 2 cut(s) 101, 631
ScaI AGTACT 1 cut(s) 18
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 2 cut(s) 549, 994
SfcI CTRYAG 3 cut(s) 154, 620, 879
SinI GGWCC 2 cut(s) 101, 631
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 249
SmoI CTYRAG 1 cut(s) 249
SphI GCATGC 1 cut(s) 470
Sse9I AATT 2 cut(s) 395, 869
SsiI CCGC 2 cut(s) 458, 616
SspI AATATT 2 cut(s) 730, 762
SspMI CTAG 3 cut(s) 20, 120, 368
StyD4I CCNGG 2 cut(s) 547, 992
StyI CCWWGG 1 cut(s) 665
TaaI ACNGT 4 cut(s) 31, 101, 221, 971
TaqI TCGA 3 cut(s) 515, 873, 955
TasI AATT 2 cut(s) 395, 869
TatI WGTACW 1 cut(s) 16
TauI GCSGC 1 cut(s) 619
TfiI GAWTC 5 cut(s) 230, 779, 827, 892, 997
Tru1I TTAA 5 cut(s) 216, 269, 446, 710, 887
Tru9I TTAA 5 cut(s) 216, 269, 446, 710, 887
TscAI CASTG 3 cut(s) 36, 139, 342
TseFI GTSAC 2 cut(s) 109, 327
TseI GCWGC 2 cut(s) 619, 811
Tsp45I GTSAC 2 cut(s) 109, 327
TspDTI ATGAA 3 cut(s) 665, 840, 989
TspGWI ACGGA 2 cut(s) 315, 652
TspRI CASTG 3 cut(s) 36, 139, 342
Van91I CCANNNNNTGG 1 cut(s) 791
VpaK11BI GGWCC 2 cut(s) 101, 631
XapI RAATTY 2 cut(s) 395, 869
XceI RCATGY 1 cut(s) 470
XmnI GAANNNNTTC 1 cut(s) 698
XspI CTAG 3 cut(s) 20, 120, 368
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.