Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001032

Physical Location & Seq

Genomic Coordinates Reverse (-)

6889945 .. 6891576

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG085600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGCAGTCACATGTTAAGAGATCAAAACTTCCTTCAGATGGAGCTGACTTTGTGATGGAAGATGTCCCATTATTGACTAATCTTCTGCAATATCATGATGCTAAGGAAGCTAAAGCATTATTAAGAAGATACAGATATCGTACAGGAACCATAGATGTTGCTTTACATGTATTTGAAGGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

61

Amino Acids

7.03

Weight (kDa)

6.83

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830
fragaria_vesca	FvH4_6g06800 FvH4_6g06800 FvH4_6g06800
malus_domestica	MD04G1198500.v1.1
prunus_persica	Prupe.6G319500_v2.0.a1
pyrus_communis	pycom04g17560 pycom12g19820
rosa_chinensis	RchiOBHm_Chr2g0123281 RchiOBHm_Chr3g0456161 RchiOBHm_Chr3g0458101 RchiOBHm_Chr4g0442861 RchiOBHm_Chr4g0442871 RchiOBHm_Chr4g0442951
rosa_laevigata	RLG00000005970 RLG00000010014
rosa_multiflora	Rmu_sc0000121.1_g000021 Rmu_sc0000124.1_g000039 Rmu_sc0000279.1_g000039 Rmu_sc0000384.1_g000020 Rmu_sc0001917.1_g000005 Rmu_sc0002607.1_g000043 Rmu_sc0007295.1_g000002 Rmu_sc0042689.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423260 Rroxscaffold_6G00423720
rosa_rugosa	Rorug03G0012000 Rorug03G0012100 Rorug04G0109700 Rorug04G0343700
rosa_samantha	Rh1CG037400 Rh2BG184700 Rh2BG311600 Rh3AG072300 Rh3AG085600 Rh3BG074200 Rh3BG088300 Rh3CG073700 Rh3DG075500 Rh3DG089200 Rh4AG396600 Rh4AG396900 Rh4AG397000 Rh4AG397400 Rh4AG397800 Rh4BG409300 Rh4CG424800 Rh4DG403200 Rh4DG403500 Rh4DG403600 Rh4DG404100 Rh5BG556500 Rh6BG383200
rosa_wichuraiana	Rw2G024280 Rw3G005860 Rw3G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	18
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	38
AflIII	ACRYGT	2 cut(s)	10, 166
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	2 cut(s)	44, 110
AluI	AGCT	2 cut(s)	44, 110
BccI	CCATC	2 cut(s)	32, 49
BmiI	GGNNCC	1 cut(s)	148
BmsI	GCATC	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	20
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	148
BssMI	GATC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNSI	RCATGY	2 cut(s)	14, 170
CciI	TCATGA	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	3 cut(s)	11, 95, 167
CviJI	RGCY	2 cut(s)	44, 110
CviKI_1	RGCY	2 cut(s)	44, 110
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	18
EcoRV	GATATC	1 cut(s)	137
FaeI	CATG	3 cut(s)	14, 98, 170
FaiI	YATR	4 cut(s)	12, 96, 152, 168
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	3 cut(s)	10, 94, 166
Hin1II	CATG	3 cut(s)	14, 98, 170
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	42, 170
HpyCH4V	TGCA	2 cut(s)	4, 88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	14, 98, 170
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	1 cut(s)	129
LweI	GCATC	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	3 cut(s)	71, 74, 138
MseI	TTAA	2 cut(s)	15, 122
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	3 cut(s)	14, 98, 170
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	2 cut(s)	14, 170
PagI	TCATGA	1 cut(s)	94
PciI	ACATGT	2 cut(s)	10, 166
PscI	ACATGT	2 cut(s)	10, 166
PspN4I	GGNNCC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	15, 122
Sau3AI	GATC	1 cut(s)	20
SetI	ASST	2 cut(s)	46, 112
SfaNI	GCATC	1 cut(s)	88
SgeI	CNNG	4 cut(s)	23, 107, 156, 179
Tru1I	TTAA	2 cut(s)	15, 122
Tru9I	TTAA	2 cut(s)	15, 122
TseFI	GTSAC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	6
XceI	RCATGY	2 cut(s)	14, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.