Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001032

Physical Location & Seq

Genomic Coordinates Reverse (-)

55881645 .. 55883169

Gene Structure 1525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG409300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCAGACACATGTTAAGAGATCAAAACTTCCTTCAGATGCAGCTGACTCTGTGATGGAAGCTGTCCCATTATTGACAAATCTTCTGCAATATCATGATGCTAAGGTTTTGGAGCATGCTTCTGTATGTCTGACCCAAATTGCTGAATCATTTGCATCATCGCCTGACAAACTTGACGAACTGTGTTGTACTGGTCCGCAGAACGATAACCCATGGTTTAAGTGCATCGAGGTACAACAGTGGGTTGCAATGTATGAGAGTGATAATGGTGAGTTTTCTGTGACTTTTGAGATAACAAGCATGATGCAGGACAGCACAAGGTGGGTTACTGCCTATAATTGTGCTGAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

117

Amino Acids

13.17

Weight (kDa)

4.43

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0001032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830
fragaria_vesca	FvH4_6g06800 FvH4_6g06800 FvH4_6g06800
malus_domestica	MD04G1198500.v1.1
prunus_persica	Prupe.6G319500_v2.0.a1
pyrus_communis	pycom04g17560 pycom12g19820
rosa_chinensis	RchiOBHm_Chr2g0123281 RchiOBHm_Chr3g0456161 RchiOBHm_Chr3g0458101 RchiOBHm_Chr4g0442861 RchiOBHm_Chr4g0442871 RchiOBHm_Chr4g0442951
rosa_laevigata	RLG00000005970 RLG00000010014
rosa_multiflora	Rmu_sc0000121.1_g000021 Rmu_sc0000124.1_g000039 Rmu_sc0000279.1_g000039 Rmu_sc0000384.1_g000020 Rmu_sc0001917.1_g000005 Rmu_sc0002607.1_g000043 Rmu_sc0007295.1_g000002 Rmu_sc0042689.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423260 Rroxscaffold_6G00423720
rosa_rugosa	Rorug03G0012000 Rorug03G0012100 Rorug04G0109700 Rorug04G0343700
rosa_samantha	Rh1CG037400 Rh2BG184700 Rh2BG311600 Rh3AG072300 Rh3AG085600 Rh3BG074200 Rh3BG088300 Rh3CG073700 Rh3DG075500 Rh3DG089200 Rh4AG396600 Rh4AG396900 Rh4AG397000 Rh4AG397400 Rh4AG397800 Rh4BG409300 Rh4CG424800 Rh4DG403200 Rh4DG403500 Rh4DG403600 Rh4DG404100 Rh5BG556500 Rh6BG383200
rosa_wichuraiana	Rw2G024280 Rw3G005860 Rw3G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	18
AdeI	CACNNNGTG	1 cut(s)	321
AfaI	GTAC	2 cut(s)	190, 234
AflIII	ACRYGT	1 cut(s)	10
AluBI	AGCT	2 cut(s)	44, 62
AluI	AGCT	2 cut(s)	44, 62
ApeKI	GCWGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	194
BaeI	ACNNNNGTAYC	2 cut(s)	224, 257
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	49
BisI	GCNGC	1 cut(s)	42
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmsI	GCATC	5 cut(s)	28, 88, 164, 234, 294
Bpu10I	CCTNAGC	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	20
Bsp1720I	GCTNAGC	1 cut(s)	345
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	1 cut(s)	197
BspCNI	CTCAG	1 cut(s)	337
BspHI	TCATGA	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	183, 240
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	3 cut(s)	102, 345, 351
BstDSI	CCRYGG	1 cut(s)	212
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstNSI	RCATGY	2 cut(s)	14, 119
BstV1I	GCAGC	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	212
BtgZI	GCGATG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	117
CciI	TCATGA	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	189, 233
CviAII	CATG	5 cut(s)	11, 95, 116, 213, 301
CviJI	RGCY	3 cut(s)	44, 62, 349
CviKI_1	RGCY	3 cut(s)	44, 62, 349
CviQI	GTAC	2 cut(s)	189, 233
DdeI	CTNAG	3 cut(s)	102, 345, 351
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
DraIII	CACNNNGTG	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	5 cut(s)	14, 98, 119, 216, 304
FaiI	YATR	8 cut(s)	12, 96, 117, 127, 214, 255, 302, 336
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	5 cut(s)	10, 94, 115, 212, 300
Fnu4HI	GCNGC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	42
Hin1II	CATG	5 cut(s)	14, 98, 119, 216, 304
HinfI	GANTC	2 cut(s)	47, 146
HphI	GGTGA	1 cut(s)	281
Hpy188I	TCNGA	2 cut(s)	37, 132
Hpy188III	TCNNGA	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	2 cut(s)	183, 240
HpyCH4V	TGCA	7 cut(s)	4, 41, 88, 155, 225, 248, 307
HpyF3I	CTNAG	3 cut(s)	102, 345, 351
Hsp92II	CATG	5 cut(s)	14, 98, 119, 216, 304
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	3 cut(s)	177, 177, 293
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	5 cut(s)	28, 88, 164, 234, 294
MaeIII	GTNAC	2 cut(s)	280, 325
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	1 cut(s)	74
MluCI	AATT	2 cut(s)	138, 337
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	1 cut(s)	223
MseI	TTAA	2 cut(s)	15, 219
MspA1I	CMGCKG	1 cut(s)	44
NcoI	CCATGG	1 cut(s)	212
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	5 cut(s)	14, 98, 119, 216, 304
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	2 cut(s)	14, 119
PaeI	GCATGC	1 cut(s)	119
PagI	TCATGA	1 cut(s)	94
PciI	ACATGT	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PscI	ACATGT	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	2 cut(s)	190, 234
RsaNI	GTAC	2 cut(s)	189, 233
SaqAI	TTAA	2 cut(s)	15, 219
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	41
SetI	ASST	5 cut(s)	46, 64, 108, 234, 323
SfaNI	GCATC	5 cut(s)	28, 88, 164, 234, 294
SinI	GGWCC	1 cut(s)	194
SphI	GCATGC	1 cut(s)	119
Sse9I	AATT	2 cut(s)	138, 337
SsiI	CCGC	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	2 cut(s)	183, 240
TaqI	TCGA	1 cut(s)	228
TasI	AATT	2 cut(s)	138, 337
TatI	WGTACW	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	15, 219
Tru9I	TTAA	2 cut(s)	15, 219
TscAI	CASTG	1 cut(s)	245
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	280
TspRI	CASTG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	194
XceI	RCATGY	2 cut(s)	14, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.