Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001032

Physical Location & Seq

Genomic Coordinates Reverse (-)

5742436 .. 5746117

Gene Structure 3682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42302

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGTTATGGTTATCTGATTTTGCTGCTTCTTATCAATACACCGGTTCCTTTTTCTTCTGGTAAACCAGACAGAGTGTGCATTTCCCAAGGTAGTCGTTTTCCTCCATTCTCTTCTGAGGGAAAGCCTCCAAAACGGGTCAGCAAGGGACCCAAAGATCTGACTCTTTGCAGGGTGTTCCGTAAAAAAACTTGTTGTGATGTAGCCCAGACACATCCTGCACTGCTAGCCATTAGGAAGTTGGCTTTGGCCGGGGAAGCAAACTCAGAGTGCTTGCAATTATGGGAATTATTGGAATGTTCTATCTGTGATCCCCGCATTGGTGTGCAGCCAGGACCTCCAGTTATATGTGCCTCTTTCTGTGACAGGGTCTTCAGTGCTTGTTCCGGGGCTTACTACTCAACAGATGCAATAACACAGGTTCTAGCACCCTGTGGAGTAAATGATTACGTTTGTGGTAGGGCCTCGGAGTGGATTCTTAATGGCACAGAGTTCTGCCATGCTGCAGGGTTTGCTGTTAAGGGTGATACGTCTGAGAGCCTGGAAGAAACATTTTGCTATGGTGGTAAAGCTAGTCTTGATTTGATTGCGGATTCATGGAAGGTTTCACAATCTGATGTGCCCCGGAAAGTTCAGAGCTTGAGGCTGCTAGAGGATTTCCACCAGAGAGTGAGGGAAATGCCATATAGCGAACGAGTTTCTTGGGCTGTGGGAGGATTGGTTCTTACAGCAGGCCTGTTGTTTGTAAGCAGAAGGAAAGGTTATAACCAGCGCCACAGACAAGCCGCTTTACAGCGTACCACTAAGAAACTAGAAGCCAAAATGTACCCGAAATCTACTGATAGTCATGGAAATAGGAAAGTAAGTAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Folate_rec

Protein Analysis

291

Amino Acids

32.12

Weight (kDa)

9.17

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Folate_rec	PF03024	48 - 169	6.8e-15	Folate receptor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830
fragaria_vesca	FvH4_6g06800 FvH4_6g06800 FvH4_6g06800
malus_domestica	MD04G1198500.v1.1
prunus_persica	Prupe.6G319500_v2.0.a1
pyrus_communis	pycom04g17560 pycom12g19820
rosa_chinensis	RchiOBHm_Chr2g0123281 RchiOBHm_Chr3g0456161 RchiOBHm_Chr3g0458101 RchiOBHm_Chr4g0442861 RchiOBHm_Chr4g0442871 RchiOBHm_Chr4g0442951
rosa_laevigata	RLG00000005970 RLG00000010014
rosa_multiflora	Rmu_sc0000121.1_g000021 Rmu_sc0000124.1_g000039 Rmu_sc0000279.1_g000039 Rmu_sc0000384.1_g000020 Rmu_sc0001917.1_g000005 Rmu_sc0002607.1_g000043 Rmu_sc0007295.1_g000002 Rmu_sc0042689.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423260 Rroxscaffold_6G00423720
rosa_rugosa	Rorug03G0012000 Rorug03G0012100 Rorug04G0109700 Rorug04G0343700
rosa_samantha	Rh1CG037400 Rh2BG184700 Rh2BG311600 Rh3AG072300 Rh3AG085600 Rh3BG074200 Rh3BG088300 Rh3CG073700 Rh3DG075500 Rh3DG089200 Rh4AG396600 Rh4AG396900 Rh4AG397000 Rh4AG397400 Rh4AG397800 Rh4BG409300 Rh4CG424800 Rh4DG403200 Rh4DG403500 Rh4DG403600 Rh4DG404100 Rh5BG556500 Rh6BG383200
rosa_wichuraiana	Rw2G024280 Rw3G005860 Rw3G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	765
AciI	CCGC	3 cut(s)	316, 590, 786
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	249
AcuI	CTGAAG	1 cut(s)	358
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	2 cut(s)	799, 827
AfiI	CCNNNNNNNGG	2 cut(s)	320, 471
AgeI	ACCGGT	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	331, 540
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AloI	GAACNNNNNNTCC	2 cut(s)	705, 737
AluBI	AGCT	2 cut(s)	572, 639
AluI	AGCT	2 cut(s)	572, 639
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	3 cut(s)	249, 462, 733
ApeKI	GCWGC	4 cut(s)	25, 328, 503, 646
AsiGI	ACCGGT	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	774
AspS9I	GGNCC	3 cut(s)	149, 335, 462
AsuC2I	CCSGG	3 cut(s)	253, 388, 625
AsuHPI	GGTGA	1 cut(s)	536
AsuNHI	GCTAGC	1 cut(s)	226
AvaII	GGWCC	2 cut(s)	149, 335
BaeGI	GKGCMC	1 cut(s)	624
BbsI	GAAGAC	1 cut(s)	364
BbvI	GCAGC	4 cut(s)	12, 340, 490, 633
BciT130I	CCWGG	2 cut(s)	333, 542
BcnI	CCSGG	3 cut(s)	253, 388, 625
BfaI	CTAG	5 cut(s)	227, 425, 573, 650, 812
BfmI	CTRYAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	775
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	5 cut(s)	26, 329, 504, 647, 786
BlsI	GCNGC	5 cut(s)	27, 330, 505, 648, 787
Bme1390I	CCNGG	5 cut(s)	253, 333, 388, 542, 625
Bme18I	GGWCC	2 cut(s)	149, 335
BmgT120I	GGNCC	3 cut(s)	149, 335, 462
BmiI	GGNNCC	3 cut(s)	48, 150, 151
BmrFI	CCNGG	5 cut(s)	253, 333, 388, 542, 625
BmsI	GCATC	1 cut(s)	397
BmtI	GCTAGC	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	364
BpmI	CTGGAG	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	661
BpuMI	CCSGG	3 cut(s)	253, 388, 625
BsaJI	CCNNGG	5 cut(s)	88, 252, 387, 465, 623
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 471
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	341
BseBI	CCWGG	2 cut(s)	333, 542
BseDI	CCNNGG	5 cut(s)	88, 252, 387, 465, 623
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	320, 471
BseMII	CTCAG	3 cut(s)	108, 279, 525
BseNI	ACTGG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	4 cut(s)	12, 340, 490, 633
BsgI	GTGCAG	2 cut(s)	204, 347
BshFI	GGCC	3 cut(s)	251, 464, 735
BshTI	ACCGGT	1 cut(s)	43
BsiSI	CCGG	4 cut(s)	44, 252, 387, 625
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	320, 471
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	3 cut(s)	251, 464, 735
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	2 cut(s)	157, 310
BspACI	CCGC	3 cut(s)	316, 590, 786
BspANI	GGCC	3 cut(s)	251, 464, 735
BspCNI	CTCAG	3 cut(s)	109, 278, 526
BspLI	GGNNCC	3 cut(s)	48, 150, 151
BspMAI	CTGCAG	1 cut(s)	508
BspOI	GCTAGC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	341
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	5 cut(s)	88, 252, 387, 465, 623
BssMI	GATC	2 cut(s)	157, 310
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	2 cut(s)	333, 542
Bst6I	CTCTTC	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	3 cut(s)	228, 275, 733
BstDEI	CTNAG	4 cut(s)	117, 265, 534, 804
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	775
BstHHI	GCGC	1 cut(s)	774
BstKTI	GATC	2 cut(s)	160, 313
BstMBI	GATC	2 cut(s)	157, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 257, 512
BstNI	CCWGG	2 cut(s)	333, 542
BstSCI	CCNGG	5 cut(s)	251, 331, 386, 540, 623
BstSFI	CTRYAG	1 cut(s)	504
BstSLI	GKGCMC	1 cut(s)	624
BstV1I	GCAGC	4 cut(s)	12, 340, 490, 633
BstV2I	GAAGAC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	251, 464, 735
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	2 cut(s)	221, 382
Cac8I	GCNNGC	3 cut(s)	228, 275, 733
CfoI	GCGC	1 cut(s)	774
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	3 cut(s)	149, 335, 462
Csp6I	GTAC	2 cut(s)	798, 826
CspAI	ACCGGT	1 cut(s)	43
CviAII	CATG	3 cut(s)	500, 597, 848
CviQI	GTAC	2 cut(s)	798, 826
DdeI	CTNAG	4 cut(s)	117, 265, 534, 804
DpnI	GATC	2 cut(s)	159, 312
DpnII	GATC	2 cut(s)	157, 310
DraIII	CACNNNGTG	1 cut(s)	434
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	735
Eco47I	GGWCC	2 cut(s)	149, 335
Eco57I	CTGAAG	1 cut(s)	358
EcoO109I	RGGNCCY	3 cut(s)	149, 335, 462
EcoRII	CCWGG	2 cut(s)	331, 540
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	3 cut(s)	503, 600, 851
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	3 cut(s)	499, 596, 847
FauI	CCCGC	1 cut(s)	323
Fnu4HI	GCNGC	5 cut(s)	26, 329, 504, 647, 786
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	5 cut(s)	26, 329, 504, 647, 786
FspBI	CTAG	5 cut(s)	227, 425, 573, 650, 812
GlaI	GCGC	1 cut(s)	773
GluI	GCNGC	5 cut(s)	26, 329, 504, 647, 786
GsuI	CTGGAG	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	775
HaeIII	GGCC	3 cut(s)	251, 464, 735
HapII	CCGG	4 cut(s)	44, 252, 387, 625
HhaI	GCGC	1 cut(s)	774
Hin1II	CATG	3 cut(s)	503, 600, 851
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HinfI	GANTC	3 cut(s)	163, 475, 593
HpaII	CCGG	4 cut(s)	44, 252, 387, 625
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	8 cut(s)	18, 118, 162, 268, 469, 535, 616, 636
Hpy188III	TCNNGA	1 cut(s)	578
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	595, 747
HpyCH4IV	ACGT	2 cut(s)	450, 530
HpyCH4V	TGCA	7 cut(s)	81, 171, 221, 277, 328, 410, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 257, 512
HpyF3I	CTNAG	4 cut(s)	117, 265, 534, 804
HpySE526I	ACGT	2 cut(s)	450, 530
Hsp92II	CATG	3 cut(s)	503, 600, 851
HspAI	GCGC	1 cut(s)	772
KflI	GGGWCCC	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	157, 310
Lsp1109I	GCAGC	4 cut(s)	12, 340, 490, 633
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	5 cut(s)	227, 425, 573, 650, 812
MaeII	ACGT	2 cut(s)	450, 530
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	2 cut(s)	159, 312
MboI	GATC	2 cut(s)	157, 310
MboII	GAAGA	4 cut(s)	48, 105, 364, 557
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	624
MluCI	AATT	2 cut(s)	278, 287
MlyI	GAGTC	1 cut(s)	157
MseI	TTAA	2 cut(s)	480, 519
MslI	CAYNNNNRTG	1 cut(s)	323
MspI	CCGG	4 cut(s)	44, 252, 387, 625
MspR9I	CCNGG	5 cut(s)	253, 333, 388, 542, 625
MvaI	CCWGG	2 cut(s)	333, 542
MwoI	GCNNNNNNNGC	3 cut(s)	227, 257, 512
NciI	CCSGG	3 cut(s)	253, 388, 625
NdeII	GATC	2 cut(s)	157, 310
NheI	GCTAGC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	503, 600, 851
NlaIV	GGNNCC	3 cut(s)	48, 150, 151
NmuCI	GTSAC	1 cut(s)	362
PceI	AGGCCT	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	475, 593
PflFI	GACNNNGTC	1 cut(s)	368
PinAI	ACCGGT	1 cut(s)	43
PkrI	GCNGC	5 cut(s)	27, 330, 505, 648, 787
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PpuMI	RGGWCCY	2 cut(s)	149, 335
PsiI	TTATAA	1 cut(s)	765
Psp5II	RGGWCCY	2 cut(s)	149, 335
Psp6I	CCWGG	2 cut(s)	331, 540
PspGI	CCWGG	2 cut(s)	331, 540
PspN4I	GGNNCC	3 cut(s)	48, 150, 151
PspPI	GGNCC	3 cut(s)	149, 335, 462
PspPPI	RGGWCCY	2 cut(s)	149, 335
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	157
PsyI	GACNNNGTC	1 cut(s)	368
RsaI	GTAC	2 cut(s)	799, 827
RsaNI	GTAC	2 cut(s)	798, 826
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	480, 519
SatI	GCNGC	5 cut(s)	26, 329, 504, 647, 786
Sau3AI	GATC	2 cut(s)	157, 310
Sau96I	GGNCC	3 cut(s)	149, 335, 462
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	5 cut(s)	253, 333, 388, 542, 625
SduI	GDGCHC	1 cut(s)	624
SetI	ASST	9 cut(s)	94, 340, 423, 453, 533, 574, 606, 641, 763
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	2 cut(s)	149, 335
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
Sse9I	AATT	2 cut(s)	278, 287
SseBI	AGGCCT	1 cut(s)	735
SsiI	CCGC	3 cut(s)	316, 590, 786
SspMI	CTAG	5 cut(s)	227, 425, 573, 650, 812
StuI	AGGCCT	1 cut(s)	735
StyD4I	CCNGG	5 cut(s)	251, 331, 386, 540, 623
StyI	CCWWGG	1 cut(s)	88
TaiI	ACGT	2 cut(s)	453, 533
TasI	AATT	2 cut(s)	278, 287
TauI	GCSGC	1 cut(s)	788
TfiI	GAWTC	2 cut(s)	475, 593
Tru1I	TTAA	2 cut(s)	480, 519
Tru9I	TTAA	2 cut(s)	480, 519
TscAI	CASTG	2 cut(s)	228, 382
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	4 cut(s)	25, 328, 503, 646
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	585
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	2 cut(s)	228, 382
Tth111I	GACNNNGTC	1 cut(s)	368
VpaK11BI	GGWCC	2 cut(s)	149, 335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XspI	CTAG	5 cut(s)	227, 425, 573, 650, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.