Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001032

Physical Location & Seq

Genomic Coordinates Reverse (-)

6881630 .. 6885442

Gene Structure 3813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG089200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCTTTGCCTTTGTGGGTGGTGGATTAGCTTTTGGTTGGCTTGGAGGAGCAGTGCATCTCCCTTGCATGTCCACTACCCTTCGAATTGGAGGAGTTCTGCAAGACCTTCAAACTGGAGTCTCCTGATGCAGACACATGTTAAGAGATCAAAACTTCCTTTAGATGGAGCTGACTTTGTGATGGAAGATGTCCCATTATTGACAAATCTTCTCCAATATCATGATGCTAAGGTTGAGGAGCGCCCTGTGTCGATTGAGGAATTGCTAGAAGCTGATGAAGTGTTCTGTACTGGATCTGCTGTCTGTTTAATTATCACCTATAGGCAGCATAACTTACCTGGGAAAATGGTGATCTTCTCATATTGGTTCCCTGATCTAACGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

128

Amino Acids

14.85

Weight (kDa)

5.89

Isoelectric Point (pI)

60.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830
fragaria_vesca	FvH4_6g06800 FvH4_6g06800 FvH4_6g06800
malus_domestica	MD04G1198500.v1.1
prunus_persica	Prupe.6G319500_v2.0.a1
pyrus_communis	pycom04g17560 pycom12g19820
rosa_chinensis	RchiOBHm_Chr2g0123281 RchiOBHm_Chr3g0456161 RchiOBHm_Chr3g0458101 RchiOBHm_Chr4g0442861 RchiOBHm_Chr4g0442871 RchiOBHm_Chr4g0442951
rosa_laevigata	RLG00000005970 RLG00000010014
rosa_multiflora	Rmu_sc0000121.1_g000021 Rmu_sc0000124.1_g000039 Rmu_sc0000279.1_g000039 Rmu_sc0000384.1_g000020 Rmu_sc0001917.1_g000005 Rmu_sc0002607.1_g000043 Rmu_sc0007295.1_g000002 Rmu_sc0042689.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423260 Rroxscaffold_6G00423720
rosa_rugosa	Rorug03G0012000 Rorug03G0012100 Rorug04G0109700 Rorug04G0343700
rosa_samantha	Rh1CG037400 Rh2BG184700 Rh2BG311600 Rh3AG072300 Rh3AG085600 Rh3BG074200 Rh3BG088300 Rh3CG073700 Rh3DG075500 Rh3DG089200 Rh4AG396600 Rh4AG396900 Rh4AG397000 Rh4AG397400 Rh4AG397800 Rh4BG409300 Rh4CG424800 Rh4DG403200 Rh4DG403500 Rh4DG403600 Rh4DG404100 Rh5BG556500 Rh6BG383200
rosa_wichuraiana	Rw2G024280 Rw3G005860 Rw3G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	301
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	3 cut(s)	30, 170, 272
AluI	AGCT	3 cut(s)	30, 170, 272
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	307, 361
AsuII	TTCGAA	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	2 cut(s)	158, 175
BciT130I	CCWGG	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	244
BisI	GCNGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	327
Bme1390I	CCNGG	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	368
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	3 cut(s)	65, 117, 214
BpmI	CTGGAG	1 cut(s)	136
Bpu10I	CCTNAGC	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	338
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	119, 295
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseNI	ACTGG	2 cut(s)	119, 295
BseRI	GAGGAG	3 cut(s)	61, 106, 251
BseXI	GCAGC	1 cut(s)	337
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	83
Bsp143I	GATC	4 cut(s)	146, 293, 351, 373
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	368
BspPI	GGATC	1 cut(s)	301
BspT104I	TTCGAA	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	119, 295
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	4 cut(s)	146, 293, 351, 373
Bst2UI	CCWGG	1 cut(s)	339
BstBI	TTCGAA	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	4 cut(s)	149, 296, 354, 376
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	4 cut(s)	146, 293, 351, 373
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	2 cut(s)	71, 140
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	3 cut(s)	68, 137, 221
CviJI	RGCY	4 cut(s)	30, 41, 170, 272
CviKI_1	RGCY	4 cut(s)	30, 41, 170, 272
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	4 cut(s)	148, 295, 353, 375
DpnII	GATC	4 cut(s)	146, 293, 351, 373
EcoRII	CCWGG	1 cut(s)	337
FaeI	CATG	3 cut(s)	71, 140, 224
FaiI	YATR	6 cut(s)	69, 138, 222, 321, 330, 361
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	67, 136, 220
Fnu4HI	GCNGC	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	326
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	136
HaeII	RGCGCY	1 cut(s)	244
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	71, 140, 224
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	1 cut(s)	118
HphI	GGTGA	2 cut(s)	307, 361
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188III	TCNNGA	2 cut(s)	124, 221
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	90, 117
HpyCH4V	TGCA	4 cut(s)	56, 67, 101, 130
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	71, 140, 224
HspAI	GCGC	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	146, 293, 351, 373
LmnI	GCTCC	3 cut(s)	48, 167, 238
LpnPI	CCDG	6 cut(s)	100, 137, 258, 276, 324, 351
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	3 cut(s)	65, 117, 214
MaeI	CTAG	1 cut(s)	266
MalI	GATC	4 cut(s)	148, 295, 353, 375
MboI	GATC	4 cut(s)	146, 293, 351, 373
MboII	GAAGA	3 cut(s)	197, 200, 346
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	4 cut(s)	85, 260, 309, 382
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	4 cut(s)	39, 84, 229, 250
MseI	TTAA	2 cut(s)	141, 308
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
NdeII	GATC	4 cut(s)	146, 293, 351, 373
NlaIII	CATG	3 cut(s)	71, 140, 224
NlaIV	GGNNCC	1 cut(s)	368
NspI	RCATGY	2 cut(s)	71, 140
NspV	TTCGAA	1 cut(s)	83
PagI	TCATGA	1 cut(s)	220
PciI	ACATGT	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	327
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
PscI	ACATGT	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	141, 308
SatI	GCNGC	1 cut(s)	326
Sau3AI	GATC	4 cut(s)	146, 293, 351, 373
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	339
SetI	ASST	7 cut(s)	32, 109, 172, 234, 274, 320, 340
SfaNI	GCATC	3 cut(s)	65, 117, 214
SfcI	CTRYAG	1 cut(s)	319
SfuI	TTCGAA	1 cut(s)	83
Sse9I	AATT	4 cut(s)	85, 260, 309, 382
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	337
TaqI	TCGA	2 cut(s)	83, 251
TasI	AATT	4 cut(s)	85, 260, 309, 382
TatI	WGTACW	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	141, 308
Tru9I	TTAA	2 cut(s)	141, 308
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	291
TspRI	CASTG	1 cut(s)	58
XceI	RCATGY	2 cut(s)	71, 140
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.