Rroxscaffold_1G00036650
ERF Family

BEST Arabidopsis thaliana protein match is alpha beta-Hydrolases superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001884
Physical Location & Seq
Reverse (-)
53480045 .. 53480640
596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036650.1

Sequence Viewer

Length: 405 bp
ATGACCCAGAAATGGTTCACTACATTAAGTATCATGGCTGGAAATATGGGGATCTTCTGCCCCAAAGATTTGGAAACATTGAAGAAACTTTCCAAATCCCCAAGTGTTGGAAAGGAAAAGATACGGCAGCAAGGAGATCACGAATCTCCCTACCGAGACCTACTGGCTGGCTATGGAAAATGGGAATTCGACCCCATAGACTTAAAGAATCCATTTCCTAACAATGAGGGTTCAGTTCACATTTGGCAAGGCTATGCAGACAGGATCATTCCATATAAAGTAAACCGTTACATTGCAGAGAAGCTTCCCTGGATTCATTATCACGAAGTTTCTGATTATGGGCTTTTTCTTATTTTTGAGAGTGATCTATGTGAGGCTGTTTTGAAGGCACTCTTGCGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

134

Amino Acids

15.51

Weight (kDa)

6.9

Isoelectric Point (pI)

27.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 107
AclWI GGATC 2 cut(s) 59, 272
AcsI RAATTY 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 12, 107
AgsI TTSAA 2 cut(s) 82, 385
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 2 cut(s) 59, 272
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 150
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 310
BmrFI CCNGG 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 107
Bse1I ACTGG 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 308
BseLI CCNNNNNNNGG 2 cut(s) 12, 107
BseMI GCAATG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 12, 107
BsmAI GTCTC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 150
Bsp143I GATC 4 cut(s) 51, 136, 264, 364
BspPI GGATC 2 cut(s) 59, 272
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 4 cut(s) 51, 136, 264, 364
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 169
BstKTI GATC 4 cut(s) 54, 139, 267, 367
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 4 cut(s) 51, 136, 264, 364
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 70
BstYI RGATCY 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 169
CviAII CATG 1 cut(s) 34
CviJI RGCY 7 cut(s) 38, 167, 171, 252, 304, 343, 377
CviKI_1 RGCY 7 cut(s) 38, 167, 171, 252, 304, 343, 377
DpnI GATC 4 cut(s) 53, 138, 266, 366
DpnII GATC 4 cut(s) 51, 136, 264, 364
Eco31I GGTCTC 1 cut(s) 150
EcoRI GAATTC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 308
FaeI CATG 1 cut(s) 37
FaiI YATR 9 cut(s) 35, 47, 174, 197, 255, 274, 276, 339, 370
FalI AAGNNNNNCTT 1 cut(s) 377
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 128
Hin1II CATG 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 3 cut(s) 143, 208, 313
Hpy166II GTNNAC 3 cut(s) 18, 238, 283
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 2 cut(s) 140, 323
Hpy8I GTNNAC 3 cut(s) 18, 238, 283
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4V TGCA 2 cut(s) 257, 296
Hsp92II CATG 1 cut(s) 37
Kzo9I GATC 4 cut(s) 51, 136, 264, 364
LpnPI CCDG 7 cut(s) 20, 24, 149, 153, 247, 295, 322
Lsp1109I GCAGC 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 287
MalI GATC 4 cut(s) 53, 138, 266, 366
MboI GATC 4 cut(s) 51, 136, 264, 364
MboII GAAGA 2 cut(s) 46, 94
MflI RGATCY 1 cut(s) 51
MluCI AATT 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 2 cut(s) 220, 367
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 2 cut(s) 26, 203
MspR9I CCNGG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 310
NdeII GATC 4 cut(s) 51, 136, 264, 364
NlaIII CATG 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 3 cut(s) 143, 208, 313
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PsuI RGATCY 1 cut(s) 51
SaqAI TTAA 2 cut(s) 26, 203
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 4 cut(s) 51, 136, 264, 364
ScrFI CCNGG 1 cut(s) 310
SetI ASST 2 cut(s) 162, 306
Sse9I AATT 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 287
TaqI TCGA 1 cut(s) 189
TasI AATT 1 cut(s) 185
TfiI GAWTC 3 cut(s) 143, 208, 313
Tru1I TTAA 2 cut(s) 26, 203
Tru9I TTAA 2 cut(s) 26, 203
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 305
Van91I CCANNNNNTGG 1 cut(s) 107
XapI RAATTY 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.