AT5G27830

Folate receptor family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001032
Physical Location & Seq
Forward (+)
9861176 .. 9862938
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G27830.3

Sequence Viewer

Length: 903 bp
ATGGGAAGATGTTTAACGAAGAAGGTGTTTTTGATTCAGAGTCCGATCTTGTTTCTTCATCTCCTGATCTCTTTATCGTCCGGTGCAGTGAAACCGGATTTGAAAGGAGTATGTGTTTCTAAAGGAGGGAGGTTTCCGCCATATGAGTTGGAAGGGAAGCCTCCTAAGTCTGTTGGTAGGGGATCCAAGGATCTTACTCTGTGCCGGGTGTTTCGTAAAAAGACTTGTTGTTCTTCTGTTCAGACTAACCCGGCTTTCGTAGCTGTTAGAAACCTGGCTACTTATGGAGAAGCTAGTCAAGAATGCTTGGAGTTGTTTGAGTTATTGGAGTGTTCAATCTGTAACCCAAATGTTGGAATTCAACCGGGTCCTCCTCGTATATGCGCCTCGTTCTGTGACAGAGTCTTTGAAGCCTGCAAAGATGCATACTTTGCCAGTAATGCACTTAAACGGGTGATTGGCCCTTGTGGAGTAAACGACGACATAATCTGCATTAAGGCCTCAAATTGGGAATCCAATGGCACATCATTCTGTGAAGCAGCTGGTTTTGCTGTTCAAAGGAATGATGATTCTAGAGAAAAACCGTGCTACGGAAGCAAAGCAAGTCTAGAATCAGTAGTGGAATCATGGTCAAGAGACTCTCGAAAGGAGACGCCTTTAAAAACTGAGACTTTGTCATGTTTTAAAGATCTTCTCCAATGGGTTCGCGAAATGACAACGATTCAGAAAATTTCTTTGGGAATGTCGTTTCTTATAGCAGGAATGTTCTTGATCAGGCAATCTAATAACCGTAATCAGAAGCAGCGACTAGCTGCGATTCAGAGGACCGCTAGAAGATTGAGAGGGAACGGGAACGGGGATTCATACAGTGCAGCTATAAATAGAAGAACAAGCTCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Folate_rec

Protein Analysis

300

Amino Acids

33.1

Weight (kDa)

9.25

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Folate_rec PF03024 62 - 198 1.1e-22 Folate receptor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 353
AccII CGCG 1 cut(s) 708
AciI CCGC 2 cut(s) 137, 828
AclWI GGATC 3 cut(s) 177, 190, 198
AcsI RAATTY 2 cut(s) 357, 729
AcyI GRCGYC 1 cut(s) 653
AfiI CCNNNNNNNGG 3 cut(s) 353, 507, 590
AgsI TTSAA 5 cut(s) 103, 336, 362, 410, 557
AjnI CCWGG 1 cut(s) 273
AjuI GAANNNNNNNTTGG 2 cut(s) 719, 751
AluBI AGCT 6 cut(s) 263, 293, 542, 812, 875, 894
AluI AGCT 6 cut(s) 263, 293, 542, 812, 875, 894
Alw26I GTCTC 3 cut(s) 630, 644, 662
AlwI GGATC 3 cut(s) 177, 190, 198
AoxI GGCC 2 cut(s) 460, 498
ApeKI GCWGC 4 cut(s) 539, 802, 812, 872
ApoI RAATTY 2 cut(s) 357, 729
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 3 cut(s) 368, 461, 825
AsuC2I CCSGG 3 cut(s) 206, 251, 366
AsuHPI GGTGA 1 cut(s) 466
AvaII GGWCC 2 cut(s) 368, 825
BamHI GGATCC 1 cut(s) 182
BbvI GCAGC 4 cut(s) 551, 799, 814, 884
BciT130I CCWGG 1 cut(s) 275
BclI TGATCA 1 cut(s) 771
BcnI CCSGG 3 cut(s) 206, 251, 366
BcoDI GTCTC 3 cut(s) 630, 644, 662
BfaI CTAG 5 cut(s) 294, 573, 608, 809, 831
BglII AGATCT 1 cut(s) 688
BisI GCNGC 4 cut(s) 540, 803, 813, 873
BlsI GCNGC 4 cut(s) 541, 804, 814, 874
Bme1390I CCNGG 4 cut(s) 206, 251, 275, 366
Bme18I GGWCC 2 cut(s) 368, 825
BmgT120I GGNCC 3 cut(s) 368, 461, 825
BmiI GGNNCC 2 cut(s) 184, 369
BmrFI CCNGG 4 cut(s) 206, 251, 275, 366
BmsI GCATC 1 cut(s) 412
BpuMI CCSGG 3 cut(s) 206, 251, 366
BsaHI GRCGYC 1 cut(s) 653
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 2 cut(s) 80, 94
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 507, 590
Bse1I ACTGG 1 cut(s) 435
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 186
BseLI CCNNNNNNNGG 3 cut(s) 353, 507, 590
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 1 cut(s) 435
BseRI GAGGAG 1 cut(s) 363
BseXI GCAGC 4 cut(s) 551, 799, 814, 884
BsgI GTGCAG 2 cut(s) 105, 891
Bsh1236I CGCG 1 cut(s) 708
BshFI GGCC 2 cut(s) 462, 500
BsiSI CCGG 5 cut(s) 81, 95, 205, 251, 365
BslI CCNNNNNNNGG 3 cut(s) 353, 507, 590
BsmAI GTCTC 3 cut(s) 630, 644, 662
BsmBI CGTCTC 1 cut(s) 644
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 2 cut(s) 462, 500
Bsp143I GATC 6 cut(s) 45, 66, 182, 190, 688, 771
Bsp68I TCGCGA 1 cut(s) 708
BspACI CCGC 2 cut(s) 137, 828
BspANI GGCC 2 cut(s) 462, 500
BspCNI CTCAG 1 cut(s) 658
BspFNI CGCG 1 cut(s) 708
BspLI GGNNCC 2 cut(s) 184, 369
BspPI GGATC 3 cut(s) 177, 190, 198
BsrI ACTGG 1 cut(s) 435
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 6 cut(s) 45, 66, 182, 190, 688, 771
BssNI GRCGYC 1 cut(s) 653
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 3 cut(s) 585, 791, 869
BstACI GRCGYC 1 cut(s) 653
BstAPI GCANNNNNTGC 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 415
BstDEI CTNAG 2 cut(s) 165, 666
BstFNI CGCG 1 cut(s) 708
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 6 cut(s) 48, 69, 185, 193, 691, 774
BstMAI GTCTC 3 cut(s) 630, 644, 662
BstMBI GATC 6 cut(s) 45, 66, 182, 190, 688, 771
BstMWI GCNNNNNNNGC 5 cut(s) 260, 431, 440, 548, 594
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 4 cut(s) 204, 249, 273, 364
BstUI CGCG 1 cut(s) 708
BstV1I GCAGC 4 cut(s) 551, 799, 814, 884
BstX2I RGATCY 3 cut(s) 182, 190, 688
BstYI RGATCY 3 cut(s) 182, 190, 688
BsuRI GGCC 2 cut(s) 462, 500
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 93, 874
BtuMI TCGCGA 1 cut(s) 708
Cac8I GCNNGC 1 cut(s) 415
CfoI GCGC 1 cut(s) 386
Cfr13I GGNCC 3 cut(s) 368, 461, 825
CseI GACGC 1 cut(s) 661
CviAII CATG 2 cut(s) 627, 678
DdeI CTNAG 2 cut(s) 165, 666
DpnI GATC 6 cut(s) 47, 68, 184, 192, 690, 773
DpnII GATC 6 cut(s) 45, 66, 182, 190, 688, 771
DraI TTTAAA 2 cut(s) 660, 685
EciI GGCGGA 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 500
Eco47I GGWCC 2 cut(s) 368, 825
EcoO109I RGGNCCY 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 186
Esp3I CGTCTC 1 cut(s) 644
FaeI CATG 2 cut(s) 630, 681
FatI CATG 2 cut(s) 626, 677
FauNDI CATATG 1 cut(s) 142
FbaI TGATCA 1 cut(s) 771
Fnu4HI GCNGC 4 cut(s) 540, 803, 813, 873
Fsp4HI GCNGC 4 cut(s) 540, 803, 813, 873
FspBI CTAG 5 cut(s) 294, 573, 608, 809, 831
GlaI GCGC 1 cut(s) 385
GluI GCNGC 4 cut(s) 540, 803, 813, 873
HaeIII GGCC 2 cut(s) 462, 500
HapII CCGG 5 cut(s) 81, 95, 205, 251, 365
HgaI GACGC 1 cut(s) 661
HhaI GCGC 1 cut(s) 386
Hin1I GRCGYC 1 cut(s) 653
Hin1II CATG 2 cut(s) 630, 681
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HpaII CCGG 5 cut(s) 81, 95, 205, 251, 365
HphI GGTGA 1 cut(s) 466
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 7 cut(s) 39, 45, 243, 726, 798, 822, 898
Hpy188III TCNNGA 8 cut(s) 64, 299, 573, 608, 633, 642, 707, 769
Hpy8I GTNNAC 1 cut(s) 475
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 2 cut(s) 16, 146
HpyCH4III ACNGT 3 cut(s) 585, 791, 869
HpyCH4V TGCA 6 cut(s) 86, 417, 425, 443, 492, 872
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 431, 440, 548, 594
HpyF3I CTNAG 2 cut(s) 165, 666
Hsp92I GRCGYC 1 cut(s) 653
Hsp92II CATG 2 cut(s) 630, 681
HspAI GCGC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 771
Kzo9I GATC 6 cut(s) 45, 66, 182, 190, 688, 771
Lsp1109I GCAGC 4 cut(s) 551, 799, 814, 884
LweI GCATC 1 cut(s) 412
MaeI CTAG 5 cut(s) 294, 573, 608, 809, 831
MaeIII GTNAC 2 cut(s) 341, 395
MalI GATC 6 cut(s) 47, 68, 184, 192, 690, 773
MboI GATC 6 cut(s) 45, 66, 182, 190, 688, 771
MboII GAAGA 7 cut(s) 18, 31, 47, 225, 683, 846, 897
MflI RGATCY 3 cut(s) 182, 190, 688
MluCI AATT 3 cut(s) 357, 505, 729
MlyI GAGTC 3 cut(s) 49, 411, 632
MmeI TCCRAC 2 cut(s) 129, 334
MnlI CCTC 9 cut(s) 119, 123, 171, 381, 384, 397, 511, 816, 836
Mph1103I ATGCAT 1 cut(s) 427
MseI TTAA 6 cut(s) 14, 447, 495, 659, 684, 901
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 5 cut(s) 81, 95, 205, 251, 365
MspR9I CCNGG 4 cut(s) 206, 251, 275, 366
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 708
MwoI GCNNNNNNNGC 5 cut(s) 260, 431, 440, 548, 594
NciI CCSGG 3 cut(s) 206, 251, 366
NdeI CATATG 1 cut(s) 142
NdeII GATC 6 cut(s) 45, 66, 182, 190, 688, 771
NlaIII CATG 2 cut(s) 630, 681
NlaIV GGNNCC 2 cut(s) 184, 369
NmuCI GTSAC 1 cut(s) 395
NruI TCGCGA 1 cut(s) 708
NsiI ATGCAT 1 cut(s) 427
PceI AGGCCT 1 cut(s) 500
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 8 cut(s) 34, 512, 569, 611, 623, 721, 817, 860
PflFI GACNNNGTC 2 cut(s) 401, 673
PflMI CCANNNNNTGG 1 cut(s) 353
PkrI GCNGC 4 cut(s) 541, 804, 814, 874
PleI GAGTC 3 cut(s) 48, 410, 632
PpsI GAGTC 3 cut(s) 48, 410, 632
PpuMI RGGWCCY 1 cut(s) 368
Psp5II RGGWCCY 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 184, 369
PspPI GGNCC 3 cut(s) 368, 461, 825
PspPPI RGGWCCY 1 cut(s) 368
PsuI RGATCY 3 cut(s) 182, 190, 688
PsyI GACNNNGTC 2 cut(s) 401, 673
PvuII CAGCTG 1 cut(s) 542
RruI TCGCGA 1 cut(s) 708
SaqAI TTAA 6 cut(s) 14, 447, 495, 659, 684, 901
SatI GCNGC 4 cut(s) 540, 803, 813, 873
Sau3AI GATC 6 cut(s) 45, 66, 182, 190, 688, 771
Sau96I GGNCC 3 cut(s) 368, 461, 825
SchI GAGTC 3 cut(s) 49, 411, 632
ScrFI CCNGG 4 cut(s) 206, 251, 275, 366
SetI ASST 9 cut(s) 27, 134, 265, 276, 295, 544, 814, 877, 896
SfaNI GCATC 1 cut(s) 412
SinI GGWCC 2 cut(s) 368, 825
Sse9I AATT 3 cut(s) 357, 505, 729
SseBI AGGCCT 1 cut(s) 500
SsiI CCGC 2 cut(s) 137, 828
SspMI CTAG 5 cut(s) 294, 573, 608, 809, 831
StuI AGGCCT 1 cut(s) 500
StyD4I CCNGG 4 cut(s) 204, 249, 273, 364
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 3 cut(s) 585, 791, 869
TaqI TCGA 1 cut(s) 643
TasI AATT 3 cut(s) 357, 505, 729
TfiI GAWTC 8 cut(s) 34, 512, 569, 611, 623, 721, 817, 860
Tru1I TTAA 6 cut(s) 14, 447, 495, 659, 684, 901
Tru9I TTAA 6 cut(s) 14, 447, 495, 659, 684, 901
TscAI CASTG 2 cut(s) 93, 874
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 4 cut(s) 539, 802, 812, 872
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 2 cut(s) 47, 852
TspGWI ACGGA 1 cut(s) 606
TspRI CASTG 2 cut(s) 93, 874
Tth111I GACNNNGTC 2 cut(s) 401, 673
Van91I CCANNNNNTGG 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 368, 825
XapI RAATTY 2 cut(s) 357, 729
XbaI TCTAGA 2 cut(s) 572, 607
XspI CTAG 5 cut(s) 294, 573, 608, 809, 831
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.