Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039604.1

Orthogroup ID

OG0001884

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1208

Gene Structure 1208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039604.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 559 bp

attgttaggagcttccctggtagttccttttgtgaactactggtggcctcgaattcctgctaatctattgagagagtcctttcagaggctgcaggtatcagaccaacggacgttccaagttgcacattacaccccatggttgcttcattggtggatgacccagaaatggttcactgcattaagtatgatggctggaaatatggagatcttctgccccaaagatttagaaacattgaagaaactttccgaatccccaagtgttggtcaggaaaagatacagcagcaaggagaacacgaatctctctaccgagacctactggctggctatggaaaatgggaattcgaccccatagacttaacgaatccatttcctaacaatgagggttcagttcacatttggcaaggctatgcagacaggatcattccatataaagtaaaccgttacattgcagagaagcttccctggattcattatcacgaagttcctgattatgggcatttccttatttttgagagtgatccatgtgaggctgttttgaaggcactcttgcgtggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

185

Amino Acids

21.78

Weight (kDa)

5.97

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22460 AT5G22460 AT5G22460
fragaria_vesca	FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_3g24730 FvH4_7g05600
malus_domestica	MD07G1064300.v1.1 MD07G1064500.v1.1 MD11G1163800.v1.1
prunus_persica	Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1 Prupe.6G128500_v2.0.a1
pyrus_communis	pycom03g09790
rosa_chinensis	RchiOBHm_Chr5g0044301 RchiOBHm_Chr5g0044321 RchiOBHm_Chr5g0044331
rosa_laevigata	RLG00000034264 RLG00000034265
rosa_multiflora	Rmu_co8240737.1_g000001 Rmu_co8478079.1_g000001 Rmu_sc0002307.1_g000004 Rmu_sc0004741.1_g000022 Rmu_sc0015666.1_g000005 Rmu_sc0016943.1_g000002 Rmu_sc0039604.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036650 Rroxscaffold_1G00036660 Rroxscaffold_4G00311410 Rroxscaffold_7G00192630
rosa_rugosa	Rorug05G0212900 Rorug05G0213000 Rorug05G0213100
rosa_samantha	Rh3CG234200 Rh5AG297600 Rh5BG304900 Rh5BG305000 Rh5CG331800 Rh5CG331900 Rh5DG314100 Rh5DG314200
rosa_wichuraiana	Rw5G027540 Rw5G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	261
AclWI	GGATC	2 cut(s)	426, 513
AcsI	RAATTY	2 cut(s)	52, 339
AfiI	CCNNNNNNNGG	4 cut(s)	85, 166, 261, 492
AgsI	TTSAA	2 cut(s)	236, 539
AjnI	CCWGG	2 cut(s)	16, 462
AluBI	AGCT	2 cut(s)	12, 458
AluI	AGCT	2 cut(s)	12, 458
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	2 cut(s)	426, 513
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	89, 281
ApoI	RAATTY	2 cut(s)	52, 339
Asp700I	GAANNNNTTC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	76, 293
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	2 cut(s)	18, 464
BcoDI	GTCTC	1 cut(s)	304
BfmI	CTRYAG	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	83
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	2 cut(s)	90, 282
BlsI	GCNGC	2 cut(s)	91, 283
Bme1390I	CCNGG	2 cut(s)	18, 464
BmrFI	CCNGG	2 cut(s)	18, 464
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	3 cut(s)	16, 135, 462
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 166, 261, 492
Bse1I	ACTGG	2 cut(s)	45, 322
Bse3DI	GCAATG	1 cut(s)	445
BseBI	CCWGG	2 cut(s)	18, 464
BseDI	CCNNGG	3 cut(s)	16, 135, 462
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	4 cut(s)	85, 166, 261, 492
BseMI	GCAATG	1 cut(s)	445
BseNI	ACTGG	2 cut(s)	45, 322
BseXI	GCAGC	2 cut(s)	76, 293
BshFI	GGCC	1 cut(s)	47
BslI	CCNNNNNNNGG	4 cut(s)	85, 166, 261, 492
BsmAI	GTCTC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	205, 418, 518
Bsp19I	CCATGG	1 cut(s)	135
BspANI	GGCC	1 cut(s)	47
BspMAI	CTGCAG	1 cut(s)	94
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	426, 513
BspTNI	GGTCTC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	445
BsrI	ACTGG	2 cut(s)	45, 322
BssECI	CCNNGG	3 cut(s)	16, 135, 462
BssMI	GATC	3 cut(s)	205, 418, 518
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	18, 464
Bst4CI	ACNGT	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	323
BstDSI	CCRYGG	1 cut(s)	135
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	3 cut(s)	208, 421, 521
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	3 cut(s)	205, 418, 518
BstNI	CCWGG	2 cut(s)	18, 464
BstSCI	CCNGG	2 cut(s)	16, 462
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	76, 293
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	160
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	172
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	323
CaiI	CAGNNNCTG	1 cut(s)	89
CviAII	CATG	2 cut(s)	136, 523
CviJI	RGCY	9 cut(s)	12, 47, 89, 192, 321, 325, 406, 458, 531
CviKI_1	RGCY	9 cut(s)	12, 47, 89, 192, 321, 325, 406, 458, 531
DpnI	GATC	3 cut(s)	207, 420, 520
DpnII	GATC	3 cut(s)	205, 418, 518
Eco130I	CCWWGG	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	304
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoRI	GAATTC	2 cut(s)	52, 339
EcoRII	CCWGG	2 cut(s)	16, 462
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	139, 526
FalI	AAGNNNNNCTT	1 cut(s)	531
FatI	CATG	2 cut(s)	135, 522
Fnu4HI	GCNGC	2 cut(s)	90, 282
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	90, 282
GluI	GCNGC	2 cut(s)	90, 282
HaeIII	GGCC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	139, 526
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	5 cut(s)	75, 249, 297, 362, 467
Hpy166II	GTNNAC	4 cut(s)	35, 172, 392, 437
Hpy188I	TCNGA	3 cut(s)	85, 101, 248
Hpy188III	TCNNGA	3 cut(s)	267, 477, 486
Hpy8I	GTNNAC	4 cut(s)	35, 172, 392, 437
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	1 cut(s)	441
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	5 cut(s)	92, 123, 177, 411, 450
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	139, 526
Kzo9I	GATC	3 cut(s)	205, 418, 518
LmnI	GCTCC	1 cut(s)	9
Lsp1109I	GCAGC	2 cut(s)	76, 293
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	3 cut(s)	207, 420, 520
MboI	GATC	3 cut(s)	205, 418, 518
MboII	GAAGA	2 cut(s)	200, 248
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	2 cut(s)	52, 339
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	4 cut(s)	58, 79, 374, 521
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	2 cut(s)	180, 357
MspR9I	CCNGG	2 cut(s)	18, 464
MvaI	CCWGG	2 cut(s)	18, 464
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	3 cut(s)	205, 418, 518
NlaIII	CATG	2 cut(s)	139, 526
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	4 cut(s)	249, 297, 362, 467
PflMI	CCANNNNNTGG	1 cut(s)	261
PkrI	GCNGC	2 cut(s)	91, 283
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	16, 462
PspGI	CCWGG	2 cut(s)	16, 462
PstI	CTGCAG	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	180, 357
SatI	GCNGC	2 cut(s)	90, 282
Sau3AI	GATC	3 cut(s)	205, 418, 518
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	2 cut(s)	18, 464
SetI	ASST	5 cut(s)	14, 97, 114, 316, 460
SfcI	CTRYAG	1 cut(s)	90
Sse9I	AATT	2 cut(s)	52, 339
StyD4I	CCNGG	2 cut(s)	16, 462
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	441
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	50, 343
TasI	AATT	2 cut(s)	52, 339
TfiI	GAWTC	4 cut(s)	249, 297, 362, 467
Tru1I	TTAA	2 cut(s)	180, 357
Tru9I	TTAA	2 cut(s)	180, 357
TscAI	CASTG	1 cut(s)	179
TseI	GCWGC	2 cut(s)	89, 281
TspDTI	ATGAA	2 cut(s)	135, 459
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	261
XagI	CCTNNNNNAGG	1 cut(s)	83
XapI	RAATTY	2 cut(s)	52, 339
XmnI	GAANNNNTTC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.