Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001884

Physical Location & Seq

Genomic Coordinates Forward (+)

40277066 .. 40280479

Gene Structure 3414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG314100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGTTGTGTCACTAATGGTAGATCCTGTGGTATTAATTATTATTTTTCTTTTTCCAGCAATGATTGCCCCAGTAGTACTAGCTTTGACAGTGGGTTTTCTTGGGTGGGCATATCAGGCACTAAAGCCTCCCCCTCCCAAAATATGCGGTTCACCTGGTGGTCCTCCTGTCACTTCACCTAGAGTGAAACTCAGTGATGGTAGATATTTGGCCTACAGGGAGTTTGGAGTGCCTAAAGAAGAGGCAAAACACAAGATCATCATCATTCATGGCTTTAGCAGTTCCAAAGATCTGGCTTTACCTGTTTCTCAAGAACTCGTTGACGAGTTAAGGGTATATTTTCTCTTCTTTGACAGAGCTGGTTATGGCGAAAGTGATCCGTATCCCTCACGCTCGGTTAAGAGTGAAGCATATGATATTCAAGAACTAGCCGACACGTTGCAGATTGGGTCCAAATTCTATGTAATTGGAATCTCAATGGGGGCTTACCCTGTTTGGAGTTGCTTGAAATACATACCGCACAGATTGTTAGGAGCTTCCCTGGTAGTTCCTTTTGTGAACTACTGGTGGCCTCGTATTCCTGCTAATCTATTGAGAGAGTCCTTTCAGAGGCTGCAGGTATCAGACCAACGGACGTTCCAAGTTGCACATTACACCCCATGGTTGCTTCATTGGTGGATGACCCAGAAATGGTTCACTGCATTAAGTATGATGGCTGGAAATATGGAGATCTTCTGCCCCAAAGATTTAGAAACATTGAAGAAACTTTCCGAATCCCCAAGTGTTGGTCAGGAAAAGATACAGCAGCAAGGAGAACACGAATCTCTCTACCGAGACCTACTGGCTGGCTATGGAAAATGGGAATTCGACCCCATAGACTTAACGAATCCATTTCCTAACAATGAGGGTTCAGTTCACATTTGGCAAGGCTATGCAGACAGGATCATTCCATATAAAGTAAACCGTTACATTGCAGAGAAGCTTCCCTGGATTCATTATCACGAAGTTCCTGATTATGGGCATTTCCTTATTTTTGAGAGTGATCCATGTGAGGCTGTTTTGAAGGCACTCTTGCGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

360

Amino Acids

41.14

Weight (kDa)

6.37

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	81 - 347	1.1e-07	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	86 - 347	8.3e-11	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	86 - 355	1.1e-11	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22460 AT5G22460 AT5G22460
fragaria_vesca	FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_7g05600
malus_domestica	MD07G1064300.v1.1 MD07G1064500.v1.1 MD11G1163800.v1.1
prunus_persica	Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1
pyrus_communis	pycom03g09790
rosa_chinensis	RchiOBHm_Chr5g0044301 RchiOBHm_Chr5g0044321 RchiOBHm_Chr5g0044331
rosa_laevigata	RLG00000034264 RLG00000034265
rosa_multiflora	Rmu_co8240737.1_g000001 Rmu_co8478079.1_g000001 Rmu_sc0002307.1_g000004 Rmu_sc0004741.1_g000022 Rmu_sc0015666.1_g000005 Rmu_sc0016943.1_g000002 Rmu_sc0039604.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036650 Rroxscaffold_1G00036660 Rroxscaffold_4G00311410 Rroxscaffold_7G00192630
rosa_rugosa	Rorug05G0212900 Rorug05G0213000 Rorug05G0213100
rosa_samantha	Rh3CG234200 Rh5AG297600 Rh5BG304900 Rh5BG305000 Rh5CG331800 Rh5CG331900 Rh5DG314100 Rh5DG314200
rosa_wichuraiana	Rw5G027540 Rw5G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	607
AccB7I	CCANNNNNTGG	1 cut(s)	785
AciI	CCGC	2 cut(s)	147, 518
AclWI	GGATC	4 cut(s)	17, 371, 950, 1037
AcsI	RAATTY	2 cut(s)	455, 863
AdeI	CACNNNGTG	1 cut(s)	158
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	4 cut(s)	609, 690, 785, 1016
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	4 cut(s)	422, 508, 760, 1063
AjnI	CCWGG	3 cut(s)	154, 540, 986
AluBI	AGCT	4 cut(s)	83, 359, 536, 982
AluI	AGCT	4 cut(s)	83, 359, 536, 982
Alw26I	GTCTC	1 cut(s)	828
AlwI	GGATC	4 cut(s)	17, 371, 950, 1037
AlwNI	CAGNNNCTG	1 cut(s)	613
AoxI	GGCC	2 cut(s)	210, 569
ApeKI	GCWGC	2 cut(s)	613, 805
ApoI	RAATTY	2 cut(s)	455, 863
AseI	ATTAAT	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	692
AspS9I	GGNCC	2 cut(s)	161, 450
AsuHPI	GGTGA	2 cut(s)	144, 168
AvaII	GGWCC	2 cut(s)	161, 450
BbvI	GCAGC	2 cut(s)	600, 817
BccI	CCATC	2 cut(s)	191, 706
BciT130I	CCWGG	3 cut(s)	156, 542, 988
BciVI	GTATCC	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	828
BfaI	CTAG	3 cut(s)	80, 180, 428
BfmI	CTRYAG	2 cut(s)	214, 614
BfuAI	ACCTGC	1 cut(s)	607
BfuI	GTATCC	1 cut(s)	393
BglII	AGATCT	2 cut(s)	289, 729
BisI	GCNGC	2 cut(s)	614, 806
BlsI	GCNGC	2 cut(s)	615, 807
BmcAI	AGTACT	1 cut(s)	78
Bme1390I	CCNGG	3 cut(s)	156, 542, 988
Bme18I	GGWCC	2 cut(s)	161, 450
BmgT120I	GGNCC	2 cut(s)	161, 450
BmiI	GGNNCC	1 cut(s)	451
BmrFI	CCNGG	3 cut(s)	156, 542, 988
BmrI	ACTGGG	1 cut(s)	65
BmuI	ACTGGG	1 cut(s)	65
BplI	GAGNNNNNCTC	2 cut(s)	174, 206
BpuEI	CTTGAG	1 cut(s)	294
BsaBI	GATNNNNATC	2 cut(s)	260, 381
BsaI	GGTCTC	1 cut(s)	828
BsaJI	CCNNGG	3 cut(s)	540, 659, 986
Bsc4I	CCNNNNNNNGG	4 cut(s)	609, 690, 785, 1016
Bse1I	ACTGG	3 cut(s)	71, 569, 846
Bse3DI	GCAATG	2 cut(s)	66, 969
Bse8I	GATNNNNATC	2 cut(s)	260, 381
BseBI	CCWGG	3 cut(s)	156, 542, 988
BseDI	CCNNGG	3 cut(s)	540, 659, 986
BseGI	GGATG	1 cut(s)	684
BseJI	GATNNNNATC	2 cut(s)	260, 381
BseLI	CCNNNNNNNGG	4 cut(s)	609, 690, 785, 1016
BseMI	GCAATG	2 cut(s)	66, 969
BseMII	CTCAG	1 cut(s)	205
BseNI	ACTGG	3 cut(s)	71, 569, 846
BseXI	GCAGC	2 cut(s)	600, 817
BshFI	GGCC	2 cut(s)	212, 571
BslI	CCNNNNNNNGG	4 cut(s)	609, 690, 785, 1016
BsmAI	GTCTC	1 cut(s)	828
BsnI	GGCC	2 cut(s)	212, 571
Bso31I	GGTCTC	1 cut(s)	828
Bsp143I	GATC	7 cut(s)	22, 255, 289, 376, 729, 942, 1042
Bsp19I	CCATGG	1 cut(s)	659
BspACI	CCGC	2 cut(s)	147, 518
BspANI	GGCC	2 cut(s)	212, 571
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	451
BspMAI	CTGCAG	1 cut(s)	618
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	4 cut(s)	17, 371, 950, 1037
BspTNI	GGTCTC	1 cut(s)	828
BsrDI	GCAATG	2 cut(s)	66, 969
BsrI	ACTGG	3 cut(s)	71, 569, 846
BssECI	CCNNGG	3 cut(s)	540, 659, 986
BssMI	GATC	7 cut(s)	22, 255, 289, 376, 729, 942, 1042
BssT1I	CCWWGG	1 cut(s)	659
Bst2UI	CCWGG	3 cut(s)	156, 542, 988
Bst4CI	ACNGT	2 cut(s)	91, 965
Bst6I	CTCTTC	2 cut(s)	234, 350
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	847
BstDEI	CTNAG	1 cut(s)	191
BstDSI	CCRYGG	1 cut(s)	659
BstENI	CCTNNNNNAGG	1 cut(s)	607
BstF5I	GGATG	1 cut(s)	684
BstKTI	GATC	7 cut(s)	25, 258, 292, 379, 732, 945, 1045
BstMAI	GTCTC	1 cut(s)	828
BstMBI	GATC	7 cut(s)	22, 255, 289, 376, 729, 942, 1042
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 116
BstNI	CCWGG	3 cut(s)	156, 542, 988
BstSCI	CCNGG	3 cut(s)	154, 540, 986
BstSFI	CTRYAG	2 cut(s)	214, 614
BstV1I	GCAGC	2 cut(s)	600, 817
BstX2I	RGATCY	3 cut(s)	22, 289, 729
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	3 cut(s)	22, 289, 729
BsuI	GTATCC	1 cut(s)	393
BsuRI	GGCC	2 cut(s)	212, 571
BtgI	CCRYGG	1 cut(s)	659
BtsCI	GGATG	1 cut(s)	684
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	3 cut(s)	96, 199, 696
BveI	ACCTGC	1 cut(s)	607
Cac8I	GCNNGC	1 cut(s)	847
CaiI	CAGNNNCTG	1 cut(s)	613
Cfr13I	GGNCC	2 cut(s)	161, 450
CsiI	ACCWGGT	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	3 cut(s)	269, 660, 1047
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	7 cut(s)	24, 257, 291, 378, 731, 944, 1044
DpnII	GATC	7 cut(s)	22, 255, 289, 376, 729, 942, 1042
DraIII	CACNNNGTG	1 cut(s)	158
Eam1104I	CTCTTC	2 cut(s)	234, 350
EarI	CTCTTC	2 cut(s)	234, 350
Eco130I	CCWWGG	1 cut(s)	659
Eco31I	GGTCTC	1 cut(s)	828
Eco47I	GGWCC	2 cut(s)	161, 450
EcoNI	CCTNNNNNAGG	1 cut(s)	607
EcoRI	GAATTC	1 cut(s)	863
EcoRII	CCWGG	3 cut(s)	154, 540, 986
EcoT14I	CCWWGG	1 cut(s)	659
ErhI	CCWWGG	1 cut(s)	659
FaeI	CATG	3 cut(s)	272, 663, 1050
FalI	AAGNNNNNCTT	1 cut(s)	1055
FatI	CATG	3 cut(s)	268, 659, 1046
FauNDI	CATATG	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	614, 806
FokI	GGATG	1 cut(s)	691
Fsp4HI	GCNGC	2 cut(s)	614, 806
FspBI	CTAG	3 cut(s)	80, 180, 428
GluI	GCNGC	2 cut(s)	614, 806
HaeIII	GGCC	2 cut(s)	212, 571
Hin1II	CATG	3 cut(s)	272, 663, 1050
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	980
HinfI	GANTC	6 cut(s)	471, 599, 773, 821, 886, 991
HphI	GGTGA	2 cut(s)	144, 168
Hpy166II	GTNNAC	6 cut(s)	152, 322, 559, 696, 916, 961
Hpy188I	TCNGA	3 cut(s)	609, 625, 772
Hpy188III	TCNNGA	5 cut(s)	311, 422, 791, 1001, 1010
Hpy8I	GTNNAC	6 cut(s)	152, 322, 559, 696, 916, 961
HpyAV	CCTTC	1 cut(s)	1057
HpyCH4III	ACNGT	2 cut(s)	91, 965
HpyCH4IV	ACGT	2 cut(s)	437, 635
HpyCH4V	TGCA	6 cut(s)	442, 616, 647, 701, 935, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 116
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	2 cut(s)	437, 635
Hsp92II	CATG	3 cut(s)	272, 663, 1050
Kzo9I	GATC	7 cut(s)	22, 255, 289, 376, 729, 942, 1042
LmnI	GCTCC	1 cut(s)	533
Lsp1109I	GCAGC	2 cut(s)	600, 817
MabI	ACCWGGT	1 cut(s)	154
MaeI	CTAG	3 cut(s)	80, 180, 428
MaeII	ACGT	2 cut(s)	437, 635
MaeIII	GTNAC	3 cut(s)	9, 169, 965
MalI	GATC	7 cut(s)	24, 257, 291, 378, 731, 944, 1044
MboI	GATC	7 cut(s)	22, 255, 289, 376, 729, 942, 1042
MboII	GAAGA	4 cut(s)	251, 337, 724, 772
MflI	RGATCY	3 cut(s)	22, 289, 729
MluCI	AATT	4 cut(s)	36, 455, 465, 863
MlyI	GAGTC	1 cut(s)	608
MnlI	CCTC	9 cut(s)	138, 144, 174, 235, 397, 582, 603, 898, 1045
MroXI	GAANNNNTTC	1 cut(s)	692
MseI	TTAA	5 cut(s)	35, 329, 399, 704, 881
MspR9I	CCNGG	3 cut(s)	156, 542, 988
MvaI	CCWGG	3 cut(s)	156, 542, 988
MwoI	GCNNNNNNNGC	2 cut(s)	65, 116
NcoI	CCATGG	1 cut(s)	659
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	7 cut(s)	22, 255, 289, 376, 729, 942, 1042
NlaIII	CATG	3 cut(s)	272, 663, 1050
NlaIV	GGNNCC	1 cut(s)	451
NmuCI	GTSAC	2 cut(s)	9, 169
PdmI	GAANNNNTTC	1 cut(s)	692
PfeI	GAWTC	5 cut(s)	471, 773, 821, 886, 991
PflMI	CCANNNNNTGG	1 cut(s)	785
PkrI	GCNGC	2 cut(s)	615, 807
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
PshBI	ATTAAT	1 cut(s)	35
Psp6I	CCWGG	3 cut(s)	154, 540, 986
PspGI	CCWGG	3 cut(s)	154, 540, 986
PspN4I	GGNNCC	1 cut(s)	451
PspPI	GGNCC	2 cut(s)	161, 450
PstI	CTGCAG	1 cut(s)	618
PstNI	CAGNNNCTG	1 cut(s)	613
PsuI	RGATCY	3 cut(s)	22, 289, 729
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SaqAI	TTAA	5 cut(s)	35, 329, 399, 704, 881
SatI	GCNGC	2 cut(s)	614, 806
Sau3AI	GATC	7 cut(s)	22, 255, 289, 376, 729, 942, 1042
Sau96I	GGNCC	2 cut(s)	161, 450
ScaI	AGTACT	1 cut(s)	78
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	3 cut(s)	156, 542, 988
SexAI	ACCWGGT	1 cut(s)	154
SfcI	CTRYAG	2 cut(s)	214, 614
SinI	GGWCC	2 cut(s)	161, 450
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	4 cut(s)	36, 455, 465, 863
SsiI	CCGC	2 cut(s)	147, 518
SspMI	CTAG	3 cut(s)	80, 180, 428
StyD4I	CCNGG	3 cut(s)	154, 540, 986
StyI	CCWWGG	1 cut(s)	659
TaaI	ACNGT	2 cut(s)	91, 965
TaiI	ACGT	2 cut(s)	440, 638
TaqI	TCGA	1 cut(s)	867
TasI	AATT	4 cut(s)	36, 455, 465, 863
TatI	WGTACW	1 cut(s)	76
TfiI	GAWTC	5 cut(s)	471, 773, 821, 886, 991
Tru1I	TTAA	5 cut(s)	35, 329, 399, 704, 881
Tru9I	TTAA	5 cut(s)	35, 329, 399, 704, 881
TscAI	CASTG	3 cut(s)	96, 199, 703
TseFI	GTSAC	2 cut(s)	9, 169
TseI	GCWGC	2 cut(s)	613, 805
Tsp45I	GTSAC	2 cut(s)	9, 169
TspDTI	ATGAA	3 cut(s)	257, 659, 983
TspGWI	ACGGA	2 cut(s)	369, 646
TspRI	CASTG	3 cut(s)	96, 199, 703
Van91I	CCANNNNNTGG	1 cut(s)	785
VpaK11BI	GGWCC	2 cut(s)	161, 450
VspI	ATTAAT	1 cut(s)	35
XagI	CCTNNNNNAGG	1 cut(s)	607
XapI	RAATTY	2 cut(s)	455, 863
XmnI	GAANNNNTTC	1 cut(s)	692
XspI	CTAG	3 cut(s)	80, 180, 428
ZrmI	AGTACT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.