Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001032

Physical Location & Seq

Genomic Coordinates Forward (+)

3160997 .. 3162149

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005970

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAAGCTGTCCCATTATTGACAAATCTTCTGCAATATCATGATGCTAAGGTTTTGGAGCATGCTTCTGGATGTCTGACCCAAATTGCTGAATCATTTGCATCATCGCCTGACAAACTATCCTGCCCTTCATGCTCAAAGCCAATGATGAAAAAGCCACAGAGTCAACTACTAATCTGGCCAGATCATGAAATGCAGCAGCCACTTTACAGTGCTTACTATGTACTCTTACTGTACATTTTCGAAAGCGAGAGCGAGAGGTTGCAATCATATTCTGATTTTCTACTTAAAGGTTGTACTGGTCCGCAGAACGATAACGCATGGTTTAAGTGTATCGAGGTACAACACTGGGTTGCAATGTATGAGAGTGATAATGGTGTGTTTTCTGTGACTTTTGAGATAACAAGCATGATGCAGGACAGCACAAGGTGGTTTACTGCCTATAATTGTGCTGAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

154

Amino Acids

17.54

Weight (kDa)

4.71

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830
fragaria_vesca	FvH4_6g06800 FvH4_6g06800 FvH4_6g06800
malus_domestica	MD04G1198500.v1.1
prunus_persica	Prupe.6G319500_v2.0.a1
pyrus_communis	pycom04g17560 pycom12g19820
rosa_chinensis	RchiOBHm_Chr2g0123281 RchiOBHm_Chr3g0456161 RchiOBHm_Chr3g0458101 RchiOBHm_Chr4g0442861 RchiOBHm_Chr4g0442871 RchiOBHm_Chr4g0442951
rosa_laevigata	RLG00000005970 RLG00000010014
rosa_multiflora	Rmu_sc0000121.1_g000021 Rmu_sc0000124.1_g000039 Rmu_sc0000279.1_g000039 Rmu_sc0000384.1_g000020 Rmu_sc0001917.1_g000005 Rmu_sc0002607.1_g000043 Rmu_sc0007295.1_g000002 Rmu_sc0042689.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423260 Rroxscaffold_6G00423720
rosa_rugosa	Rorug03G0012000 Rorug03G0012100 Rorug04G0109700 Rorug04G0343700
rosa_samantha	Rh1CG037400 Rh2BG184700 Rh2BG311600 Rh3AG072300 Rh3AG085600 Rh3BG074200 Rh3BG088300 Rh3CG073700 Rh3DG075500 Rh3DG089200 Rh4AG396600 Rh4AG396900 Rh4AG397000 Rh4AG397400 Rh4AG397800 Rh4BG409300 Rh4CG424800 Rh4DG403200 Rh4DG403500 Rh4DG403600 Rh4DG404100 Rh5BG556500 Rh6BG383200
rosa_wichuraiana	Rw2G024280 Rw3G005860 Rw3G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	179
AdeI	CACNNNGTG	1 cut(s)	429
AfaI	GTAC	4 cut(s)	225, 236, 298, 342
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
AoxI	GGCC	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	196, 199
AspS9I	GGNCC	1 cut(s)	302
AsuII	TTCGAA	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	208, 211
BisI	GCNGC	2 cut(s)	197, 200
BlpI	GCTNAGC	1 cut(s)	453
BlsI	GCNGC	2 cut(s)	198, 201
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmrI	ACTGGG	1 cut(s)	358
BmsI	GCATC	3 cut(s)	34, 110, 402
BmuI	ACTGGG	1 cut(s)	358
Bpu10I	CCTNAGC	1 cut(s)	48
Bpu1102I	GCTNAGC	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	243
Bse1I	ACTGG	2 cut(s)	304, 353
Bse3DI	GCAATG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	2 cut(s)	304, 353
BseXI	GCAGC	2 cut(s)	208, 211
BshFI	GGCC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	181
Bsp119I	TTCGAA	1 cut(s)	243
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	184
Bsp1720I	GCTNAGC	1 cut(s)	453
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	1 cut(s)	181
BspCNI	CTCAG	1 cut(s)	445
BspHI	TCATGA	2 cut(s)	40, 187
BspT104I	TTCGAA	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	363
BsrGI	TGTACA	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	304, 353
BssMI	GATC	1 cut(s)	184
Bst4CI	ACNGT	2 cut(s)	212, 234
BstAUI	TGTACA	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	3 cut(s)	48, 453, 459
BstF5I	GGATG	1 cut(s)	77
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	208, 211
BsuRI	GGCC	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	217, 346
Cac8I	GCNNGC	1 cut(s)	63
CciI	TCATGA	2 cut(s)	40, 187
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	4 cut(s)	224, 235, 297, 341
CviAII	CATG	6 cut(s)	41, 62, 132, 188, 321, 409
CviJI	RGCY	6 cut(s)	8, 142, 157, 181, 202, 457
CviKI_1	RGCY	6 cut(s)	8, 142, 157, 181, 202, 457
CviQI	GTAC	4 cut(s)	224, 235, 297, 341
DdeI	CTNAG	3 cut(s)	48, 453, 459
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
DraIII	CACNNNGTG	1 cut(s)	429
EaeI	YGGCCR	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	302
FaeI	CATG	6 cut(s)	44, 65, 135, 191, 324, 412
FatI	CATG	6 cut(s)	40, 61, 131, 187, 320, 408
Fnu4HI	GCNGC	2 cut(s)	197, 200
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	2 cut(s)	197, 200
GluI	GCNGC	2 cut(s)	197, 200
HaeIII	GGCC	1 cut(s)	181
Hin1II	CATG	6 cut(s)	44, 65, 135, 191, 324, 412
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
HinfI	GANTC	2 cut(s)	92, 163
Hpy166II	GTNNAC	2 cut(s)	167, 435
Hpy188I	TCNGA	2 cut(s)	78, 277
Hpy188III	TCNNGA	3 cut(s)	41, 69, 188
Hpy8I	GTNNAC	2 cut(s)	167, 435
HpyAV	CCTTC	1 cut(s)	138
HpyCH4III	ACNGT	2 cut(s)	212, 234
HpyCH4V	TGCA	6 cut(s)	34, 101, 196, 265, 356, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	3 cut(s)	48, 453, 459
Hsp92II	CATG	6 cut(s)	44, 65, 135, 191, 324, 412
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	8 cut(s)	54, 123, 136, 163, 195, 285, 334, 401
Lsp1109I	GCAGC	2 cut(s)	208, 211
LweI	GCATC	3 cut(s)	34, 110, 402
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	181
MluCI	AATT	2 cut(s)	84, 445
MluNI	TGGCCA	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	2 cut(s)	252, 331
Mox20I	TGGCCA	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	181
MseI	TTAA	2 cut(s)	288, 327
Msp20I	TGGCCA	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	6 cut(s)	44, 65, 135, 191, 324, 412
NmuCI	GTSAC	1 cut(s)	388
NspI	RCATGY	1 cut(s)	65
NspV	TTCGAA	1 cut(s)	243
PaeI	GCATGC	1 cut(s)	65
PagI	TCATGA	2 cut(s)	40, 187
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	198, 201
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	302
RsaI	GTAC	4 cut(s)	225, 236, 298, 342
RsaNI	GTAC	4 cut(s)	224, 235, 297, 341
SaqAI	TTAA	2 cut(s)	288, 327
SatI	GCNGC	2 cut(s)	197, 200
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	172
SetI	ASST	6 cut(s)	10, 54, 263, 295, 342, 431
SfaNI	GCATC	3 cut(s)	34, 110, 402
SfuI	TTCGAA	1 cut(s)	243
SinI	GGWCC	1 cut(s)	302
SphI	GCATGC	1 cut(s)	65
Sse9I	AATT	2 cut(s)	84, 445
SsiI	CCGC	1 cut(s)	305
TaaI	ACNGT	2 cut(s)	212, 234
TaqI	TCGA	2 cut(s)	243, 336
TasI	AATT	2 cut(s)	84, 445
TatI	WGTACW	3 cut(s)	223, 234, 296
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	288, 327
Tru9I	TTAA	2 cut(s)	288, 327
TscAI	CASTG	2 cut(s)	217, 353
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	2 cut(s)	196, 199
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	3 cut(s)	120, 164, 204
TspRI	CASTG	2 cut(s)	217, 353
VpaK11BI	GGWCC	1 cut(s)	302
XceI	RCATGY	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.