RLG00000034265
ERF Family

BEST Arabidopsis thaliana protein match is alpha beta-Hydrolases superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001884
Physical Location & Seq
Forward (+)
39621361 .. 39623257
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034265

Sequence Viewer

Length: 1023 bp
ATGATTGCACCAGTAGTACTAGCTTTGACAGTGGGTTTTCTTGGGTGGGCTTATCAGGCACTTAAGCCTCCCCCTCCCAAAATATGCGGTTCACCTGATGGTCCTCCTGTCACTTCACCTAGAGTGAAACTCAGTGATGGTAGATATTTGGCCTACAGGGAGTTTGGAGTGCCTAAAGAAGAGGCAAAACACAAGATCATCATCATTCATGGCTTTAACAGTTCCAAAGATTGGGCTTTACCTATTGCTCAAGAACTCATTGACGAGTTAAGGGTATATTTCCTCTTCTTTGACAGAGCTGGTTATGGCGAAAGTTATCCGTATCCATCACGCTCAGTGAAGAGTGAAGCATACGATATTCAAGAACTAGCTGACATGTTGCAGATTGGATCCAAATTCTATGTAATTGGAGTCTCAATGGGGGCTTACTCTGTTTGGAGTTGCTTGAAATACATACCGCACAGATTGTTAGGAGCTTCCCTGGTAGTTCCTTTTGTGAACTACTGGTGGCCTCGTATTCCTGCTAATCTATTGAGAGAGTCCTTTCAGAGGCGGCAGGTATCGGACCAACGGACATTCCAAGTTGCACATTACACCCCATGGTTACTTCATTGGTGGATGACCCAGAAATGGTTCACTACATTAAGTATCGTGGCTGGAAATATGGAGATCTTCTGCCCCAAAGATTTAGAAACATTGAAGAAACTTTCAGAATCCCCAAGTGTTGGAAGGGAAAAGATACGGCAGCAAGGAGATCACGAATCTCTCTACCGAGACCTACTGGTTGGCTATGGAAAATGGGAATTCGACCCCATAGACTTAAAGAATCCATTTCCTAACAATGAGGGTTCAGTTCACGTTTGGCAAGGCTATGCAGACAGGATCATTCCATATAAAGTAAACCGTTACATTGCAGAGAAGCTTCCCTGGATTCATTATCACGAAGTTCCTGATTATGGGCATTTTCTTATTTTTGAGAGTTATCTATGTGAGGCTGTTTTGAAGGCACTCTTGCTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

341

Amino Acids

39.29

Weight (kDa)

8.18

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 61 - 190 1.3e-07 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 66 - 327 5.5e-09 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 66 - 326 4.5e-10 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 547
AccB7I CCANNNNNTGG 2 cut(s) 231, 725
AciI CCGC 3 cut(s) 87, 458, 553
AclWI GGATC 3 cut(s) 384, 397, 890
AcsI RAATTY 2 cut(s) 395, 803
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 5 cut(s) 231, 549, 630, 725, 956
AflII CTTAAG 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 4 cut(s) 362, 448, 700, 1003
AjnI CCWGG 2 cut(s) 480, 926
AluBI AGCT 5 cut(s) 23, 299, 371, 476, 922
AluI AGCT 5 cut(s) 23, 299, 371, 476, 922
Alw26I GTCTC 2 cut(s) 418, 768
AlwI GGATC 3 cut(s) 384, 397, 890
AoxI GGCC 2 cut(s) 150, 509
ApeKI GCWGC 1 cut(s) 745
ApoI RAATTY 2 cut(s) 395, 803
Asp700I GAANNNNTTC 1 cut(s) 632
AspS9I GGNCC 2 cut(s) 101, 565
AsuHPI GGTGA 2 cut(s) 84, 108
AvaII GGWCC 2 cut(s) 101, 565
BamHI GGATCC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 757
BccI CCATC 3 cut(s) 92, 131, 334
BceAI ACGGC 1 cut(s) 758
BciT130I CCWGG 2 cut(s) 482, 928
BciVI GTATCC 1 cut(s) 333
BcoDI GTCTC 2 cut(s) 418, 768
BfaI CTAG 3 cut(s) 20, 120, 368
BfmI CTRYAG 1 cut(s) 154
BfrI CTTAAG 1 cut(s) 62
BfuAI ACCTGC 1 cut(s) 547
BfuI GTATCC 1 cut(s) 333
BglII AGATCT 1 cut(s) 669
BisI GCNGC 2 cut(s) 554, 746
BlsI GCNGC 2 cut(s) 555, 747
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 2 cut(s) 482, 928
Bme18I GGWCC 2 cut(s) 101, 565
BmgT120I GGNCC 2 cut(s) 101, 565
BmiI GGNNCC 1 cut(s) 391
BmrFI CCNGG 2 cut(s) 482, 928
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BpuEI CTTGAG 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 768
BsaJI CCNNGG 3 cut(s) 480, 599, 926
Bsc4I CCNNNNNNNGG 5 cut(s) 231, 549, 630, 725, 956
Bse1I ACTGG 3 cut(s) 11, 509, 786
Bse3DI GCAATG 1 cut(s) 909
Bse8I GATNNNNATC 1 cut(s) 200
BseBI CCWGG 2 cut(s) 482, 928
BseDI CCNNGG 3 cut(s) 480, 599, 926
BseGI GGATG 1 cut(s) 624
BseJI GATNNNNATC 1 cut(s) 200
BseLI CCNNNNNNNGG 5 cut(s) 231, 549, 630, 725, 956
BseMI GCAATG 1 cut(s) 909
BseMII CTCAG 2 cut(s) 145, 348
BseNI ACTGG 3 cut(s) 11, 509, 786
BseXI GCAGC 1 cut(s) 757
BshFI GGCC 2 cut(s) 152, 511
BslI CCNNNNNNNGG 5 cut(s) 231, 549, 630, 725, 956
BsmAI GTCTC 2 cut(s) 418, 768
BsnI GGCC 2 cut(s) 152, 511
Bso31I GGTCTC 1 cut(s) 768
Bsp143I GATC 5 cut(s) 195, 389, 669, 754, 882
Bsp19I CCATGG 1 cut(s) 599
BspACI CCGC 3 cut(s) 87, 458, 553
BspANI GGCC 2 cut(s) 152, 511
BspCNI CTCAG 2 cut(s) 144, 347
BspLI GGNNCC 1 cut(s) 391
BspMI ACCTGC 1 cut(s) 547
BspPI GGATC 3 cut(s) 384, 397, 890
BspTI CTTAAG 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 768
BsrDI GCAATG 1 cut(s) 909
BsrI ACTGG 3 cut(s) 11, 509, 786
BssECI CCNNGG 3 cut(s) 480, 599, 926
BssMI GATC 5 cut(s) 195, 389, 669, 754, 882
BssT1I CCWWGG 1 cut(s) 599
Bst2UI CCWGG 2 cut(s) 482, 928
Bst4CI ACNGT 3 cut(s) 31, 221, 905
Bst6I CTCTTC 3 cut(s) 174, 290, 335
BstAFI CTTAAG 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 131, 334
BstDSI CCRYGG 1 cut(s) 599
BstENI CCTNNNNNAGG 1 cut(s) 547
BstF5I GGATG 1 cut(s) 624
BstKTI GATC 5 cut(s) 198, 392, 672, 757, 885
BstMAI GTCTC 2 cut(s) 418, 768
BstMBI GATC 5 cut(s) 195, 389, 669, 754, 882
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 2 cut(s) 482, 928
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 480, 926
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 757
BstX2I RGATCY 2 cut(s) 389, 669
BstYI RGATCY 2 cut(s) 389, 669
BsuI GTATCC 1 cut(s) 333
BsuRI GGCC 2 cut(s) 152, 511
BtgI CCRYGG 1 cut(s) 599
BtsCI GGATG 1 cut(s) 624
BtsIMutI CAGTG 3 cut(s) 36, 139, 342
BveI ACCTGC 1 cut(s) 547
Cfr13I GGNCC 2 cut(s) 101, 565
Csp6I GTAC 1 cut(s) 17
CviAII CATG 3 cut(s) 209, 376, 600
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 2 cut(s) 131, 334
DpnI GATC 5 cut(s) 197, 391, 671, 756, 884
DpnII GATC 5 cut(s) 195, 389, 669, 754, 882
Eam1104I CTCTTC 3 cut(s) 174, 290, 335
EarI CTCTTC 3 cut(s) 174, 290, 335
Eco130I CCWWGG 1 cut(s) 599
Eco31I GGTCTC 1 cut(s) 768
Eco47I GGWCC 2 cut(s) 101, 565
EcoNI CCTNNNNNAGG 1 cut(s) 547
EcoRI GAATTC 1 cut(s) 803
EcoRII CCWGG 2 cut(s) 480, 926
EcoT14I CCWWGG 1 cut(s) 599
ErhI CCWWGG 1 cut(s) 599
FaeI CATG 3 cut(s) 212, 379, 603
FalI AAGNNNNNCTT 1 cut(s) 995
FatI CATG 3 cut(s) 208, 375, 599
Fnu4HI GCNGC 2 cut(s) 554, 746
FokI GGATG 1 cut(s) 631
Fsp4HI GCNGC 2 cut(s) 554, 746
FspBI CTAG 3 cut(s) 20, 120, 368
GluI GCNGC 2 cut(s) 554, 746
HaeIII GGCC 2 cut(s) 152, 511
Hin1II CATG 3 cut(s) 212, 379, 603
HindIII AAGCTT 1 cut(s) 920
HinfI GANTC 6 cut(s) 411, 539, 713, 761, 826, 931
HphI GGTGA 2 cut(s) 84, 108
Hpy166II GTNNAC 5 cut(s) 92, 499, 636, 856, 901
Hpy188I TCNGA 3 cut(s) 549, 565, 712
Hpy188III TCNNGA 5 cut(s) 251, 362, 758, 941, 950
Hpy8I GTNNAC 5 cut(s) 92, 499, 636, 856, 901
HpyAV CCTTC 2 cut(s) 723, 997
HpyCH4III ACNGT 3 cut(s) 31, 221, 905
HpyCH4IV ACGT 1 cut(s) 858
HpyCH4V TGCA 5 cut(s) 8, 382, 587, 875, 914
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 131, 334
HpySE526I ACGT 1 cut(s) 858
Hsp92II CATG 3 cut(s) 212, 379, 603
Kzo9I GATC 5 cut(s) 195, 389, 669, 754, 882
LmnI GCTCC 1 cut(s) 473
Lsp1109I GCAGC 1 cut(s) 757
MaeI CTAG 3 cut(s) 20, 120, 368
MaeII ACGT 1 cut(s) 858
MaeIII GTNAC 3 cut(s) 109, 603, 905
MalI GATC 5 cut(s) 197, 391, 671, 756, 884
MboI GATC 5 cut(s) 195, 389, 669, 754, 882
MboII GAAGA 5 cut(s) 191, 277, 352, 664, 712
MflI RGATCY 2 cut(s) 389, 669
MluCI AATT 3 cut(s) 395, 405, 803
MlyI GAGTC 2 cut(s) 420, 548
MmeI TCCRAC 1 cut(s) 706
MnlI CCTC 9 cut(s) 78, 84, 114, 175, 293, 522, 543, 838, 985
MroXI GAANNNNTTC 1 cut(s) 632
MseI TTAA 5 cut(s) 63, 216, 269, 644, 821
MspCI CTTAAG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 482, 928
MvaI CCWGG 2 cut(s) 482, 928
MwoI GCNNNNNNNGC 1 cut(s) 56
NcoI CCATGG 1 cut(s) 599
NdeII GATC 5 cut(s) 195, 389, 669, 754, 882
NlaIII CATG 3 cut(s) 212, 379, 603
NlaIV GGNNCC 1 cut(s) 391
NmuCI GTSAC 1 cut(s) 109
NspI RCATGY 1 cut(s) 379
PciI ACATGT 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 632
PfeI GAWTC 4 cut(s) 713, 761, 826, 931
PflMI CCANNNNNTGG 2 cut(s) 231, 725
PkrI GCNGC 2 cut(s) 555, 747
PleI GAGTC 2 cut(s) 419, 547
PpsI GAGTC 2 cut(s) 419, 547
PscI ACATGT 1 cut(s) 375
Psp6I CCWGG 2 cut(s) 480, 926
PspGI CCWGG 2 cut(s) 480, 926
PspN4I GGNNCC 1 cut(s) 391
PspPI GGNCC 2 cut(s) 101, 565
PsuI RGATCY 2 cut(s) 389, 669
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 5 cut(s) 63, 216, 269, 644, 821
SatI GCNGC 2 cut(s) 554, 746
Sau3AI GATC 5 cut(s) 195, 389, 669, 754, 882
Sau96I GGNCC 2 cut(s) 101, 565
ScaI AGTACT 1 cut(s) 18
SchI GAGTC 2 cut(s) 420, 548
ScrFI CCNGG 2 cut(s) 482, 928
SfcI CTRYAG 1 cut(s) 154
SinI GGWCC 2 cut(s) 101, 565
SmlI CTYRAG 2 cut(s) 62, 249
SmoI CTYRAG 2 cut(s) 62, 249
Sse9I AATT 3 cut(s) 395, 405, 803
SsiI CCGC 3 cut(s) 87, 458, 553
SspMI CTAG 3 cut(s) 20, 120, 368
StyD4I CCNGG 2 cut(s) 480, 926
StyI CCWWGG 1 cut(s) 599
TaaI ACNGT 3 cut(s) 31, 221, 905
TaiI ACGT 1 cut(s) 861
TaqI TCGA 1 cut(s) 807
TasI AATT 3 cut(s) 395, 405, 803
TatI WGTACW 1 cut(s) 16
TauI GCSGC 1 cut(s) 556
TfiI GAWTC 4 cut(s) 713, 761, 826, 931
Tru1I TTAA 5 cut(s) 63, 216, 269, 644, 821
Tru9I TTAA 5 cut(s) 63, 216, 269, 644, 821
TscAI CASTG 3 cut(s) 36, 139, 342
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 745
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 3 cut(s) 197, 599, 923
TspGWI ACGGA 2 cut(s) 309, 586
TspRI CASTG 3 cut(s) 36, 139, 342
Van91I CCANNNNNTGG 2 cut(s) 231, 725
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 2 cut(s) 101, 565
XagI CCTNNNNNAGG 1 cut(s) 547
XapI RAATTY 2 cut(s) 395, 803
XceI RCATGY 1 cut(s) 379
XmnI GAANNNNTTC 1 cut(s) 632
XspI CTAG 3 cut(s) 20, 120, 368
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.