Rh5CG331800
ERF Family

BEST Arabidopsis thaliana protein match is alpha beta-Hydrolases superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001884
Physical Location & Seq
Forward (+)
37397469 .. 37400167
2699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG331800.1

Sequence Viewer

Length: 450 bp
ATGGGCAGGTTTCAGTCTCAATCTTTGGCATTAGGAATGCAGACTACATTAGCATCTCTTCAAATTCCCCTGGAAAGGAGGGTGGCTCAATTATCACTAATATGTGCATTTAGAGGGTGGTTTGAGCTGCCTCAGCCGGGGATCACAGTCACCAGAGGAACAAGAGAGCCAGACCCTTTTCAACTTTCAGCAATGATTGCCCCAGTAGTACTAGCTTTGACAGTGGGTTTTCTTGGGTGGGCATATCAGGCACTAAAGCCTCCCCCTCCTAAAATATGCGGTTCACCTGGTGGTCCTCCTGTCACTTCACCTAGAGTGAAACTCAGTGATGGTAGATATTTGGCCTACAGGGAGTTTGGAGTGCCTAAAGAAGAAGCAAAACACAAGATCATCATCATTCATGGCTTTAGCAGTTCCAAAGATCTGGCTTTACCTGTTTCTCAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

149

Amino Acids

16.19

Weight (kDa)

9.86

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 279
AclWI GGATC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 290
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 75, 137
AgsI TTSAA 2 cut(s) 62, 182
AjnI CCWGG 2 cut(s) 69, 286
AluBI AGCT 2 cut(s) 127, 215
AluI AGCT 2 cut(s) 127, 215
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 1 cut(s) 149
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 3 cut(s) 142, 276, 300
AvaII GGWCC 1 cut(s) 293
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 114
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 2 cut(s) 71, 288
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 2 cut(s) 212, 312
BfmI CTRYAG 1 cut(s) 346
BglII AGATCT 1 cut(s) 421
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
BmcAI AGTACT 1 cut(s) 210
Bme1390I CCNGG 3 cut(s) 71, 138, 288
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 293
BmrFI CCNGG 3 cut(s) 71, 138, 288
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 197
BplI GAGNNNNNCTC 4 cut(s) 70, 102, 306, 338
Bpu10I CCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 69, 137
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 137
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 392
BseBI CCWGG 2 cut(s) 71, 288
BseDI CCNNGG 2 cut(s) 69, 137
BseJI GATNNNNATC 1 cut(s) 392
BseLI CCNNNNNNNGG 2 cut(s) 75, 137
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 146, 337
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 114
BshFI GGCC 1 cut(s) 344
BsiSI CCGG 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 75, 137
BsmAI GTCTC 1 cut(s) 21
BsmI GAATGC 1 cut(s) 42
BsnI GGCC 1 cut(s) 344
Bsp143I GATC 3 cut(s) 141, 387, 421
BspACI CCGC 1 cut(s) 279
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 2 cut(s) 145, 336
BspPI GGATC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 69, 137
BssMI GATC 3 cut(s) 141, 387, 421
Bst2UI CCWGG 2 cut(s) 71, 288
Bst4CI ACNGT 2 cut(s) 148, 223
Bst6I CTCTTC 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 197
BstDEI CTNAG 2 cut(s) 132, 323
BstKTI GATC 3 cut(s) 144, 390, 424
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 3 cut(s) 141, 387, 421
BstMWI GCNNNNNNNGC 3 cut(s) 133, 197, 248
BstNI CCWGG 2 cut(s) 71, 288
BstSCI CCNGG 3 cut(s) 69, 136, 286
BstSFI CTRYAG 1 cut(s) 346
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 421
BstXI CCANNNNNNTGG 1 cut(s) 424
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 1 cut(s) 344
BtsIMutI CAGTG 2 cut(s) 228, 331
Cfr13I GGNCC 1 cut(s) 293
CsiI ACCWGGT 1 cut(s) 286
Csp6I GTAC 1 cut(s) 209
CviAII CATG 1 cut(s) 401
CviJI RGCY 9 cut(s) 86, 127, 136, 169, 215, 259, 344, 405, 428
CviKI_1 RGCY 9 cut(s) 86, 127, 136, 169, 215, 259, 344, 405, 428
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 2 cut(s) 132, 323
DpnI GATC 3 cut(s) 143, 389, 423
DpnII GATC 3 cut(s) 141, 387, 421
DraIII CACNNNGTG 1 cut(s) 290
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 69, 286
FaeI CATG 1 cut(s) 404
FaiI YATR 5 cut(s) 103, 244, 277, 402, 448
FatI CATG 1 cut(s) 400
Fnu4HI GCNGC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 128
FspBI CTAG 2 cut(s) 212, 312
GluI GCNGC 1 cut(s) 128
HaeIII GGCC 1 cut(s) 344
HapII CCGG 1 cut(s) 137
Hin1II CATG 1 cut(s) 404
HpaII CCGG 1 cut(s) 137
HphI GGTGA 3 cut(s) 142, 276, 300
Hpy166II GTNNAC 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 284
HpyCH4III ACNGT 2 cut(s) 148, 223
HpyCH4V TGCA 2 cut(s) 40, 107
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 197, 248
HpyF3I CTNAG 2 cut(s) 132, 323
Hsp92II CATG 1 cut(s) 404
Kzo9I GATC 3 cut(s) 141, 387, 421
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 1 cut(s) 62
MabI ACCWGGT 1 cut(s) 286
MaeI CTAG 2 cut(s) 212, 312
MaeIII GTNAC 2 cut(s) 148, 301
MalI GATC 3 cut(s) 143, 389, 423
MboI GATC 3 cut(s) 141, 387, 421
MboII GAAGA 2 cut(s) 50, 383
MflI RGATCY 1 cut(s) 421
MluCI AATT 2 cut(s) 63, 89
MnlI CCTC 7 cut(s) 72, 107, 141, 149, 270, 276, 306
MslI CAYNNNNRTG 1 cut(s) 100
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 3 cut(s) 71, 138, 288
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 2 cut(s) 71, 288
MwoI GCNNNNNNNGC 3 cut(s) 133, 197, 248
NciI CCSGG 1 cut(s) 138
NdeII GATC 3 cut(s) 141, 387, 421
NlaIII CATG 1 cut(s) 404
NmuCI GTSAC 2 cut(s) 148, 301
PctI GAATGC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 129
Psp6I CCWGG 2 cut(s) 69, 286
PspGI CCWGG 2 cut(s) 69, 286
PspPI GGNCC 1 cut(s) 293
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 100
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 3 cut(s) 141, 387, 421
Sau96I GGNCC 1 cut(s) 293
ScaI AGTACT 1 cut(s) 210
ScrFI CCNGG 3 cut(s) 71, 138, 288
SetI ASST 6 cut(s) 11, 129, 217, 289, 313, 436
SexAI ACCWGGT 1 cut(s) 286
SfaNI GCATC 1 cut(s) 62
SfcI CTRYAG 1 cut(s) 346
SinI GGWCC 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 100
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 2 cut(s) 63, 89
SsiI CCGC 1 cut(s) 279
SspMI CTAG 2 cut(s) 212, 312
StyD4I CCNGG 3 cut(s) 69, 136, 286
TaaI ACNGT 2 cut(s) 148, 223
TasI AATT 2 cut(s) 63, 89
TatI WGTACW 1 cut(s) 208
TscAI CASTG 2 cut(s) 228, 331
TseFI GTSAC 2 cut(s) 148, 301
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 2 cut(s) 148, 301
TspDTI ATGAA 1 cut(s) 389
TspRI CASTG 2 cut(s) 228, 331
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 63
XspI CTAG 2 cut(s) 212, 312
ZrmI AGTACT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.